>GILT_HUMAN (P13284) Gamma-interferon-inducible lysosomal thiol reductase|
           precursor (Gamma-interferon-inducible protein IP-30)
          Length = 261

 Score =  117 bits (294), Expect = 2e-26
 Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 6/182 (3%)
 Frame = +1

Query: 16  SLALYYESLCPYCSRFIVTRLAGIFDSGLI--HAVDLLLVPYGNAHVRGANNT--ITCQH 183
           ++ LYYE+LC  C  F++  L   F + L+    +++ LVPYGNA  +  +      CQH
Sbjct: 74  NVTLYYEALCGGCRAFLIREL---FPTWLLVMEILNVTLVPYGNAQEQNVSGRWEFKCQH 130

Query: 184 GPDECLLNNVEACAIEAWPDLNVHFGFINCVEDLVMNRKREEWQSCFQ--KQGLDPKPVM 357
           G +EC  N VEAC ++   D+ + F  I C+E+            C Q    GL P  +M
Sbjct: 131 GEEECKFNKVEACVLDEL-DMELAFLTIVCMEEF--EDMERSLPLCLQLYAPGLSPDTIM 187

Query: 358 ECYNSEHGHKLSLKYGKQTDALVPPHKYVPWVVVDGEPLYEDYENFEAYVCKAYKGHPPK 537
           EC   + G +L     ++TDAL PPH+YVPWV V+G+PL ED       VC+ Y+G  P 
Sbjct: 188 ECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQGKKPD 246

Query: 538 IC 543
           +C
Sbjct: 247 VC 248

>YKJ2_CAEEL (P34276) Hypothetical protein C02D5.2|
          Length = 323

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 47/179 (26%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
 Frame = +1

Query: 19  LALYYESLCPYCSRFIVTRLAGIFDS-GLIHAVDLLLVPYGNAHV--RGANNTITCQHGP 189
           L +Y E+ CP  SRF   +L   +D  G ++ ++L ++P+G A    +G +    CQHGP
Sbjct: 141 LDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPFGKARCTEKGNDFECQCQHGP 200

Query: 190 DECLLNNVEACAIEAWPDLNVHFGFINCVE-----DLVMNRKREEWQSCFQKQGLDPKPV 354
            EC +N +  C I+ +   + +   + C++     D  M    E + S +++       +
Sbjct: 201 TECQINQLMNCVIDRFGFPHRYLPGVLCMQGKYSLDEAMKCVTENYPSEYER-------M 253

Query: 355 MECYNSEHGHKLSLKYGKQTDALVPPHKYVPWVVVDGEPLYEDYENFEAYVCKAYKGHP 531
            EC +   G +L    G++T +L P   ++PW+V++G    +   +    VC+A +  P
Sbjct: 254 RECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDLTQNVCEAMQPMP 312

>TPIS_HELVI (P55275) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase) (Fragment)
          Length = 215

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 512 RRTRAILPRFAKGWAVTTQSYNRWWEVGNGVT 607
           R+T+A+LP     WA    +Y   W +G G T
Sbjct: 132 RQTKALLPAIGNNWANVVLAYEPVWAIGTGKT 163

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 583 PPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERT 437
           PP+ R  S  P   K     P  P +R+   S  P+R   H PPP +R+
Sbjct: 612 PPIQRRYSPSPP-PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS 659

>COQ5_CHICK (Q5ZLL5) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 311

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 13/132 (9%)
 Frame = +1

Query: 247 NVHFGFINCVEDLVMNRKREEWQSCFQKQGLDPKPVMECYNSEHGHKLS----------- 393
           ++ F F+N V  +   R+R+  Q     Q L  + + + Y  E  + L            
Sbjct: 102 DIAFRFLNYVRSV---RERQLQQKLRHHQNLSWQEISKSYQEEKSNPLGDSQVVVCDINK 158

Query: 394 --LKYGKQTDALVPPHKYVPWVVVDGEPLYEDYENFEAYVCKAYKGHPPKICQGLGRDYP 567
             LK GKQ    +   + + WV+ + E L+ D + F+ Y       +  +I   L   Y 
Sbjct: 159 EMLKAGKQKAQHLGYSEGLSWVLGNAEELHFDDDKFDVYTIAFGIRNVTRIDLALQEAYR 218

Query: 568 IVQQVVGGRQRC 603
           +++   GGR  C
Sbjct: 219 VLKP--GGRFLC 228

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 583 PPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERT 437
           PP+ R  S  P   K     P  P +R+   S  P+R   H PPP +R+
Sbjct: 617 PPIQRRYSPSPP-PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS 664

>NUC1_YEAST (P08466) Mitochondrial nuclease (EC 3.1.30.-)|
          Length = 329

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +1

Query: 52  CSRFIVTRLAGI-FDSGLIHAVDLLLVPYGNAHVRGANNTITCQHGPDECLLNNVEACAI 228
           CSR +++ L G+   +GL +   LLL    N H       I   + P +   +N+++ + 
Sbjct: 2   CSRILLSGLVGLGAGTGLTY---LLL----NKH--SPTQIIETPYPPTQKPNSNIQSHSF 52

Query: 229 EAWPDLNVHFGFINCVEDLVMNRKREEWQSCFQKQGLDPKPVME 360
              P     +GF   + DL   + REE+ SC+ +Q  +P  V+E
Sbjct: 53  NVDPSGFFKYGFPGPIHDL---QNREEFISCYNRQTQNPYWVLE 93

>GH310_ORYSA (Q6ZLA7) Putative indole-3-acetic acid-amido synthetase GH3.10 (EC|
           6.3.2.-) (Auxin-responsive GH3-like protein 10)
           (OsGH3-10)
          Length = 478

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
 Frame = +1

Query: 13  ASLALYYESLCPYCSRFIVTRLAGIFDSGLIHAVDLLLVPYGNAHV---RGANNTITCQH 183
           AS ++Y + LC  C R  V R+  +F + L+ A+  L + +         G  N      
Sbjct: 210 ASQSMYAQMLCGLCQRHDVLRVGAVFAAALVRAIRFLQLNWAQLAADIETGELNPRVTDP 269

Query: 184 GPDECLLNNVEACAIEAWP 240
              EC   +        WP
Sbjct: 270 SDRECSRGDWTGIVTRLWP 288

>GH34_ARATH (Q9LQ68) Indole-3-acetic acid-amido synthetase GH3.4 (EC 6.3.2.-)|
           (Auxin-responsive GH3-like protein 4) (AtGH3-4)
           (CF4-like protein)
          Length = 597

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  ASLALYYESLCPYCSRFIVTRLAGIFDSGLIHAVDLL 123
           +S ++Y + LC    R  V RL  +F SGL+ A+  L
Sbjct: 204 SSQSMYTQMLCGLLMRHEVNRLGAVFPSGLLRAISFL 240

>NOS3_PIG (Q28969) Nitric-oxide synthase, endothelial (EC 1.14.13.39)|
           (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS)
           (eNOS) (Constitutive NOS) (cNOS)
          Length = 1204

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = -1

Query: 541 KSWEDGPCTPCR--------RKLQSSRNPRRAARHQPPPMERTCAEAQ 422
           +S +DGPCTP R        RKLQS  +P       PPP E+  ++A+
Sbjct: 88  QSQQDGPCTPRRCLGSLVLPRKLQSRPSP------GPPPAEQLLSQAR 129

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 583 PPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERT 437
           PP+ R  S  P   K     P  P +R+   S  P+R   H PPP +R+
Sbjct: 598 PPIQRRYSPSPP-PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRS 645

>POLB_CHPVU (Q9YTU2) ORFB polyprotein [Contains: Papain-like protease p48 (EC|
            3.4.22.-); Putative RNA-directed RNA polymerase/Helicase
            (EC 2.7.7.48) (EC 3.6.1.-)]
          Length = 3164

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 527  ILPRFAKGWAVTTQSYNRWWEVG-NGVTYNSGDFEL 631
            + PR+   + VT  +YN WW +  +G+ Y S  FEL
Sbjct: 1220 VTPRWMLPFIVTVSAYNWWWPLSQDGLNYASKRFEL 1255

>SYT14_MOUSE (Q7TN84) Synaptotagmin-14 (Synaptotagmin XIV) (SytXIV)|
          Length = 555

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = -1

Query: 538 SWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERTCAEAQVHQSVSHT*AKACGHAHCCST 359
           S EDG C      +Q  R        QPPP +       +  + S      C  +HC ++
Sbjct: 144 SMEDGNC------IQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDAKCEISHCSNS 197

Query: 358 P*QAWGQAPVSGST 317
           P  ++ + P  GST
Sbjct: 198 PRCSFNKCPSEGST 211

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 583 PPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERTCAEAQ 422
           PP+ R  S  P   +     P  P RR   S ++ RR + H PPP +R+   A+
Sbjct: 591 PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPQSKRRVS-HSPPPKQRSSPAAK 643

>GH38_ORYSA (Q7XIN9) Probable indole-3-acetic acid-amido synthetase GH3.8 (EC|
           6.3.2.-) (Auxin-responsive GH3-like protein 8) (OsGH3-8)
          Length = 605

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 22  ALYYESLCPYCSRFIVTRLAGIFDSGLIHAVDLL 123
           ++Y + +C  C R  V RL  +F SGL+ A+  L
Sbjct: 215 SMYAQMVCGLCQRNDVLRLGAVFASGLLRAIRFL 248

>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 29/108 (26%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
 Frame = -1

Query: 586 PPPVVRL----GSHGPALGKSWEDGPCTPCRRKLQSSRNPRRAARHQPPPMERTCAEAQV 419
           PPP + L    G  GP  G+S    P  P     Q  + P +    Q PP  +     Q 
Sbjct: 34  PPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQP 93

Query: 418 HQSVSHT*AKACGHAHCCSTP*QAWGQAPVSGSTTAIPRACGSSPGLP 275
           HQ       +        S P  A G  P  G  +A P +  + P  P
Sbjct: 94  HQQ-----QQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATP 136

>GH32_ARATH (Q9SZT9) Indole-3-acetic acid-amido synthetase GH3.2 (EC 6.3.2.-)|
           (Auxin-responsive GH3-like protein 2) (AtGH3-2)
           (YADOKARI 1 protein)
          Length = 549

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  ASLALYYESLCPYCSRFIVTRLAGIFDSGLIHAVDLL 123
           +S ++Y + LC    R  V RL  +F SGL+ A+  L
Sbjct: 206 SSQSMYAQMLCGLLMRHEVLRLGAVFASGLLRAISFL 242

>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 20) (ADAM-TS
            20) (ADAM-TS20)
          Length = 1911

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
 Frame = -1

Query: 586  PPPVVRLGSHGPALGKSWEDGPCTPCRRKLQSSRNPRRA---ARHQPPPMERTCAEAQVH 416
            PP V++   H      SW   P T C       R  R      + Q    +  C  +QV 
Sbjct: 1405 PPSVIQCHMHACPADVSWHQEPWTSCSASCGKGRKYREVFCIDQFQRKLEDTNC--SQVQ 1462

Query: 415  QSVSHT*AKACGHAHCCSTP*QAWGQAPVS 326
            +  +H   KAC    C S    +W +  V+
Sbjct: 1463 KPPTH---KACRSVRCPSWKANSWNECSVT 1489

>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/67 (35%), Positives = 28/67 (41%)
 Frame = -1

Query: 469 ARHQPPPMERTCAEAQVHQSVSHT*AKACGHAHCCSTP*QAWGQAPVSGSTTAIPRACGS 290
           AR  P P   TCA      S S   +  C     CS+P  AW  A  +G T     A  +
Sbjct: 193 ARTAPTPAP-TCA------SPSAAASSCCRRRRACSSPTTAWSGACGAGPTA----ATAA 241

Query: 289 SPGLPRS 269
            PG PRS
Sbjct: 242 QPGKPRS 248

>YFU3_BACST (Q04730) Hypothetical protein in fumA 3'region (ORF3) (Fragment)|
          Length = 89

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 447 WNVLVRRHKCISLFPILERKLVAMLTVVALHDRLGVKPLFLEARLPFLAL 298
           WNV ++         +LER  +  L  V +H R  + PL+ E   PF+A+
Sbjct: 2   WNVTIKAAPPYDFDRVLERLSLDPLNKVDVHKRTVLVPLYSEKEEPFVAV 51

>GH33_ARATH (O22190) Indole-3-acetic acid-amido synthetase GH3.3 (EC 6.3.2.-)|
           (Auxin-responsive GH3-like protein 3) (AtGH3-3)
          Length = 595

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  ASLALYYESLCPYCSRFIVTRLAGIFDSGLIHAVDLL 123
           +S ++Y + LC    R  V RL  +F SGL+ A+  L
Sbjct: 205 SSQSMYTQMLCGLLMRHEVLRLGAVFASGLLRAIGFL 241

>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.2)
            (Calcium channel, L type, alpha-1 polypeptide isoform 5)
            (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
 Frame = -1

Query: 565  GSHGPALGKSWE------DGPCTPCRRKLQSSRNP--RRAARHQPPPMERT 437
            G  GPA G   E       GP   C R+ +SS  P  R  ARH+ PP + T
Sbjct: 950  GKEGPASGTRGERRARHRTGP-RACPREAESSEEPARRHRARHKAPPTQET 999

>RFBC_MYXXA (Q50864) O-antigen biosynthesis protein rfbC|
          Length = 1275

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
 Frame = +1

Query: 439  YVPWVVVDGEPLYEDYENFEAYVCKAYKGHPPK----ICQGLGRDYPIVQQVVGGRQRC- 603
            Y PW+   G+P Y  +    A  C   + HP        + LGRD P  +  V G QR  
Sbjct: 815  YRPWLGPKGDPYYNPHLTLTATDC-GLRRHPEDGEQLAVRTLGRDVPSARD-VRGEQRAR 872

Query: 604  -------HLQLWRF 624
                   HL+ W F
Sbjct: 873  AQRHLIEHLEAWDF 886

>POLB_CHPVE (Q04350) ORFB polyprotein [Contains: Papain-like protease p48 (EC|
            3.4.22.-); Putative RNA-directed RNA polymerase/Helicase
            (EC 2.7.7.48) (EC 3.6.1.-)]
          Length = 3165

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 527  ILPRFAKGWAVTTQSYNRWWEVG-NGVTYNSGDFEL 631
            + PR+   + VT   YN WW +  +G+ Y S  FEL
Sbjct: 1220 VTPRWMLPFIVTVSVYNWWWPLSQDGLNYASKRFEL 1255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,619,956
Number of Sequences: 219361
Number of extensions: 2031016
Number of successful extensions: 6491
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6472
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)