Clone Information

BLAST Search Result

Clone Name	bags14g07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK073386.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	329	7e-87
2	gb\|AC150751.1\| Oryza sativa (japonica cultivar-group) chromosome...	313	4e-82
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	313	4e-82
4	gb\|AC116604.1\| Genomic sequence for Oryza sativa, Nipponbare str...	313	4e-82
5	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	313	4e-82
6	gb\|AY109543.1\| Zea mays CL854_1 mRNA sequence	176	6e-41
7	gb\|AC113335.1\| Genomic sequence for Oryza sativa (japonica culti...	82	3e-12
8	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	82	3e-12
9	dbj\|AK058352.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	82	3e-12
10	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	82	3e-12
11	ref\|NM_196102.1\| Oryza sativa (japonica cultivar-group) putative...	80	1e-11
12	gb\|AC119218.7\| Mus musculus chromosome 7, clone RP24-200I20, com...	46	0.15
13	gb\|AC108832.10\| Mus musculus chromosome 7, clone RP23-242J3, com...	46	0.15
14	emb\|AL929062.10\| Mouse DNA sequence from clone RP23-342J9 on chr...	44	0.58
15	emb\|AL162723.12\| Human DNA sequence from clone RP13-428K23 on ch...	42	2.3
16	gb\|AC011416.3\| Homo sapiens chromosome 5 clone CTB-88F18, comple...	42	2.3
17	gb\|AC005915.1\|AC005915 Homo sapiens chromosome 5, Bac clone 58g1...	42	2.3
18	emb\|AL805930.16\| Mouse DNA sequence from clone RP23-455B8 on chr...	42	2.3
19	gb\|AC147091.2\| Pan troglodytes BAC clone RP43-57O16 from 7, comp...	40	9.1
20	gb\|AC182655.2\| Populus trichocarpa clone Pop1-121O5, complete se...	40	9.1
21	emb\|CT010495.9\| Mouse DNA sequence from clone RP23-226G14 on chr...	40	9.1
22	gb\|AC145920.1\| Pan troglodytes BAC clone RP43-10C15 from 7, comp...	40	9.1
23	emb\|AL513191.4\| Human DNA sequence from clone RP11-224F24 on chr...	40	9.1
24	emb\|AL157770.12\| Human DNA sequence from clone RP11-490N5 on chr...	40	9.1
25	gb\|AC092554.3\| Papio anubis clone RP41-414G17, complete sequence	40	9.1
26	emb\|AL034422.24\|HS1141E15 Human DNA sequence from clone RP5-1141...	40	9.1
27	emb\|AL645522.12\| Mouse DNA sequence from clone RP23-64E17 on chr...	40	9.1
28	gb\|AC108217.3\| Homo sapiens BAC clone RP11-681L8 from 4, complet...	40	9.1
29	gb\|DP000003.1\| Atelerix albiventris target 1 genomic scaffold	40	9.1
30	gb\|AC157954.2\| Pan troglodytes BAC clone CH251-514O14 from chrom...	40	9.1
31	gb\|AE015928.1\| Bacteroides thetaiotaomicron VPI-5482, complete g...	40	9.1
32	emb\|AJ507388.2\|SMO507388 Soybean mosaic virus gene for polyprote...	40	9.1
33	gb\|AF272983.1\|AF272983 Homo sapiens SRC tyrosine kinase gene, ex...	40	9.1
34	gb\|AC007285.3\|AC007285 Homo sapiens BAC clone RP11-576P10 from 7...	40	9.1
35	gb\|AC150469.3\| Atelerix albiventris clone LB4-498C22, complete s...	40	9.1
36	gb\|AC114632.9\| Mus musculus chromosome 5, clone RP24-114E20, com...	40	9.1
37	gb\|AC154423.2\| Mus musculus BAC clone RP24-221B7 from 17, comple...	40	9.1
38	emb\|Z79756.1\|CEF53C11 Caenorhabditis elegans Cosmid F53C11, comp...	40	9.1
39	gb\|AE017125.1\| Helicobacter hepaticus ATCC 51449, complete genome	40	9.1
40	emb\|AL359237.4\|CNS05TEO Human chromosome 14 DNA sequence BAC R-1...	40	9.1
41	emb\|AL158059.3\|CNS01RGK Human chromosome 14 DNA sequence BAC C-2...	40	9.1

>dbj|AK073386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041E22, full
            insert sequence
          Length = 2582

 Score =  329 bits (166), Expect = 7e-87
 Identities = 335/388 (86%), Gaps = 5/388 (1%)
 Strand = Plus / Plus

                                                                        
Query: 2    gttgcttgccccagggnatgacaaggtgaggatgagcacggagcagcactgtgttgcaag 61
            ||||||||||| |||| ||||||||  | |||| ||||| ||||| ||||||||||||||
Sbjct: 1790 gttgcttgcccaaggg-atgacaagaagcggattagcactgagcaacactgtgttgcaag 1848

                                                                        
Query: 62   agatattgtcaatttaattgcatgtgaaggtgcagaaagagtggagaggcacgaaccatt 121
            ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 1849 agatattgttaatttgattgcatgtgaaggtgcagaaagggtggagaggcacgagccttt 1908

                                                                        
Query: 122  tggaaagtggcggtctaggtttgcaatggctggctttagaccatacccactaagtgcatt 181
            |||||| ||| || | ||| || |||||||||||||||| || ||||||||||||||| |
Sbjct: 1909 tggaaaatggagggcaaggctttcaatggctggctttaggccgtacccactaagtgcact 1968

                                                                        
Query: 182  ggtgaacaatactatcagagcactgttaaatggttacaacagctactacaagctagagga 241
            ||||||||| ||||||| |    || |  || ||||| |||| |||||||||||||||||
Sbjct: 1969 ggtgaacaacactatcaaaaagttgctggatagttaccacagttactacaagctagagga 2028

                                                                        
Query: 242  gaaagatggtgtcatttatcttggatggaagaacagaaagctggttgtatcttctgcatg 301
            || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 gagagatggtgccctttatcttggatggaagaacagaaagctggttgtatcttctgcatg 2088

                                                                        
Query: 302  gcggtgacat-tc---ttgaatatggaagaagcttgtttaggttctttcatggctttgtg 357
            |||||||||| ||    | ||| |||||||||||| ||||||||||||| ||||||  ||
Sbjct: 2089 gcggtgacatctccgtgttaatttggaagaagcttctttaggttctttcgtggcttcttg 2148

                                        
Query: 358  ttcggcacataaatccaaggtggaacct 385
             | | | ||| |||||||||||||||||
Sbjct: 2149 gtggacgcatgaatccaaggtggaacct 2176

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>gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNOa0279P04, complete sequence
          Length = 32479

 Score =  313 bits (158), Expect = 4e-82
 Identities = 273/310 (88%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                         
Query: 2     gttgcttgccccagggnatgacaaggtgaggatgagcacggagcagcactgtgttgcaag 61
             ||||||||||| |||| ||||||||  | |||| ||||| ||||| ||||||||||||||
Sbjct: 17453 gttgcttgcccaaggg-atgacaagaagcggattagcactgagcaacactgtgttgcaag 17511

                                                                         
Query: 62    agatattgtcaatttaattgcatgtgaaggtgcagaaagagtggagaggcacgaaccatt 121
             ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 17512 agatattgttaatttgattgcatgtgaaggtgcagaaagggtggagaggcacgagccttt 17571

                                                                         
Query: 122   tggaaagtggcggtctaggtttgcaatggctggctttagaccatacccactaagtgcatt 181
             |||||| ||| || | ||| || |||||||||||||||| || ||||||||||||||| |
Sbjct: 17572 tggaaaatggagggcaaggctttcaatggctggctttaggccgtacccactaagtgcact 17631

                                                                         
Query: 182   ggtgaacaatactatcagagcactgttaaatggttacaacagctactacaagctagagga 241
             ||||||||| ||||||| |    || |  || ||||| |||| |||||||||||||||||
Sbjct: 17632 ggtgaacaacactatcaaaaagttgctggatagttaccacagttactacaagctagagga 17691

                                                                         
Query: 242   gaaagatggtgtcatttatcttggatggaagaacagaaagctggttgtatcttctgcatg 301
             || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17692 gagagatggtgccctttatcttggatggaagaacagaaagctggttgtatcttctgcatg 17751

                       
Query: 302   gcggtgacat 311
             ||||||||||
Sbjct: 17752 gcggtgacat 17761

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  313 bits (158), Expect = 4e-82
 Identities = 273/310 (88%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                           
Query: 2       gttgcttgccccagggnatgacaaggtgaggatgagcacggagcagcactgtgttgcaag 61
               ||||||||||| |||| ||||||||  | |||| ||||| ||||| ||||||||||||||
Sbjct: 4833817 gttgcttgcccaaggg-atgacaagaagcggattagcactgagcaacactgtgttgcaag 4833875

                                                                           
Query: 62      agatattgtcaatttaattgcatgtgaaggtgcagaaagagtggagaggcacgaaccatt 121
               ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 4833876 agatattgttaatttgattgcatgtgaaggtgcagaaagggtggagaggcacgagccttt 4833935

                                                                           
Query: 122     tggaaagtggcggtctaggtttgcaatggctggctttagaccatacccactaagtgcatt 181
               |||||| ||| || | ||| || |||||||||||||||| || ||||||||||||||| |
Sbjct: 4833936 tggaaaatggagggcaaggctttcaatggctggctttaggccgtacccactaagtgcact 4833995

                                                                           
Query: 182     ggtgaacaatactatcagagcactgttaaatggttacaacagctactacaagctagagga 241
               ||||||||| ||||||| |    || |  || ||||| |||| |||||||||||||||||
Sbjct: 4833996 ggtgaacaacactatcaaaaagttgctggatagttaccacagttactacaagctagagga 4834055

                                                                           
Query: 242     gaaagatggtgtcatttatcttggatggaagaacagaaagctggttgtatcttctgcatg 301
               || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4834056 gagagatggtgccctttatcttggatggaagaacagaaagctggttgtatcttctgcatg 4834115

                         
Query: 302     gcggtgacat 311
               ||||||||||
Sbjct: 4834116 gcggtgacat 4834125

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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  313 bits (158), Expect = 4e-82
 Identities = 273/310 (88%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                        
Query: 2    gttgcttgccccagggnatgacaaggtgaggatgagcacggagcagcactgtgttgcaag 61
            ||||||||||| |||| ||||||||  | |||| ||||| ||||| ||||||||||||||
Sbjct: 1638 gttgcttgcccaaggg-atgacaagaagcggattagcactgagcaacactgtgttgcaag 1580

                                                                        
Query: 62   agatattgtcaatttaattgcatgtgaaggtgcagaaagagtggagaggcacgaaccatt 121
            ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 1579 agatattgttaatttgattgcatgtgaaggtgcagaaagggtggagaggcacgagccttt 1520

                                                                        
Query: 122  tggaaagtggcggtctaggtttgcaatggctggctttagaccatacccactaagtgcatt 181
            |||||| ||| || | ||| || |||||||||||||||| || ||||||||||||||| |
Sbjct: 1519 tggaaaatggagggcaaggctttcaatggctggctttaggccgtacccactaagtgcact 1460

                                                                        
Query: 182  ggtgaacaatactatcagagcactgttaaatggttacaacagctactacaagctagagga 241
            ||||||||| ||||||| |    || |  || ||||| |||| |||||||||||||||||
Sbjct: 1459 ggtgaacaacactatcaaaaagttgctggatagttaccacagttactacaagctagagga 1400

                                                                        
Query: 242  gaaagatggtgtcatttatcttggatggaagaacagaaagctggttgtatcttctgcatg 301
            || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 gagagatggtgccctttatcttggatggaagaacagaaagctggttgtatcttctgcatg 1340

                      
Query: 302  gcggtgacat 311
            ||||||||||
Sbjct: 1339 gcggtgacat 1330

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  313 bits (158), Expect = 4e-82
 Identities = 273/310 (88%), Gaps = 1/310 (0%)
 Strand = Plus / Plus

                                                                           
Query: 2       gttgcttgccccagggnatgacaaggtgaggatgagcacggagcagcactgtgttgcaag 61
               ||||||||||| |||| ||||||||  | |||| ||||| ||||| ||||||||||||||
Sbjct: 4833932 gttgcttgcccaaggg-atgacaagaagcggattagcactgagcaacactgtgttgcaag 4833990

                                                                           
Query: 62      agatattgtcaatttaattgcatgtgaaggtgcagaaagagtggagaggcacgaaccatt 121
               ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 4833991 agatattgttaatttgattgcatgtgaaggtgcagaaagggtggagaggcacgagccttt 4834050

                                                                           
Query: 122     tggaaagtggcggtctaggtttgcaatggctggctttagaccatacccactaagtgcatt 181
               |||||| ||| || | ||| || |||||||||||||||| || ||||||||||||||| |
Sbjct: 4834051 tggaaaatggagggcaaggctttcaatggctggctttaggccgtacccactaagtgcact 4834110

                                                                           
Query: 182     ggtgaacaatactatcagagcactgttaaatggttacaacagctactacaagctagagga 241
               ||||||||| ||||||| |    || |  || ||||| |||| |||||||||||||||||
Sbjct: 4834111 ggtgaacaacactatcaaaaagttgctggatagttaccacagttactacaagctagagga 4834170

                                                                           
Query: 242     gaaagatggtgtcatttatcttggatggaagaacagaaagctggttgtatcttctgcatg 301
               || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4834171 gagagatggtgccctttatcttggatggaagaacagaaagctggttgtatcttctgcatg 4834230

                         
Query: 302     gcggtgacat 311
               ||||||||||
Sbjct: 4834231 gcggtgacat 4834240

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>gb|AY109543.1| Zea mays CL854_1 mRNA sequence
          Length = 2341

 Score =  176 bits (89), Expect = 6e-41
 Identities = 246/297 (82%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    gttgcttgccccagggnatgacaaggtgaggatgagcacggagcagcactgtgttgcaag 61
            |||||||||||||||| |||| |||  | | || ||||| ||||| ||||||||||||||
Sbjct: 1646 gttgcttgccccaggg-atgataagaagcgcattagcacagagcaacactgtgttgcaag 1704

                                                                        
Query: 62   agatattgtcaatttaattgcatgtgaaggtgcagaaagagtggagaggcacgaaccatt 121
             |||||||||||||||||||| ||||||||||| |||||  | ||||| || || || ||
Sbjct: 1705 ggatattgtcaatttaattgcttgtgaaggtgcggaaaggatagagagacatgagccttt 1764

                                                                        
Query: 122  tggaaagtggcggtctaggtttgcaatggctggctttagaccatacccactaagtgcatt 181
            |||||||||| || | ||  ||| ||||||||| ||||||||||||||  ||||| || |
Sbjct: 1765 tggaaagtggagggcaagacttgtaatggctggttttagaccatacccgttaagtccagt 1824

                                                                        
Query: 182  ggtgaacaatactatcagagcactgttaaatggttacaacagctactacaagctagagga 241
            ||||||||  || |||| | ||||| |  |  ||||| ||||| | |||| ||| |||||
Sbjct: 1825 ggtgaacagaaccatcaaaacactgcttgacagttaccacagccattacaggcttgagga 1884

                                                                     
Query: 242  gaaagatggtgtcatttatcttggatggaagaacagaaagctggttgtatcttctgc 298
            || ||||||  || |||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 1885 gagagatggcatcctttatcttggctggaagaacagaaagctggtcgtatcttctgc 1941



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 357  gttcggcacataaatccaaggtggaacctaa 387
            |||| |||||| |||||||||||||||||||
Sbjct: 2011 gttcagcacatgaatccaaggtggaacctaa 2041

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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 221/281 (78%)
 Strand = Plus / Plus

                                                                         
Query: 31    ggatgagcacggagcagcactgtgttgcaagagatattgtcaatttaattgcatgtgaag 90
             |||||||| | ||||| |||||||| ||  | || |||||||||||||| |||||||| |
Sbjct: 68715 ggatgagcgcagagcaacactgtgtggcgcgggacattgtcaatttaatcgcatgtgagg 68774

                                                                         
Query: 91    gtgcagaaagagtggagaggcacgaaccatttggaaagtggcggtctaggtttgcaatgg 150
             |||| || || || |||||||| ||    |||||||| |||  | | || ||  | ||||
Sbjct: 68775 gtgctgagagggtagagaggcatgaggtctttggaaaatggaaggcaagattaacgatgg 68834

                                                                         
Query: 151   ctggctttagaccatacccactaagtgcattggtgaacaatactatcagagcactgttaa 210
             | || ||| | |||||||| || ||| || ||||||||| ||| |||| | | |||||  
Sbjct: 68835 cagggtttcggccatacccgctgagttcagtggtgaacagtaccatcaaaacgctgttgc 68894

                                                                         
Query: 211   atggttacaacagctactacaagctagaggagaaagatggtgtcatttatcttggatgga 270
             ||  |||||| |||| ||||| ||| ||||||  |||||||||  |||| ||||||||||
Sbjct: 68895 atacttacaatagcttctacaggcttgaggagcgagatggtgttctttaccttggatgga 68954

                                                      
Query: 271   agaacagaaagctggttgtatcttctgcatggcggtgacat 311
             ||||||||    |||||||||||||||||||| | ||||||
Sbjct: 68955 agaacagagtattggttgtatcttctgcatggtgttgacat 68995

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 221/281 (78%)
 Strand = Plus / Minus

                                                                            
Query: 31       ggatgagcacggagcagcactgtgttgcaagagatattgtcaatttaattgcatgtgaag 90
                |||||||| | ||||| |||||||| ||  | || |||||||||||||| |||||||| |
Sbjct: 11090342 ggatgagcgcagagcaacactgtgtggcgcgggacattgtcaatttaatcgcatgtgagg 11090283

                                                                            
Query: 91       gtgcagaaagagtggagaggcacgaaccatttggaaagtggcggtctaggtttgcaatgg 150
                |||| || || || |||||||| ||    |||||||| |||  | | || ||  | ||||
Sbjct: 11090282 gtgctgagagggtagagaggcatgaggtctttggaaaatggaaggcaagattaacgatgg 11090223

                                                                            
Query: 151      ctggctttagaccatacccactaagtgcattggtgaacaatactatcagagcactgttaa 210
                | || ||| | |||||||| || ||| || ||||||||| ||| |||| | | |||||  
Sbjct: 11090222 cagggtttcggccatacccgctgagttcagtggtgaacagtaccatcaaaacgctgttgc 11090163

                                                                            
Query: 211      atggttacaacagctactacaagctagaggagaaagatggtgtcatttatcttggatgga 270
                ||  |||||| |||| ||||| ||| ||||||  |||||||||  |||| ||||||||||
Sbjct: 11090162 atacttacaatagcttctacaggcttgaggagcgagatggtgttctttaccttggatgga 11090103

                                                         
Query: 271      agaacagaaagctggttgtatcttctgcatggcggtgacat 311
                ||||||||    |||||||||||||||||||| | ||||||
Sbjct: 11090102 agaacagagtattggttgtatcttctgcatggtgttgacat 11090062

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>dbj|AK058352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-E08, full
           insert sequence
          Length = 1336

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 221/281 (78%)
 Strand = Plus / Plus

                                                                       
Query: 31  ggatgagcacggagcagcactgtgttgcaagagatattgtcaatttaattgcatgtgaag 90
           |||||||| | ||||| |||||||| ||  | || |||||||||||||| |||||||| |
Sbjct: 611 ggatgagcgcagagcaacactgtgtggcgcgggacattgtcaatttaatcgcatgtgagg 670

                                                                       
Query: 91  gtgcagaaagagtggagaggcacgaaccatttggaaagtggcggtctaggtttgcaatgg 150
           |||| || || || |||||||| ||    |||||||| |||  | | || ||  | ||||
Sbjct: 671 gtgctgagagggtagagaggcatgaggtctttggaaaatggaaggcaagattaacgatgg 730

                                                                       
Query: 151 ctggctttagaccatacccactaagtgcattggtgaacaatactatcagagcactgttaa 210
           | || ||| | |||||||| || ||| || ||||||||| ||| |||| | | |||||  
Sbjct: 731 cagggtttcggccatacccgctgagttcagtggtgaacagtaccatcaaaacgctgttgc 790

                                                                       
Query: 211 atggttacaacagctactacaagctagaggagaaagatggtgtcatttatcttggatgga 270
           ||  |||||| |||| ||||| ||| ||||||  |||||||||  |||| ||||||||||
Sbjct: 791 atacttacaatagcttctacaggcttgaggagcgagatggtgttctttaccttggatgga 850

                                                    
Query: 271 agaacagaaagctggttgtatcttctgcatggcggtgacat 311
           ||||||||    |||||||||||||||||||| | ||||||
Sbjct: 851 agaacagagtattggttgtatcttctgcatggtgttgacat 891

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 221/281 (78%)
 Strand = Plus / Minus

                                                                            
Query: 31       ggatgagcacggagcagcactgtgttgcaagagatattgtcaatttaattgcatgtgaag 90
                |||||||| | ||||| |||||||| ||  | || |||||||||||||| |||||||| |
Sbjct: 11096782 ggatgagcgcagagcaacactgtgtggcgcgggacattgtcaatttaatcgcatgtgagg 11096723

                                                                            
Query: 91       gtgcagaaagagtggagaggcacgaaccatttggaaagtggcggtctaggtttgcaatgg 150
                |||| || || || |||||||| ||    |||||||| |||  | | || ||  | ||||
Sbjct: 11096722 gtgctgagagggtagagaggcatgaggtctttggaaaatggaaggcaagattaacgatgg 11096663

                                                                            
Query: 151      ctggctttagaccatacccactaagtgcattggtgaacaatactatcagagcactgttaa 210
                | || ||| | |||||||| || ||| || ||||||||| ||| |||| | | |||||  
Sbjct: 11096662 cagggtttcggccatacccgctgagttcagtggtgaacagtaccatcaaaacgctgttgc 11096603

                                                                            
Query: 211      atggttacaacagctactacaagctagaggagaaagatggtgtcatttatcttggatgga 270
                ||  |||||| |||| ||||| ||| ||||||  |||||||||  |||| ||||||||||
Sbjct: 11096602 atacttacaatagcttctacaggcttgaggagcgagatggtgttctttaccttggatgga 11096543

                                                         
Query: 271      agaacagaaagctggttgtatcttctgcatggcggtgacat 311
                ||||||||    |||||||||||||||||||| | ||||||
Sbjct: 11096542 agaacagagtattggttgtatcttctgcatggtgttgacat 11096502

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>ref|NM_196102.1| Oryza sativa (japonica cultivar-group) putative SCARECROW gene
            regulator-like (OJ1003C07.9), mRNA
          Length = 1575

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 214/272 (78%)
 Strand = Plus / Plus

                                                                        
Query: 31   ggatgagcacggagcagcactgtgttgcaagagatattgtcaatttaattgcatgtgaag 90
            |||||||| | ||||| |||||||| ||  | || |||||||||||||| |||||||| |
Sbjct: 1298 ggatgagcgcagagcaacactgtgtggcgcgggacattgtcaatttaatcgcatgtgagg 1357

                                                                        
Query: 91   gtgcagaaagagtggagaggcacgaaccatttggaaagtggcggtctaggtttgcaatgg 150
            |||| || || || |||||||| ||    |||||||| |||  | | || ||  | ||||
Sbjct: 1358 gtgctgagagggtagagaggcatgaggtctttggaaaatggaaggcaagattaacgatgg 1417

                                                                        
Query: 151  ctggctttagaccatacccactaagtgcattggtgaacaatactatcagagcactgttaa 210
            | || ||| | |||||||| || ||| || ||||||||| ||| |||| | | |||||  
Sbjct: 1418 cagggtttcggccatacccgctgagttcagtggtgaacagtaccatcaaaacgctgttgc 1477

                                                                        
Query: 211  atggttacaacagctactacaagctagaggagaaagatggtgtcatttatcttggatgga 270
            ||  |||||| |||| ||||| ||| ||||||  |||||||||  |||| ||||||||||
Sbjct: 1478 atacttacaatagcttctacaggcttgaggagcgagatggtgttctttaccttggatgga 1537

                                            
Query: 271  agaacagaaagctggttgtatcttctgcatgg 302
            ||||||||    ||||||||||||||||||||
Sbjct: 1538 agaacagagtattggttgtatcttctgcatgg 1569

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>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence
          Length = 171061

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 243   aaagatggtgtcatttatcttgg 265
             |||||||||||||||||||||||
Sbjct: 58679 aaagatggtgtcatttatcttgg 58657

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>gb|AC108832.10| Mus musculus chromosome 7, clone RP23-242J3, complete sequence
          Length = 185083

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 243    aaagatggtgtcatttatcttgg 265
              |||||||||||||||||||||||
Sbjct: 184216 aaagatggtgtcatttatcttgg 184194

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>emb|AL929062.10| Mouse DNA sequence from clone RP23-342J9 on chromosome X, complete
              sequence
          Length = 212856

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 195    atcagagcactgttaaatggtt 216
              ||||||||||||||||||||||
Sbjct: 152617 atcagagcactgttaaatggtt 152596

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>emb|AL162723.12| Human DNA sequence from clone RP13-428K23 on chromosome X, complete
              sequence
          Length = 192780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 624    attttttctctctgatcttta 644
              |||||||||||||||||||||
Sbjct: 160337 attttttctctctgatcttta 160357

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>gb|AC011416.3| Homo sapiens chromosome 5 clone CTB-88F18, complete sequence
          Length = 142357

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 614    ttgtagtttcattttttctct 634
              |||||||||||||||||||||
Sbjct: 121617 ttgtagtttcattttttctct 121597

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>gb|AC005915.1|AC005915 Homo sapiens chromosome 5, Bac clone 58g14 (LBNL H76), complete sequence
          Length = 151026

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 614    ttgtagtttcattttttctct 634
              |||||||||||||||||||||
Sbjct: 116365 ttgtagtttcattttttctct 116385

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>emb|AL805930.16| Mouse DNA sequence from clone RP23-455B8 on chromosome 4, complete
              sequence
          Length = 174746

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 624    attttttctctctgatcttta 644
              |||||||||||||||||||||
Sbjct: 146641 attttttctctctgatcttta 146661

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>gb|AC147091.2| Pan troglodytes BAC clone RP43-57O16 from 7, complete sequence
          Length = 170233

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 625    ttttttctctctgatctttatgcgaaaa 652
              ||||||||||||||| ||||| ||||||
Sbjct: 107103 ttttttctctctgatgtttatccgaaaa 107076

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>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence
          Length = 87839

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 620   tttcattttttctctctgat 639
             ||||||||||||||||||||
Sbjct: 57712 tttcattttttctctctgat 57731

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>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete
             sequence
          Length = 202526

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   atactatcagagcactgtta 209
             ||||||||||||||||||||
Sbjct: 97082 atactatcagagcactgtta 97063

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>gb|AC145920.1| Pan troglodytes BAC clone RP43-10C15 from 7, complete sequence
          Length = 188373

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 625   ttttttctctctgatctttatgcgaaaa 652
             ||||||||||||||| ||||| ||||||
Sbjct: 27855 ttttttctctctgatgtttatccgaaaa 27882

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>emb|AL513191.4| Human DNA sequence from clone RP11-224F24 on chromosome 1 Contains the 5'
              end of a novel gene novel gene (FLJ34497), complete
              sequence
          Length = 153830

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    gaagcttgtttaggttcttt 345
              ||||||||||||||||||||
Sbjct: 140249 gaagcttgtttaggttcttt 140230

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>emb|AL157770.12| Human DNA sequence from clone RP11-490N5 on chromosome 13 Contains two
             novel genes, complete sequence
          Length = 61615

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   ccaaagaactgtggctgctt 430
             ||||||||||||||||||||
Sbjct: 49694 ccaaagaactgtggctgctt 49675

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>gb|AC092554.3| Papio anubis clone RP41-414G17, complete sequence
          Length = 167543

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   atttatcttggatggaagaa 274
             ||||||||||||||||||||
Sbjct: 23693 atttatcttggatggaagaa 23712

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>emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141E15 on chromosome 20q11.23-12
             Contains the 5' end of GHRH gene for growth hormone
             releasing hormone, the MANBAL gene for mannosidase beta A
             lysosomal-like, the 5' end of the SRC gene for v-src avian
             sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog and a
             CpG island, complete sequence
          Length = 113681

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   gtgacattcttgaatatgga 324
             ||||||||||||||||||||
Sbjct: 83808 gtgacattcttgaatatgga 83827

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>emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chromosome 11 Cntains the 3'
              end of the Nipsnap1 gene for 4-nitrophenylphosphatase
              domain and non-neuronal SNAP25-like protein homolog 1 (C.
              elegans), a novel gene, a ribosomal protein L17 (Rpl17)
              pseudogene, the Nefh gene for neurofilament heavy
              polypeptide, the Ap1b1 gene for adaptor protein complex
              AP-1 beta 1 subunit, the gene for the ortholog of human
              RAS-related protein on chromosome 22, the gene for the
              ortholog of human growth arrest-specific 2 like 1 GAS2L1
              and six CpG islands, complete sequence
          Length = 183758

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 623    cattttttctctctgatctttatg 646
              ||||||||||||||||||| ||||
Sbjct: 107637 cattttttctctctgatctgtatg 107660

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>gb|AC108217.3| Homo sapiens BAC clone RP11-681L8 from 4, complete sequence
          Length = 111201

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   tcaaccctcccctgcgcaca 469
             ||||||||||||||||||||
Sbjct: 33636 tcaaccctcccctgcgcaca 33655

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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 625     ttttttctctctgatcttta 644
               ||||||||||||||||||||
Sbjct: 1342353 ttttttctctctgatcttta 1342334

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>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown, complete
              sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    ccaaagaactgtggctgctt 430
              ||||||||||||||||||||
Sbjct: 150530 ccaaagaactgtggctgctt 150549

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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 299    atggcggtgacattcttgaatatg 322
              ||||||||||| ||||||||||||
Sbjct: 729855 atggcggtgacgttcttgaatatg 729878

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>emb|AJ507388.2|SMO507388 Soybean mosaic virus gene for polyprotein, genomic RNA, strain P
          Length = 9735

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 265 gatggaagaacagaaagctggttg 288
           |||| |||||||||||||||||||
Sbjct: 93  gatgaaagaacagaaagctggttg 70

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>gb|AF272983.1|AF272983 Homo sapiens SRC tyrosine kinase gene, exons 1alpha and 1a,
            alternatively spliced
          Length = 4688

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 305  gtgacattcttgaatatgga 324
            ||||||||||||||||||||
Sbjct: 2587 gtgacattcttgaatatgga 2606

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>gb|AC007285.3|AC007285 Homo sapiens BAC clone RP11-576P10 from 7p11.2-p21, complete sequence
          Length = 140619

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   atttatcttggatggaagaa 274
             ||||||||||||||||||||
Sbjct: 56466 atttatcttggatggaagaa 56485

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>gb|AC150469.3| Atelerix albiventris clone LB4-498C22, complete sequence
          Length = 56862

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 625   ttttttctctctgatcttta 644
             ||||||||||||||||||||
Sbjct: 29928 ttttttctctctgatcttta 29909

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>gb|AC114632.9| Mus musculus chromosome 5, clone RP24-114E20, complete sequence
          Length = 160308

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   tggaagaacagaaagctggt 286
             ||||||||||||||||||||
Sbjct: 98609 tggaagaacagaaagctggt 98590

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>gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, complete sequence
          Length = 172011

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    atactatcagagcactgtta 209
              ||||||||||||||||||||
Sbjct: 129782 atactatcagagcactgtta 129801

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>emb|Z79756.1|CEF53C11 Caenorhabditis elegans Cosmid F53C11, complete sequence
          Length = 34796

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 611   tccttgtagtttcattttttctct 634
             |||||||| |||||||||||||||
Sbjct: 33847 tccttgtaatttcattttttctct 33824

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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 614    ttgtagtttcattttttctc 633
              ||||||||||||||||||||
Sbjct: 986141 ttgtagtttcattttttctc 986122

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>emb|AL359237.4|CNS05TEO Human chromosome 14 DNA sequence BAC R-1152H15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162119

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 526   aggtacaaaccatgctgctgctac 549
             |||||||||||||||| |||||||
Sbjct: 11845 aggtacaaaccatgctcctgctac 11822

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>emb|AL158059.3|CNS01RGK Human chromosome 14 DNA sequence BAC C-2007A10 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 148515

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 526   aggtacaaaccatgctgctgctac 549
             |||||||||||||||| |||||||
Sbjct: 35410 aggtacaaaccatgctcctgctac 35433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,336,508
Number of Sequences: 3902068
Number of extensions: 6336508
Number of successful extensions: 116579
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116270
Number of HSP's gapped (non-prelim): 302
length of query: 666
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 643
effective length of database: 17,143,297,704
effective search space: 11023140423672
effective search space used: 11023140423672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result