ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags14f05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473161.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 176 bits (89), Expect = 4e-41 Identities = 284/350 (81%) Strand = Plus / Plus Query: 30 ccaagaggccggcttgnaggcgtaaactcggctgcgatcgctttctacaaccggctgatc 89 |||||||| ||| ||| ||| || || ||||| | ||||| ||||||||||| |||||| Sbjct: 292 ccaagaggtcggtttggaggagttaattcggcaggaatcgccttctacaaccgtctgatc 351 Query: 90 gccgcgctccttgagaaagggatagagccgttcgtgacgctgcaccacttcgatctgccg 149 | ||||||||| ||||||| ||| | || |||||||| ||| |||| ||||| | || Sbjct: 352 gacgcgctcctacagaaaggcatacaaccattcgtgacactgaaccatttcgacattcca 411 Query: 150 cacgagctggagacccggcacggcggttggctgggcgccggaatcagggaggagttcggc 209 || ||| |||| | ||| | ||||| ||| ||||||| |||||| |||||||||| || Sbjct: 412 caagagttggaaatccgatatggcggctggttgggcgctggaatccgggaggagtttggg 471 Query: 210 tactacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctc 269 || ||| ||||||||||||||||||| ||||| || || |||| ||||||||||||| || Sbjct: 472 tattactcggacgtgtgcttcaaggctttcggtgatcgtgtcaggttctggacgacgttc 531 Query: 270 aacgagcccaacctcttcaccaagtttgcctacatgctgggccagtacccgnccaagcac 329 |||||||| ||||| |||||||||| | |||||||||| |||||| | || | Sbjct: 532 aacgagccgaacctgatcaccaagttccaattcatgctgggcgcgtaccctccgaaccgg 591 Query: 330 tgctccccgccgttcgggacctgcaacagcggcgactctngccgggagcc 379 ||||||||||||||||| | |||||||||||||||||| |||||||||| Sbjct: 592 tgctccccgccgttcggcagctgcaacagcggcgactcgcgccgggagcc 641
>ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1551 Score = 170 bits (86), Expect = 2e-39 Identities = 287/355 (80%) Strand = Plus / Plus Query: 30 ccaagaggccggcttgnaggcgtaaactcggctgcgatcgctttctacaaccggctgatc 89 |||||||||||||||| ||| || || || || | || || ||||||||||| |||||| Sbjct: 343 ccaagaggccggcttggaggagttaattcagcaggaattgccttctacaaccgtctgatc 402 Query: 90 gccgcgctccttgagaaagggatagagccgttcgtgacgctgcaccacttcgatctgccg 149 ||| |||||| ||||||| ||| | || |||||||| ||| | || ||||| | ||| Sbjct: 403 aacgcactccttcagaaaggcatacaaccattcgtgactctgaatcatttcgacattccg 462 Query: 150 cacgagctggagacccggcacggcggttggctgggcgccggaatcagggaggagttcggc 209 ||||| |||||||||||| ||||||| ||| | ||||| | |||| |||||||||| | Sbjct: 463 cacgaactggagacccggtacggcggctggttaggcgctgcaatccgggaggagtttgag 522 Query: 210 tactacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctc 269 |||||| ||||||| |||||||| ||||||||||| ||||||| ||||||||||||| || Sbjct: 523 tactactcggacgtctgcttcaatgcgttcggcgatcgggtcaggttctggacgacgttc 582 Query: 270 aacgagcccaacctcttcaccaagtttgcctacatgctgggccagtacccgnccaagcac 329 |||||||| ||||| | ||||| | ||||| ||||| ||| ||| | || ||| Sbjct: 583 aacgagccgaacctgtccaccaggcaccagtacattctgggagagttccctccgaaccac 642 Query: 330 tgctccccgccgttcgggacctgcaacagcggcgactctngccgggagccctacg 384 ||||||||||||||||| | ||||| ||| |||||||| |||||||||| |||| Sbjct: 643 tgctccccgccgttcggcaactgcagcagtggcgactcgcgccgggagccgtacg 697
>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full insert sequence Length = 1827 Score = 170 bits (86), Expect = 2e-39 Identities = 287/355 (80%) Strand = Plus / Plus Query: 30 ccaagaggccggcttgnaggcgtaaactcggctgcgatcgctttctacaaccggctgatc 89 |||||||||||||||| ||| || || || || | || || ||||||||||| |||||| Sbjct: 407 ccaagaggccggcttggaggagttaattcagcaggaattgccttctacaaccgtctgatc 466 Query: 90 gccgcgctccttgagaaagggatagagccgttcgtgacgctgcaccacttcgatctgccg 149 ||| |||||| ||||||| ||| | || |||||||| ||| | || ||||| | ||| Sbjct: 467 aacgcactccttcagaaaggcatacaaccattcgtgactctgaatcatttcgacattccg 526 Query: 150 cacgagctggagacccggcacggcggttggctgggcgccggaatcagggaggagttcggc 209 ||||| |||||||||||| ||||||| ||| | ||||| | |||| |||||||||| | Sbjct: 527 cacgaactggagacccggtacggcggctggttaggcgctgcaatccgggaggagtttgag 586 Query: 210 tactacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctc 269 |||||| ||||||| |||||||| ||||||||||| ||||||| ||||||||||||| || Sbjct: 587 tactactcggacgtctgcttcaatgcgttcggcgatcgggtcaggttctggacgacgttc 646 Query: 270 aacgagcccaacctcttcaccaagtttgcctacatgctgggccagtacccgnccaagcac 329 |||||||| ||||| | ||||| | ||||| ||||| ||| ||| | || ||| Sbjct: 647 aacgagccgaacctgtccaccaggcaccagtacattctgggagagttccctccgaaccac 706 Query: 330 tgctccccgccgttcgggacctgcaacagcggcgactctngccgggagccctacg 384 ||||||||||||||||| | ||||| ||| |||||||| |||||||||| |||| Sbjct: 707 tgctccccgccgttcggcaactgcagcagtggcgactcgcgccgggagccgtacg 761
>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full insert sequence Length = 2770 Score = 165 bits (83), Expect = 1e-37 Identities = 255/313 (81%) Strand = Plus / Plus Query: 72 ttctacaaccggctgatcgccgcgctccttgagaaagggatagagccgttcgtgacgctg 131 ||||||||||| |||||| ||| |||||| ||||||| ||| | || |||||||| ||| Sbjct: 1673 ttctacaaccgtctgatcaacgcactccttcagaaaggcatacaaccattcgtgactctg 1732 Query: 132 caccacttcgatctgccgcacgagctggagacccggcacggcggttggctgggcgccgga 191 | || ||||| | |||||||| |||||||||||| ||||||| ||| | ||||| | | Sbjct: 1733 aatcatttcgacattccgcacgaactggagacccggtacggcggctggttaggcgctgca 1792 Query: 192 atcagggaggagttcggctactacgcggacgtgtgcttcaaggcgttcggcgaccgggtc 251 ||| |||||||||| | |||||| ||||||| |||||||| ||||||||||| |||||| Sbjct: 1793 atccgggaggagtttgagtactactcggacgtctgcttcaatgcgttcggcgatcgggtc 1852 Query: 252 aagttctggacgacgctcaacgagcccaacctcttcaccaagtttgcctacatgctgggc 311 | ||||||||||||| |||||||||| ||||| | ||||| | ||||| ||||| Sbjct: 1853 aggttctggacgacgttcaacgagccgaacctgtccaccaggcaccagtacattctggga 1912 Query: 312 cagtacccgnccaagcactgctccccgccgttcgggacctgcaacagcggcgactctngc 371 ||| ||| | || |||||||||||||||||||| | ||||| ||| |||||||| || Sbjct: 1913 gagttccctccgaaccactgctccccgccgttcggcaactgcagcagtggcgactcgcgc 1972 Query: 372 cgggagccctacg 384 |||||||| |||| Sbjct: 1973 cgggagccgtacg 1985
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence Length = 130718 Score = 137 bits (69), Expect = 3e-29 Identities = 157/187 (83%) Strand = Plus / Plus Query: 193 tcagggaggagttcggctactacgcggacgtgtgcttcaaggcgttcggcgaccgggtca 252 ||||||||||||| || || ||| ||||||||||||||||||| ||||| || || |||| Sbjct: 27624 tcagggaggagtttgggtattactcggacgtgtgcttcaaggctttcggtgatcgtgtca 27683 Query: 253 agttctggacgacgctcaacgagcccaacctcttcaccaagtttgcctacatgctgggcc 312 ||||||||||||| |||||||||| ||||| |||||||||| | |||||||||| Sbjct: 27684 ggttctggacgacgttcaacgagccgaacctgatcaccaagttccaattcatgctgggcg 27743 Query: 313 agtacccgnccaagcactgctccccgccgttcgggacctgcaacagcggcgactctngcc 372 |||||| | || | ||||||||||||||||| | |||||||||||||||||| ||| Sbjct: 27744 cgtaccctccgaaccggtgctccccgccgttcggcagctgcaacagcggcgactcgcgcc 27803 Query: 373 gggagcc 379 ||||||| Sbjct: 27804 gggagcc 27810 Score = 115 bits (58), Expect = 1e-22 Identities = 158/192 (82%) Strand = Plus / Plus Query: 193 tcagggaggagttcggctactacgcggacgtgtgcttcaaggcgttcggcgaccgggtca 252 ||||||||||||| | |||||| ||||||| |||||||| ||||||||||| ||||||| Sbjct: 17678 tcagggaggagtttgagtactactcggacgtctgcttcaatgcgttcggcgatcgggtca 17737 Query: 253 agttctggacgacgctcaacgagcccaacctcttcaccaagtttgcctacatgctgggcc 312 ||||||||||||| |||||||||| ||||| | ||||| | ||||| ||||| Sbjct: 17738 ggttctggacgacgttcaacgagccgaacctgtccaccaggcaccagtacattctgggag 17797 Query: 313 agtacccgnccaagcactgctccccgccgttcgggacctgcaacagcggcgactctngcc 372 ||| ||| | || |||||||||||||||||||| | ||||| ||| |||||||| ||| Sbjct: 17798 agttccctccgaaccactgctccccgccgttcggcaactgcagcagtggcgactcgcgcc 17857 Query: 373 gggagccctacg 384 ||||||| |||| Sbjct: 17858 gggagccgtacg 17869 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 234 gcgttcggcgaccgggtcaagttctggacgacgctcaacgagcccaac 281 |||||||||||||| ||||||| |||||| || |||||||||||||| Sbjct: 39277 gcgttcggcgaccgcgtcaagtactggaccaccttcaacgagcccaac 39230 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 66 atcgctttctacaaccggctgatcgccgcgctccttgagaaagg 109 ||||| ||||||||||| ||||||| ||||||||| ||||||| Sbjct: 27265 atcgccttctacaaccgtctgatcgacgcgctcctacagaaagg 27308 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 ccgcacgagctggagacccggcacggcgg 175 |||||||| |||||||||||| ||||||| Sbjct: 17533 ccgcacgaactggagacccggtacggcgg 17561
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05, complete sequence Length = 158601 Score = 137 bits (69), Expect = 3e-29 Identities = 157/187 (83%) Strand = Plus / Plus Query: 193 tcagggaggagttcggctactacgcggacgtgtgcttcaaggcgttcggcgaccgggtca 252 ||||||||||||| || || ||| ||||||||||||||||||| ||||| || || |||| Sbjct: 134095 tcagggaggagtttgggtattactcggacgtgtgcttcaaggctttcggtgatcgtgtca 134154 Query: 253 agttctggacgacgctcaacgagcccaacctcttcaccaagtttgcctacatgctgggcc 312 ||||||||||||| |||||||||| ||||| |||||||||| | |||||||||| Sbjct: 134155 ggttctggacgacgttcaacgagccgaacctgatcaccaagttccaattcatgctgggcg 134214 Query: 313 agtacccgnccaagcactgctccccgccgttcgggacctgcaacagcggcgactctngcc 372 |||||| | || | ||||||||||||||||| | |||||||||||||||||| ||| Sbjct: 134215 cgtaccctccgaaccggtgctccccgccgttcggcagctgcaacagcggcgactcgcgcc 134274 Query: 373 gggagcc 379 ||||||| Sbjct: 134275 gggagcc 134281 Score = 115 bits (58), Expect = 1e-22 Identities = 158/192 (82%) Strand = Plus / Plus Query: 193 tcagggaggagttcggctactacgcggacgtgtgcttcaaggcgttcggcgaccgggtca 252 ||||||||||||| | |||||| ||||||| |||||||| ||||||||||| ||||||| Sbjct: 124149 tcagggaggagtttgagtactactcggacgtctgcttcaatgcgttcggcgatcgggtca 124208 Query: 253 agttctggacgacgctcaacgagcccaacctcttcaccaagtttgcctacatgctgggcc 312 ||||||||||||| |||||||||| ||||| | ||||| | ||||| ||||| Sbjct: 124209 ggttctggacgacgttcaacgagccgaacctgtccaccaggcaccagtacattctgggag 124268 Query: 313 agtacccgnccaagcactgctccccgccgttcgggacctgcaacagcggcgactctngcc 372 ||| ||| | || |||||||||||||||||||| | ||||| ||| |||||||| ||| Sbjct: 124269 agttccctccgaaccactgctccccgccgttcggcaactgcagcagtggcgactcgcgcc 124328 Query: 373 gggagccctacg 384 ||||||| |||| Sbjct: 124329 gggagccgtacg 124340 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 234 gcgttcggcgaccgggtcaagttctggacgacgctcaacgagcccaac 281 |||||||||||||| ||||||| |||||| || |||||||||||||| Sbjct: 145748 gcgttcggcgaccgcgtcaagtactggaccaccttcaacgagcccaac 145701 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 66 atcgctttctacaaccggctgatcgccgcgctccttgagaaagg 109 ||||| ||||||||||| ||||||| ||||||||| ||||||| Sbjct: 133736 atcgccttctacaaccgtctgatcgacgcgctcctacagaaagg 133779 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 ccgcacgagctggagacccggcacggcgg 175 |||||||| |||||||||||| ||||||| Sbjct: 124004 ccgcacgaactggagacccggtacggcgg 124032
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 137 bits (69), Expect = 3e-29 Identities = 157/187 (83%) Strand = Plus / Plus Query: 193 tcagggaggagttcggctactacgcggacgtgtgcttcaaggcgttcggcgaccgggtca 252 ||||||||||||| || || ||| ||||||||||||||||||| ||||| || || |||| Sbjct: 25647897 tcagggaggagtttgggtattactcggacgtgtgcttcaaggctttcggtgatcgtgtca 25647956 Query: 253 agttctggacgacgctcaacgagcccaacctcttcaccaagtttgcctacatgctgggcc 312 ||||||||||||| |||||||||| ||||| |||||||||| | |||||||||| Sbjct: 25647957 ggttctggacgacgttcaacgagccgaacctgatcaccaagttccaattcatgctgggcg 25648016 Query: 313 agtacccgnccaagcactgctccccgccgttcgggacctgcaacagcggcgactctngcc 372 |||||| | || | ||||||||||||||||| | |||||||||||||||||| ||| Sbjct: 25648017 cgtaccctccgaaccggtgctccccgccgttcggcagctgcaacagcggcgactcgcgcc 25648076 Query: 373 gggagcc 379 ||||||| Sbjct: 25648077 gggagcc 25648083 Score = 115 bits (58), Expect = 1e-22 Identities = 158/192 (82%) Strand = Plus / Plus Query: 193 tcagggaggagttcggctactacgcggacgtgtgcttcaaggcgttcggcgaccgggtca 252 ||||||||||||| | |||||| ||||||| |||||||| ||||||||||| ||||||| Sbjct: 25637951 tcagggaggagtttgagtactactcggacgtctgcttcaatgcgttcggcgatcgggtca 25638010 Query: 253 agttctggacgacgctcaacgagcccaacctcttcaccaagtttgcctacatgctgggcc 312 ||||||||||||| |||||||||| ||||| | ||||| | ||||| ||||| Sbjct: 25638011 ggttctggacgacgttcaacgagccgaacctgtccaccaggcaccagtacattctgggag 25638070 Query: 313 agtacccgnccaagcactgctccccgccgttcgggacctgcaacagcggcgactctngcc 372 ||| ||| | || |||||||||||||||||||| | ||||| ||| |||||||| ||| Sbjct: 25638071 agttccctccgaaccactgctccccgccgttcggcaactgcagcagtggcgactcgcgcc 25638130 Query: 373 gggagccctacg 384 ||||||| |||| Sbjct: 25638131 gggagccgtacg 25638142 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 234 gcgttcggcgaccgggtcaagttctggacgacgctcaacgagcccaac 281 |||||||||||||| ||||||| |||||| || |||||||||||||| Sbjct: 25659550 gcgttcggcgaccgcgtcaagtactggaccaccttcaacgagcccaac 25659503 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Plus Query: 66 atcgctttctacaaccggctgatcgccgcgctccttgagaaagg 109 ||||| ||||||||||| ||||||| ||||||||| ||||||| Sbjct: 25647538 atcgccttctacaaccgtctgatcgacgcgctcctacagaaagg 25647581 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 ccgcacgagctggagacccggcacggcgg 175 |||||||| |||||||||||| ||||||| Sbjct: 25637806 ccgcacgaactggagacccggtacggcgg 25637834
>gb|AC137618.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0090H02, complete sequence Length = 135231 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 213 tacgcggacgtgtgcttcaaggcgttcggcgaccgggt 250 ||||||||||||||||||| || ||||||||||||||| Sbjct: 81077 tacgcggacgtgtgcttcagggagttcggcgaccgggt 81114 Score = 46.1 bits (23), Expect = 0.091 Identities = 29/31 (93%) Strand = Plus / Plus Query: 216 gcggacgtgtgcttcaaggcgttcggcgacc 246 |||||||||||||||| || ||||||||||| Sbjct: 101413 gcggacgtgtgcttcagggagttcggcgacc 101443
>gb|AC121366.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0111K12, complete sequence Length = 127901 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 213 tacgcggacgtgtgcttcaaggcgttcggcgaccgggt 250 ||||||||||||||||||| || ||||||||||||||| Sbjct: 127624 tacgcggacgtgtgcttcagggagttcggcgaccgggt 127661
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 213 tacgcggacgtgtgcttcaaggcgttcggcgaccgggt 250 ||||||||||||||||||| || ||||||||||||||| Sbjct: 17453727 tacgcggacgtgtgcttcagggagttcggcgaccgggt 17453764 Score = 46.1 bits (23), Expect = 0.091 Identities = 29/31 (93%) Strand = Plus / Plus Query: 216 gcggacgtgtgcttcaaggcgttcggcgacc 246 |||||||||||||||| || ||||||||||| Sbjct: 17474063 gcggacgtgtgcttcagggagttcggcgacc 17474093
>dbj|AK071469.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097J01, full insert sequence Length = 2115 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 213 tacgcggacgtgtgcttcaaggcgttcggcgaccgggt 250 ||||||||||||||||||| || ||||||||||||||| Sbjct: 831 tacgcggacgtgtgcttcagggagttcggcgaccgggt 868
>ref|XM_473162.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1518 Score = 56.0 bits (28), Expect = 9e-05 Identities = 43/48 (89%) Strand = Plus / Plus Query: 234 gcgttcggcgaccgggtcaagttctggacgacgctcaacgagcccaac 281 |||||||||||||| ||||||| |||||| || |||||||||||||| Sbjct: 541 gcgttcggcgaccgcgtcaagtactggaccaccttcaacgagcccaac 588
>ref|XM_787676.1| PREDICTED: Strongylocentrotus purpuratus similar to Lactase-phlorizin hydrolase precursor (Lactase-glycosylceramidase) (LOC587972), mRNA Length = 1647 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctgga 261 |||| |||||| | ||||||||| ||||||| |||||||||||||||||| Sbjct: 542 actatgcggacctttgcttcaagaggttcggcaaccgggtcaagttctgga 592
>ref|XM_557100.1| Anopheles gambiae str. PEST ENSANGP00000025519 (ENSANGG00000003322), partial mRNA Length = 1497 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 240 ggcgaccgggtcaagttctggacgacgctcaacgagcc 277 ||||| ||||||||| ||||||||||| |||||||||| Sbjct: 535 ggcgatcgggtcaagatctggacgacgatcaacgagcc 572
>ref|XM_316461.2| Anopheles gambiae str. PEST ENSANGP00000004185 (ENSANGG00000003322), partial mRNA Length = 1500 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 240 ggcgaccgggtcaagttctggacgacgctcaacgagcc 277 ||||| ||||||||| ||||||||||| |||||||||| Sbjct: 559 ggcgatcgggtcaagatctggacgacgatcaacgagcc 596
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Plus Query: 222 gtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctcaacgagcc 277 ||||||||| || |||||||||||| |||||||||||| | || |||||||||| Sbjct: 148690 gtgtgcttccgggagttcggcgaccgtgtcaagttctgggccaccttcaacgagcc 148745
>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence Length = 145575 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 222 gtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctcaacgagcc 277 ||||||||| || |||||||||||| |||||||||||| | || |||||||||| Sbjct: 120661 gtgtgcttccgggagttcggcgaccgtgtcaagttctgggccaccttcaacgagcc 120606
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 222 gtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctcaacgagcc 277 ||||||||| || |||||||||||| |||||||||||| | || |||||||||| Sbjct: 18722238 gtgtgcttccgggagttcggcgaccgtgtcaagttctgggccaccttcaacgagcc 18722183
>ref|XM_507288.1| PREDICTED Oryza sativa (japonica cultivar-group), B1168A08.29-2 mRNA Length = 2148 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Plus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 629 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 688 Query: 271 acgagcc 277 ||||||| Sbjct: 689 acgagcc 695
>ref|XM_483282.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2148 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Plus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 629 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 688 Query: 271 acgagcc 277 ||||||| Sbjct: 689 acgagcc 695
>ref|XM_483281.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2045 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Plus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 682 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 741 Query: 271 acgagcc 277 ||||||| Sbjct: 742 acgagcc 748
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 46.1 bits (23), Expect = 0.091 Identities = 29/31 (93%) Strand = Plus / Plus Query: 216 gcggacgtgtgcttcaaggcgttcggcgacc 246 |||||||||||||||| || ||||||||||| Sbjct: 3868 gcggacgtgtgcttcagggagttcggcgacc 3898
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Minus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 25245390 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 25245331 Query: 271 acgagcc 277 ||||||| Sbjct: 25245330 acgagcc 25245324 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 ctgcaccacttcgatctgccgcac 152 ||||||||||||||||||| |||| Sbjct: 21124776 ctgcaccacttcgatctgcagcac 21124799
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Minus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 110513 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 110454 Query: 271 acgagcc 277 ||||||| Sbjct: 110453 acgagcc 110447
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Minus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 20575 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 20516 Query: 271 acgagcc 277 ||||||| Sbjct: 20515 acgagcc 20509
>dbj|AK120430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095M12, full insert sequence Length = 2148 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Plus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 629 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 688 Query: 271 acgagcc 277 ||||||| Sbjct: 689 acgagcc 695
>dbj|AK067231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O12, full insert sequence Length = 2148 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Plus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 629 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 688 Query: 271 acgagcc 277 ||||||| Sbjct: 689 acgagcc 695
>dbj|AK067001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092F09, full insert sequence Length = 2045 Score = 46.1 bits (23), Expect = 0.091 Identities = 56/67 (83%) Strand = Plus / Plus Query: 211 actacgcggacgtgtgcttcaaggcgttcggcgaccgggtcaagttctggacgacgctca 270 |||| ||||||||||||||| | ||||||||||||||| |||| |||| ||| ||| Sbjct: 682 actatgcggacgtgtgcttccgtgagttcggcgaccgggtgaagtcatggaacacgttca 741 Query: 271 acgagcc 277 ||||||| Sbjct: 742 acgagcc 748
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 caaccggctgatcgccgcgctc 98 |||||||||||||||||||||| Sbjct: 3647628 caaccggctgatcgccgcgctc 3647649
>ref|XM_315750.2| Anopheles gambiae str. PEST ENSANGP00000018633 (ENSANGG00000016144), partial mRNA Length = 1248 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 291 aagtttgcctacatgctgggcc 312 |||||||||||||||||||||| Sbjct: 799 aagtttgcctacatgctgggcc 820
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 322 ccaagcactgctccccgccgttcgggacc 350 |||||||||||||| |||| ||||||||| Sbjct: 182029 ccaagcactgctccacgcccttcgggacc 182001
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 gcggacgtgtgcttcaaggcg 236 ||||||||||||||||||||| Sbjct: 1253418 gcggacgtgtgcttcaaggcg 1253438
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 caaccggctgatcgccgcgct 97 ||||||||||||||||||||| Sbjct: 157093 caaccggctgatcgccgcgct 157073
>ref|XM_482566.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctgcaccacttcgatctgccgcac 152 ||||||||||||||||||| |||| Sbjct: 430 ctgcaccacttcgatctgcagcac 407
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gctactacgcggacgtgtgc 227 |||||||||||||||||||| Sbjct: 2127094 gctactacgcggacgtgtgc 2127113
>gb|DQ481666.1| Takifugu rubripes HoxBb gene cluster, complete sequence Length = 130146 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 cggcggttggctgggcgccg 189 |||||||||||||||||||| Sbjct: 72700 cggcggttggctgggcgccg 72681
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 gctactacgcggacgtgtgc 227 |||||||||||||||||||| Sbjct: 288759 gctactacgcggacgtgtgc 288778
>gb|AY196214.1| Streptomyces griseochromogenes blasticidin biosynthetic cluster, partial sequence Length = 36677 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gctggagacccggcacggcg 174 |||||||||||||||||||| Sbjct: 18182 gctggagacccggcacggcg 18163
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gctactacgcggacgtgtgc 227 |||||||||||||||||||| Sbjct: 2035626 gctactacgcggacgtgtgc 2035607
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 ctgcaccacttcgatctgccgcac 152 ||||||||||||||||||| |||| Sbjct: 95986 ctgcaccacttcgatctgcagcac 96009
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ttcaaggcgttcggcgaccg 247 |||||||||||||||||||| Sbjct: 2220263 ttcaaggcgttcggcgaccg 2220282 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,769,084 Number of Sequences: 3902068 Number of extensions: 1769084 Number of successful extensions: 30149 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29638 Number of HSP's gapped (non-prelim): 509 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
