ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9l01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 412 bits (208), Expect = e-112 Identities = 355/404 (87%) Strand = Plus / Plus Query: 153 caactaattcaagcccgggagcggcaatatccccatagcactgcttactctaatgaaaag 212 ||||||| ||||||| || | |||||||||||||| ||| ||||||| ||||| ||||| Sbjct: 4176065 caactaactcaagccaggcaatggcaatatccccattgcattgcttaccctaataaaaag 4176124 Query: 213 gaaaaccgagtaaagagcgatgaggccaactccgagtgtcttgttaggccgcatgccgct 272 ||||| |||||||| || ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct: 4176125 aaaaactgagtaaagggcaatgagaccaactccaagtatcttgttaggctgcatgccacc 4176184 Query: 273 ccgtggcagcgtgacaagcgcccagaccaacccagcaacgaggaagctcatcgtgtaaat 332 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||||| Sbjct: 4176185 ccgtggcagcataacaagagcccagatcaatccaccaacgaggaagctcattgtgtaaat 4176244 Query: 333 aagagagcggtcctgcggaagaacgtacgaggtgggtgccgtcgaccaagctccaagcag 392 ||||||| ||| || |||||||| || ||| | ||||| || ||||||||||||||||| Sbjct: 4176245 gagagagctgtcttgaggaagaacataagagtttggtgctgttgaccaagctccaagcag 4176304 Query: 393 cattgatattcctaagccagcaagtgtattgaacataggtcctgcataacatccagacat 452 ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 4176305 catcgatattcccaatccagcaagtgtattgaacataggtcctgcgtagcatccagacat 4176364 Query: 453 agcgatctggacaccatctcctccgttcattgccaaggctacatttgacatcaagtcacc 512 |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 4176365 ggcgatctgcacaccatctcctccattcattgccaaggcaacatttgacattaagtcacc 4176424 Query: 513 catcgaattgccccatgctaacactgttaacccaaggattgaag 556 ||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct: 4176425 catcgaattaccccatgctaacacagttaacccaagaattgaag 4176468
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 412 bits (208), Expect = e-112 Identities = 355/404 (87%) Strand = Plus / Plus Query: 153 caactaattcaagcccgggagcggcaatatccccatagcactgcttactctaatgaaaag 212 ||||||| ||||||| || | |||||||||||||| ||| ||||||| ||||| ||||| Sbjct: 4176174 caactaactcaagccaggcaatggcaatatccccattgcattgcttaccctaataaaaag 4176233 Query: 213 gaaaaccgagtaaagagcgatgaggccaactccgagtgtcttgttaggccgcatgccgct 272 ||||| |||||||| || ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct: 4176234 aaaaactgagtaaagggcaatgagaccaactccaagtatcttgttaggctgcatgccacc 4176293 Query: 273 ccgtggcagcgtgacaagcgcccagaccaacccagcaacgaggaagctcatcgtgtaaat 332 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||||| Sbjct: 4176294 ccgtggcagcataacaagagcccagatcaatccaccaacgaggaagctcattgtgtaaat 4176353 Query: 333 aagagagcggtcctgcggaagaacgtacgaggtgggtgccgtcgaccaagctccaagcag 392 ||||||| ||| || |||||||| || ||| | ||||| || ||||||||||||||||| Sbjct: 4176354 gagagagctgtcttgaggaagaacataagagtttggtgctgttgaccaagctccaagcag 4176413 Query: 393 cattgatattcctaagccagcaagtgtattgaacataggtcctgcataacatccagacat 452 ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 4176414 catcgatattcccaatccagcaagtgtattgaacataggtcctgcgtagcatccagacat 4176473 Query: 453 agcgatctggacaccatctcctccgttcattgccaaggctacatttgacatcaagtcacc 512 |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 4176474 ggcgatctgcacaccatctcctccattcattgccaaggcaacatttgacattaagtcacc 4176533 Query: 513 catcgaattgccccatgctaacactgttaacccaaggattgaag 556 ||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct: 4176534 catcgaattaccccatgctaacacagttaacccaagaattgaag 4176577
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 412 bits (208), Expect = e-112 Identities = 355/404 (87%) Strand = Plus / Plus Query: 153 caactaattcaagcccgggagcggcaatatccccatagcactgcttactctaatgaaaag 212 ||||||| ||||||| || | |||||||||||||| ||| ||||||| ||||| ||||| Sbjct: 76702 caactaactcaagccaggcaatggcaatatccccattgcattgcttaccctaataaaaag 76761 Query: 213 gaaaaccgagtaaagagcgatgaggccaactccgagtgtcttgttaggccgcatgccgct 272 ||||| |||||||| || ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct: 76762 aaaaactgagtaaagggcaatgagaccaactccaagtatcttgttaggctgcatgccacc 76821 Query: 273 ccgtggcagcgtgacaagcgcccagaccaacccagcaacgaggaagctcatcgtgtaaat 332 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||||| Sbjct: 76822 ccgtggcagcataacaagagcccagatcaatccaccaacgaggaagctcattgtgtaaat 76881 Query: 333 aagagagcggtcctgcggaagaacgtacgaggtgggtgccgtcgaccaagctccaagcag 392 ||||||| ||| || |||||||| || ||| | ||||| || ||||||||||||||||| Sbjct: 76882 gagagagctgtcttgaggaagaacataagagtttggtgctgttgaccaagctccaagcag 76941 Query: 393 cattgatattcctaagccagcaagtgtattgaacataggtcctgcataacatccagacat 452 ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 76942 catcgatattcccaatccagcaagtgtattgaacataggtcctgcgtagcatccagacat 77001 Query: 453 agcgatctggacaccatctcctccgttcattgccaaggctacatttgacatcaagtcacc 512 |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 77002 ggcgatctgcacaccatctcctccattcattgccaaggcaacatttgacattaagtcacc 77061 Query: 513 catcgaattgccccatgctaacactgttaacccaaggattgaag 556 ||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct: 77062 catcgaattaccccatgctaacacagttaacccaagaattgaag 77105
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 412 bits (208), Expect = e-112 Identities = 355/404 (87%) Strand = Plus / Plus Query: 153 caactaattcaagcccgggagcggcaatatccccatagcactgcttactctaatgaaaag 212 ||||||| ||||||| || | |||||||||||||| ||| ||||||| ||||| ||||| Sbjct: 4680 caactaactcaagccaggcaatggcaatatccccattgcattgcttaccctaataaaaag 4739 Query: 213 gaaaaccgagtaaagagcgatgaggccaactccgagtgtcttgttaggccgcatgccgct 272 ||||| |||||||| || ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct: 4740 aaaaactgagtaaagggcaatgagaccaactccaagtatcttgttaggctgcatgccacc 4799 Query: 273 ccgtggcagcgtgacaagcgcccagaccaacccagcaacgaggaagctcatcgtgtaaat 332 |||||||||| | ||||| ||||||| ||| ||| |||||||||||||||| |||||||| Sbjct: 4800 ccgtggcagcataacaagagcccagatcaatccaccaacgaggaagctcattgtgtaaat 4859 Query: 333 aagagagcggtcctgcggaagaacgtacgaggtgggtgccgtcgaccaagctccaagcag 392 ||||||| ||| || |||||||| || ||| | ||||| || ||||||||||||||||| Sbjct: 4860 gagagagctgtcttgaggaagaacataagagtttggtgctgttgaccaagctccaagcag 4919 Query: 393 cattgatattcctaagccagcaagtgtattgaacataggtcctgcataacatccagacat 452 ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 4920 catcgatattcccaatccagcaagtgtattgaacataggtcctgcgtagcatccagacat 4979 Query: 453 agcgatctggacaccatctcctccgttcattgccaaggctacatttgacatcaagtcacc 512 |||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 4980 ggcgatctgcacaccatctcctccattcattgccaaggcaacatttgacattaagtcacc 5039 Query: 513 catcgaattgccccatgctaacactgttaacccaaggattgaag 556 ||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct: 5040 catcgaattaccccatgctaacacagttaacccaagaattgaag 5083
>ref|XM_470536.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1920 Score = 408 bits (206), Expect = e-111 Identities = 338/382 (88%) Strand = Plus / Minus Query: 175 ggcaatatccccatagcactgcttactctaatgaaaaggaaaaccgagtaaagagcgatg 234 |||||||||||||| ||| ||||||| ||||| ||||| ||||| |||||||| || ||| Sbjct: 1901 ggcaatatccccattgcattgcttaccctaataaaaagaaaaactgagtaaagggcaatg 1842 Query: 235 aggccaactccgagtgtcttgttaggccgcatgccgctccgtggcagcgtgacaagcgcc 294 || |||||||| ||| ||||||||||| ||||||| | |||||||||| | ||||| ||| Sbjct: 1841 agaccaactccaagtatcttgttaggctgcatgccaccccgtggcagcataacaagagcc 1782 Query: 295 cagaccaacccagcaacgaggaagctcatcgtgtaaataagagagcggtcctgcggaaga 354 |||| ||| ||| |||||||||||||||| |||||||| ||||||| ||| || |||||| Sbjct: 1781 cagatcaatccaccaacgaggaagctcattgtgtaaatgagagagctgtcttgaggaaga 1722 Query: 355 acgtacgaggtgggtgccgtcgaccaagctccaagcagcattgatattcctaagccagca 414 || || ||| | ||||| || |||||||||||||||||||| |||||||| || |||||| Sbjct: 1721 acataagagtttggtgctgttgaccaagctccaagcagcatcgatattcccaatccagca 1662 Query: 415 agtgtattgaacataggtcctgcataacatccagacatagcgatctggacaccatctcct 474 ||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||| Sbjct: 1661 agtgtattgaacataggtcctgcgtagcatccagacatggcgatctgcacaccatctcct 1602 Query: 475 ccgttcattgccaaggctacatttgacatcaagtcacccatcgaattgccccatgctaac 534 || |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 1601 ccattcattgccaaggcaacatttgacattaagtcacccatcgaattaccccatgctaac 1542 Query: 535 actgttaacccaaggattgaag 556 || ||||||||||| ||||||| Sbjct: 1541 acagttaacccaagaattgaag 1520
>gb|AY112326.1| Zea mays CL40761_1 mRNA sequence Length = 1098 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 409 ccagcaagtgtattgaacataggtcctgcataacatccagacatagcgatctg 461 |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| Sbjct: 257 ccagcaagtgtattaaacataggtcccgcataacatccggacatggcaatctg 309 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 232 atgaggccaactccgagtgtcttgttaggc 261 |||||||||||||| ||| ||||||||||| Sbjct: 165 atgaggccaactccaagtatcttgttaggc 194
>ref|XM_453548.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D10912g predicted mRNA Length = 1917 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 495 atttgacatcaagtcacccatcgaattgccccatgc 530 ||||||||||||||||| ||||||||||||||||| Sbjct: 1539 atttgacatcaagtcactgatcgaattgccccatgc 1504
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 495 atttgacatcaagtcacccatcgaattgccccatgc 530 ||||||||||||||||| ||||||||||||||||| Sbjct: 931711 atttgacatcaagtcactgatcgaattgccccatgc 931676
>ref|NM_104289.1| Arabidopsis thaliana cation:cation antiporter AT1G54115 mRNA, complete cds Length = 1935 Score = 52.0 bits (26), Expect = 0.002 Identities = 113/142 (79%) Strand = Plus / Minus Query: 374 tcgaccaagctccaagcagcattgatattcctaagccagcaagtgtattgaacataggtc 433 |||||||||| ||||| | ||| || || ||||| ||| |||| || || ||||| || | Sbjct: 1723 tcgaccaagcaccaagaaacatcgacatacctaacccaacaagcgtgttaaacattggac 1664 Query: 434 ctgcataacatccagacatagcgatctggacaccatctcctccgttcattgccaaggcta 493 |||| || || ||||||| ||||| || || |||||||| |||||||||| ||| || | Sbjct: 1663 ctgcgtagcaaccagacaacgcgatttgtaccccatctccaccgttcattgacaatgcga 1604 Query: 494 catttgacatcaagtcacccat 515 ||||||| ||||||||||| Sbjct: 1603 tgtttgacactaagtcacccat 1582
>emb|BX818713.1|CNS0AE5K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL94ZB08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 614 Score = 52.0 bits (26), Expect = 0.002 Identities = 113/142 (79%) Strand = Plus / Minus Query: 374 tcgaccaagctccaagcagcattgatattcctaagccagcaagtgtattgaacataggtc 433 |||||||||| ||||| | ||| || || ||||| ||| |||| || || ||||| || | Sbjct: 277 tcgaccaagcaccaagaaacatcgacatacctaacccaacaagcgtgttaaacattggac 218 Query: 434 ctgcataacatccagacatagcgatctggacaccatctcctccgttcattgccaaggcta 493 |||| || || ||||||| ||||| || || |||||||| |||||||||| ||| || | Sbjct: 217 ctgcgtagcaaccagacaacgcgatttgtaccccatctccaccgttcattgacaatgcga 158 Query: 494 catttgacatcaagtcacccat 515 ||||||| ||||||||||| Sbjct: 157 tgtttgacactaagtcacccat 136
>gb|AC006577.2|F15I1 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence Length = 89035 Score = 52.0 bits (26), Expect = 0.002 Identities = 113/142 (79%) Strand = Plus / Minus Query: 374 tcgaccaagctccaagcagcattgatattcctaagccagcaagtgtattgaacataggtc 433 |||||||||| ||||| | ||| || || ||||| ||| |||| || || ||||| || | Sbjct: 64174 tcgaccaagcaccaagaaacatcgacatacctaacccaacaagcgtgttaaacattggac 64115 Query: 434 ctgcataacatccagacatagcgatctggacaccatctcctccgttcattgccaaggcta 493 |||| || || ||||||| ||||| || || |||||||| |||||||||| ||| || | Sbjct: 64114 ctgcgtagcaaccagacaacgcgatttgtaccccatctccaccgttcattgacaatgcga 64055 Query: 494 catttgacatcaagtcacccat 515 ||||||| ||||||||||| Sbjct: 64054 tgtttgacactaagtcacccat 64033
>ref|XM_876534.1| PREDICTED: Bos taurus similar to exportin 6, transcript variant 6 (LOC510797), mRNA Length = 2994 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 cactgcttactctaatgaaaaggaaa 216 ||||||||||||||| |||||||||| Sbjct: 2211 cactgcttactctaaggaaaaggaaa 2186
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 aacaacaacagaacagaggaa 104 ||||||||||||||||||||| Sbjct: 24329 aacaacaacagaacagaggaa 24349
>gb|AC121835.2| Mus musculus BAC clone RP24-72L18 from 8, complete sequence Length = 225065 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agctaaatttgaggcagaac 86 |||||||||||||||||||| Sbjct: 146135 agctaaatttgaggcagaac 146154
>gb|AC007008.3| Homo sapiens BAC clone RP11-554O7 from 7, complete sequence Length = 699 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tctcctccgttcattgccaa 488 |||||||||||||||||||| Sbjct: 587 tctcctccgttcattgccaa 568
>gb|AE012259.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 167 of 460 of the complete genome Length = 9926 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 cgcccagaccaacccagcaa 310 |||||||||||||||||||| Sbjct: 1478 cgcccagaccaacccagcaa 1497
>gb|AC006329.5| Homo sapiens BAC clone RP11-132A1 from 7, complete sequence Length = 145253 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tctcctccgttcattgccaa 488 |||||||||||||||||||| Sbjct: 88 tctcctccgttcattgccaa 69
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 cgcccagaccaacccagcaa 310 |||||||||||||||||||| Sbjct: 3197405 cgcccagaccaacccagcaa 3197386
>gb|AC007391.3| Homo sapiens BAC clone RP11-429J10 from 2, complete sequence Length = 183991 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 aacagaggaactcatttcatttgt 118 |||||||| ||||||||||||||| Sbjct: 108741 aacagaggtactcatttcatttgt 108718 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,456,267 Number of Sequences: 3902068 Number of extensions: 4456267 Number of successful extensions: 81145 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81052 Number of HSP's gapped (non-prelim): 93 length of query: 556 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 533 effective length of database: 17,143,297,704 effective search space: 9137377676232 effective search space used: 9137377676232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
