ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13p22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full... 999 0.0
2dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clon... 432 e-118
3gb|AY111650.1| Zea mays CL15598_1 mRNA sequence 343 4e-91
4gb|AY105792.1| Zea mays PCO111792 mRNA sequence 133 7e-28
5dbj|AK120022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
6dbj|AK060514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
7gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 90 9e-15
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
9ref|NM_106743.2| Arabidopsis thaliana acyltransferase AT1G80950 ... 62 2e-06
10gb|AY128312.1| Arabidopsis thaliana unknown protein (At1g80950) ... 62 2e-06
11emb|BX815097.1|CNS0AAV9 Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
12gb|BT003346.1| Arabidopsis thaliana unknown protein (At1g80950) ... 62 2e-06
13gb|AY084489.1| Arabidopsis thaliana clone 109415 mRNA, complete ... 62 2e-06
14gb|AC011713.2|F23A5 Arabidopsis thaliana chromosome 1 BAC F23A5 ... 60 8e-06
15ref|XM_742190.1| Aspergillus fumigatus Af293 acetoacetyl-CoA syn... 46 0.12
16ref|XM_420029.1| PREDICTED: Gallus gallus frizzled-3 (FZ-3), mRNA 42 1.9
17gb|AC058788.89| Mus musculus strain C57BL/6J clone rp23-284a9 ma... 42 1.9
18emb|BX932219.1| Gallus gallus finished cDNA, clone ChEST360a14 42 1.9
19emb|BX932094.1| Gallus gallus finished cDNA, clone ChEST158f3 42 1.9
20dbj|AB114903.1| Mus musculus Lmbr1 gene for LMBR1L, partial cds 42 1.9
21dbj|AB093003.1| Rattus norvegicus DNA, cis-acting regulator of S... 42 1.9
22dbj|AB092986.1| Mus musculus DNA, cis-acting regulator of Sonic ... 42 1.9
23gb|AC171500.2| Mus musculus BAC clone RP24-67A10 from chromosome... 42 1.9
24gb|AC150524.3| Bos taurus BAC CH240-89P8 (Children's Hospital O... 40 7.6
25gb|AC146204.3| Pan troglodytes BAC clone RP43-25M3 from 7, compl... 40 7.6
26gb|AC009979.18| Homo sapiens 12 BAC RP11-324M3 (Roswell Park Can... 40 7.6
27gb|AC018655.5| Homo sapiens 12q BAC RP11-946G22 (Roswell Park Ca... 40 7.6
28gb|AC010768.10| Homo sapiens chromosome 11, clone RP11-58K22, co... 40 7.6
29gb|AC147774.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 7.6
30dbj|AB189013.1| Turnip mosaic virus gene for polyprotein, partia... 40 7.6
31dbj|AB189012.1| Turnip mosaic virus gene for polyprotein, partia... 40 7.6
32dbj|AB189011.1| Turnip mosaic virus gene for polyprotein, partia... 40 7.6
33dbj|AB189010.1| Turnip mosaic virus gene for polyprotein, partia... 40 7.6
34gb|AC007029.3|AC007029 Homo sapiens clone RP5-855F16, complete s... 40 7.6
35gb|AF434723.1| Turnip mosaic virus isolate ITA 6 coat protein ge... 40 7.6
36dbj|AB023066.1| Rattus norvegicus Apex psudogene (Apexp1) insert... 40 7.6 
>gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full insert mRNA
           sequence
          Length = 1042

 Score =  999 bits (504), Expect = 0.0
 Identities = 534/544 (98%)
 Strand = Plus / Plus

                                                                       
Query: 13  gcgtgttgtcgcgggcgatgctcttcgtgttcgggttctactggatccccgtgtccgatc 72
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 45  gcgtgttgtcgcgggcaatgctgttcgtgttcgggttctactggatccccgtgtccgatc 104

                                                                       
Query: 73  gaagcttccccaatgccgaggatgtacctaaagatcactctgaagaactggaaagaccag 132
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 105 gaagcttccccaatgccgaggatgtacctaaagatcactatgaagaactggaaagaccag 164

                                                                       
Query: 133 gggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatgtcagcttctt 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatgtcagcttctt 224

                                                                       
Query: 193 ctccgagttttgttgctaagaactcagtgtcgaagttgccgttgattggtctcataagca 252
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 225 ctccgagttttgttgctaagaactcagtgtccaagttgccgttgattggtctcataagca 284

                                                                       
Query: 253 aatgtcttgggtgtatttttgttcaacgagaatccagatgttcagattctaaaggtgtct 312
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 285 aatgtcttgggtgcatttttgttcaacgagaatccaaatgttcagattctaaaggtgtct 344

                                                                       
Query: 313 caggtgctgtaactgaaaggctccatgaggtttctcaagacgagaattcctctatgatgt 372
           |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 345 caggtgctgtaactgaaaggctccatgaggtttcacaagacgagaattcccctatgatct 404

                                                                       
Query: 373 tactctttcctgagggtactactacgaatggggattaccttctcccatttaagacaggag 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tactctttcctgagggtactactacgaatggggattaccttctcccatttaagacaggag 464

                                                                       
Query: 433 cctttcttgcaagggcaccattgcaacctgtaattttgagatatccttacaggagattta 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cctttcttgcaagggcaccattgcaacctgtaattttgagatatccttacaggagattta 524

                                                                       
Query: 493 gtccagcctgggactccatggatggggcacgtcatgtgtttttgctcctctgtcagtttg 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 525 gtccagcctgggactccatggatggggcacgtcatgtgtttttgctcctctgtcaatttg 584

               
Query: 553 caaa 556
           ||||
Sbjct: 585 caaa 588
to top
>dbj|AK102755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A02, full
            insert sequence
          Length = 2522

 Score =  432 bits (218), Expect = e-118
 Identities = 401/462 (86%)
 Strand = Plus / Plus

                                                                        
Query: 91   aggatgtacctaaagatcactctgaagaactggaaagaccaggggcgattgtatctaatc 150
            ||||||||| | ||| ||| ||||||||| |||||  ||||||||| ||||| |||||||
Sbjct: 1655 aggatgtacatcaaggtcaatctgaagaattggaattaccaggggcaattgtgtctaatc 1714

                                                                        
Query: 151  atgtgtcatatgtggacattctttatcatatgtcagcttcttctccgagttttgttgcta 210
            | ||||| ||||| || ||||||||||| ||||||| ||||| ||| || |||||||| |
Sbjct: 1715 acgtgtcttatgtagatattctttatcacatgtcagtttcttttccaagctttgttgcaa 1774

                                                                        
Query: 211  agaactcagtgtcgaagttgccgttgattggtctcataagcaaatgtcttgggtgtattt 270
            || | |||||||| | ||||||  |  ||||||||||||||||||||||||| || ||||
Sbjct: 1775 aggagtcagtgtccaggttgcccctagttggtctcataagcaaatgtcttggatgcattt 1834

                                                                        
Query: 271  ttgttcaacgagaatccagatgttcagattctaaaggtgtctcaggtgctgtaactgaaa 330
            | ||||||||||| |||| |  ||||||||||||||||||||||||||||||||||||||
Sbjct: 1835 tcgttcaacgagagtccaaagcttcagattctaaaggtgtctcaggtgctgtaactgaaa 1894

                                                                        
Query: 331  ggctccatgaggtttctcaagacgagaattcctctatgatgttactctttcctgagggta 390
            || |||| |||| || ||||||  |||||||||| |||||||| || |||||||||||||
Sbjct: 1895 gggtccaagaggcttatcaagataagaattcctcaatgatgttgctatttcctgagggta 1954

                                                                        
Query: 391  ctactacgaatggggattaccttctcccatttaagacaggagcctttcttgcaagggcac 450
            |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |  |
Sbjct: 1955 ctactacggatggggattaccttctgccatttaggacaggagcctttcttgcaagagttc 2014

                                                                        
Query: 451  cattgcaacctgtaattttgagatatccttacaggagatttagtccagcctgggactcca 510
            || | || || || |||||||||||||| |||| ||  ||||||||||||||||||||||
Sbjct: 2015 cagttcagccagtcattttgagatatccgtacacgatgtttagtccagcctgggactcca 2074

                                                      
Query: 511  tggatggggcacgtcatgtgtttttgctcctctgtcagtttg 552
            ||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 2075 tggatggggcacgccatgtctttttgctcctctgtcaatttg 2116



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                       
Query: 21  tcgcgggcgatgctcttcgtgttcgggttctactggatccccgtgtccgatcgaagcttc 80
           |||||||| ||||||||||| ||||||||||||||||||| || | || | || |||| |
Sbjct: 512 tcgcgggcaatgctcttcgtcttcgggttctactggatccgcgagacccaccggagctac 571

                        
Query: 81  cccaatgccgagg 93
           |||||||| ||||
Sbjct: 572 cccaatgctgagg 584
to top
>gb|AY111650.1| Zea mays CL15598_1 mRNA sequence
          Length = 920

 Score =  343 bits (173), Expect = 4e-91
 Identities = 360/424 (84%)
 Strand = Plus / Minus

                                                                       
Query: 124 aaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatgt 183
           |||| |||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||
Sbjct: 825 aaaggccaggggcaattgtatctaatcatgtctcttatgtggatattctttatcacatgt 766

                                                                       
Query: 184 cagcttcttctccgagttttgttgctaagaactcagtgtcgaagttgccgttgattggtc 243
           |||| || | ||| ||||||||||||||| | |||||||| | ||||||  | |||||||
Sbjct: 765 cagcatcctttccaagttttgttgctaaggagtcagtgtccaggttgccacttattggtc 706

                                                                       
Query: 244 tcataagcaaatgtcttgggtgtatttttgttcaacgagaatccagatgttcagattcta 303
           |||||||||| |||||||| || |     |||||||||||||| |  | || |||  |||
Sbjct: 705 tcataagcaattgtcttggatgcannnnngttcaacgagaatcaaagtctttagaagcta 646

                                                                       
Query: 304 aaggtgtctcaggtgctgtaactgaaaggctccatgaggtttctcaagacgagaattcct 363
           ||||||||||||| |||||| |||||||| |||| ||||||| ||||||  ||||| || 
Sbjct: 645 aaggtgtctcaggcgctgtagctgaaaggatccaagaggtttgtcaagataagaataccc 586

                                                                       
Query: 364 ctatgatgttactctttcctgagggtactactacgaatggggattaccttctcccattta 423
           | ||||||||  | ||||| ||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 585 caatgatgttgttgtttcccgagggaactactacaaatggggattaccttcttccattta 526

                                                                       
Query: 424 agacaggagcctttcttgcaagggcaccattgcaacctgtaattttgagatatccttaca 483
           |||| ||||||||||||||| | |||||| |||| || || ||||||| ||| |||||||
Sbjct: 525 agactggagcctttcttgcaggtgcaccagtgcagccagtcattttgaaatacccttaca 466

                                                                       
Query: 484 ggagatttagtccagcctgggactccatggatggggcacgtcatgtgtttttgctcctct 543
           |||||||||||||||| ||||| || |||||||| |||||||||||||| ||||| ||||
Sbjct: 465 ggagatttagtccagcatgggattcaatggatggagcacgtcatgtgttattgctgctct 406

               
Query: 544 gtca 547
           ||||
Sbjct: 405 gtca 402



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 29  gatgctcttcgtgttcgggttctactggatcc 60
           |||||||||||| |||||||||||||||||||
Sbjct: 920 gatgctcttcgtcttcgggttctactggatcc 889
to top
>gb|AY105792.1| Zea mays PCO111792 mRNA sequence
          Length = 1502

 Score =  133 bits (67), Expect = 7e-28
 Identities = 157/187 (83%)
 Strand = Plus / Plus

                                                                        
Query: 366  atgatgttactctttcctgagggtactactacgaatggggattaccttctcccatttaag 425
            |||||| ||||||| |||||||| || ||||| ||||||||||| || || ||||| || 
Sbjct: 863  atgatgctactcttccctgagggcacaactacaaatggggattatctccttccattcaaa 922

                                                                        
Query: 426  acaggagcctttcttgcaagggcaccattgcaacctgtaattttgagatatccttacagg 485
            ||||| || |||||||||| ||||||| | ||||| || |||||||||||||||||||  
Sbjct: 923  acaggtgcttttcttgcaaaggcaccagttcaaccagtcattttgagatatccttacaaa 982

                                                                        
Query: 486  agatttagtccagcctgggactccatggatggggcacgtcatgtgtttttgctcctctgt 545
            ||||||| | |||| ||||| ||||||   |||||||||||||| ||| |||| ||||||
Sbjct: 983  agatttaatgcagcatgggattccatgtcaggggcacgtcatgtatttctgctgctctgt 1042

                   
Query: 546  cagtttg 552
            || ||||
Sbjct: 1043 caatttg 1049



 Score =  129 bits (65), Expect = 1e-26
 Identities = 173/209 (82%)
 Strand = Plus / Plus

                                                                       
Query: 123 gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatg 182
           ||||| || ||||| ||||| ||||||||||| || |||||||| ||||||||||| |||
Sbjct: 620 gaaaggcctggggcaattgtgtctaatcatgtatcttatgtggatattctttatcacatg 679

                                                                       
Query: 183 tcagcttcttctccgagttttgttgctaagaactcagtgtcgaagttgccgttgattggt 242
           ||||| |||| ||| ||||||||||||||||  |||||| | |  |||||  |  |||||
Sbjct: 680 tcagcctcttttcctagttttgttgctaagagatcagtggctagattgcctctagttggt 739

                                                                       
Query: 243 ctcataagcaaatgtcttgggtgtatttttgttcaacgagaatccagatgttcagattct 302
           |||||||||||||||||||| || ||||||||||| || || || | |    ||||||  
Sbjct: 740 ctcataagcaaatgtcttggatgcatttttgttcagcgggagtcgaaaacaccagatttc 799

                                        
Query: 303 aaaggtgtctcaggtgctgtaactgaaag 331
           |||||||| |||||||||||| |||||||
Sbjct: 800 aaaggtgtttcaggtgctgtatctgaaag 828
to top
>dbj|AK120022.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C04, full
            insert sequence
          Length = 1727

 Score =  125 bits (63), Expect = 2e-25
 Identities = 252/315 (80%)
 Strand = Plus / Plus

                                                                        
Query: 238  ttggtctcataagcaaatgtcttgggtgtatttttgttcaacgagaatccagatgttcag 297
            ||||||||||||||||||||||||| || ||||||||||| || | ||| | |   ||||
Sbjct: 899  ttggtctcataagcaaatgtcttggatgcatttttgttcagcggggatctaaaacctcag 958

                                                                        
Query: 298  attctaaaggtgtctcaggtgctgtaactgaaaggctccatgaggtttctcaagacgaga 357
            |||  ||||| || ||||||||||| ||||| ||  ||||   || |  |||| |  |||
Sbjct: 959  atttcaaaggcgtttcaggtgctgtgactgagagaatccaacgggctcatcaacagaaga 1018

                                                                        
Query: 358  attcctctatgatgttactctttcctgagggtactactacgaatggggattaccttctcc 417
            ||||  | |||||| |||| || ||||| || || ||||| ||||| ||||| || ||||
Sbjct: 1019 attctccaatgatgctacttttccctgaaggcacaactacaaatggtgattatctcctcc 1078

                                                                        
Query: 418  catttaagacaggagcctttcttgcaagggcaccattgcaacctgtaattttgagatatc 477
            | || ||||||||||| ||||||||||  |||||| || | || || ||||| |||||||
Sbjct: 1079 ctttcaagacaggagcatttcttgcaaaagcaccagtgaagccagtcattttaagatatc 1138

                                                                        
Query: 478  cttacaggagatttagtccagcctgggactccatggatggggcacgtcatgtgtttttgc 537
            |||||| ||||||||||||||| ||||| || |||  |||||| || ||||| ||| |||
Sbjct: 1139 cttacaagagatttagtccagcatgggattcgatgtctggggctcggcatgtatttctgc 1198

                           
Query: 538  tcctctgtcagtttg 552
            |||| ||||| ||||
Sbjct: 1199 tcctttgtcaatttg 1213
to top
>dbj|AK060514.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F05, full
            insert sequence
          Length = 1500

 Score =  109 bits (55), Expect = 1e-20
 Identities = 154/187 (82%)
 Strand = Plus / Plus

                                                                        
Query: 366  atgatgttactctttcctgagggtactactacgaatggggattaccttctcccatttaag 425
            |||||| |||| || ||||| || || ||||| ||||| ||||| || ||||| || |||
Sbjct: 864  atgatgctacttttccctgaaggcacaactacaaatggtgattatctcctccctttcaag 923

                                                                        
Query: 426  acaggagcctttcttgcaagggcaccattgcaacctgtaattttgagatatccttacagg 485
            |||||||| ||||||||||  |||||| || | || || ||||| ||||||||||||| |
Sbjct: 924  acaggagcatttcttgcaaaagcaccagtgaagccagtcattttaagatatccttacaag 983

                                                                        
Query: 486  agatttagtccagcctgggactccatggatggggcacgtcatgtgtttttgctcctctgt 545
            |||||||||||||| ||||| || |||  |||||| || ||||| ||| ||||||| |||
Sbjct: 984  agatttagtccagcatgggattcgatgtctggggctcggcatgtatttctgctcctttgt 1043

                   
Query: 546  cagtttg 552
            || ||||
Sbjct: 1044 caatttg 1050



 Score =  107 bits (54), Expect = 4e-20
 Identities = 174/214 (81%)
 Strand = Plus / Plus

                                                                       
Query: 115 aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 174
           ||||| ||| ||||||||||||  | |||||||||||||| || |||||||| |||||||
Sbjct: 613 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 672

                                                                       
Query: 175 atcatatgtcagcttcttctccgagttttgttgctaagaactcagtgtcgaagttgccgt 234
           | || |||||| |||| |  || || |||||||| ||||  |||||| | |  |||||  
Sbjct: 673 accacatgtcatcttccttcccaagctttgttgccaagagatcagtggccagattgccca 732

                                                                       
Query: 235 tgattggtctcataagcaaatgtcttgggtgtatttttgttcaacgagaatccagatgtt 294
           || ||||||||||||||||||||||||| || ||||||||||| || ||||| | |   |
Sbjct: 733 tggttggtctcataagcaaatgtcttggatgcatttttgttcagcgggaatctaaaacct 792

                                             
Query: 295 cagattctaaaggtgtctcaggtgctgtaactga 328
           ||||||  ||||| || ||||||||||| |||||
Sbjct: 793 cagatttcaaaggcgtttcaggtgctgtgactga 826
to top
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
             complete sequence
          Length = 143130

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                         
Query: 393   actacgaatggggattaccttctcccatttaagacaggagcctttcttgcaagggcacca 452
             ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||  ||||||
Sbjct: 56003 actacaaatggtgattatctcctccctttcaagacaggagcatttcttgcaaaagcacca 55944

                                                                  
Query: 453   ttgcaacctgtaattttgagatatccttacaggagatttagtccagcctggga 505
              || | || || ||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 55943 gtgaagccagtcattttaagatatccttacaagagatttagtccagcatggga 55891



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                         
Query: 115   aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 174
             ||||| ||| ||||||||||||  | |||||||||||||| || |||||||| |||||||
Sbjct: 57622 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 57563

                             
Query: 175   atcatatgtcagcttc 190
             | || |||||| ||||
Sbjct: 57562 accacatgtcatcttc 57547



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 249   agcaaatgtcttgggtgtatttttgttcaacgagaatc 286
             |||||||||||||| || ||||||||||| || |||||
Sbjct: 56999 agcaaatgtcttggatgcatttttgttcagcgggaatc 56962
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                            
Query: 393      actacgaatggggattaccttctcccatttaagacaggagcctttcttgcaagggcacca 452
                ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||  ||||||
Sbjct: 16843507 actacaaatggtgattatctcctccctttcaagacaggagcatttcttgcaaaagcacca 16843448

                                                                     
Query: 453      ttgcaacctgtaattttgagatatccttacaggagatttagtccagcctggga 505
                 || | || || ||||| ||||||||||||| ||||||||||||||| |||||
Sbjct: 16843447 gtgaagccagtcattttaagatatccttacaagagatttagtccagcatggga 16843395



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                            
Query: 115      aagaactggaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattcttt 174
                ||||| ||| ||||||||||||  | |||||||||||||| || |||||||| |||||||
Sbjct: 16845126 aagaattgggaagaccaggggcagtagtatctaatcatgtatcttatgtggatattcttt 16845067

                                
Query: 175      atcatatgtcagcttc 190
                | || |||||| ||||
Sbjct: 16845066 accacatgtcatcttc 16845051



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 249      agcaaatgtcttgggtgtatttttgttcaacgagaatc 286
                |||||||||||||| || ||||||||||| || |||||
Sbjct: 16844503 agcaaatgtcttggatgcatttttgttcagcgggaatc 16844466
to top
>ref|NM_106743.2| Arabidopsis thaliana acyltransferase AT1G80950 mRNA, complete cds
          Length = 1484

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 123 gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatg 182
           |||||||| || || ||||| || |||||||| || ||  |||||||| | |||||||||
Sbjct: 731 gaaagacctggagccattgtgtccaatcatgtttcgtacttggacattttgtatcatatg 790

                                          
Query: 183 tcagcttcttctccgagttttgttgctaaga 213
           || ||||||| ||| ||||||||||| ||||
Sbjct: 791 tctgcttcttttccaagttttgttgccaaga 821
to top
>gb|AY128312.1| Arabidopsis thaliana unknown protein (At1g80950) mRNA, complete cds
          Length = 1394

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 123 gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatg 182
           |||||||| || || ||||| || |||||||| || ||  |||||||| | |||||||||
Sbjct: 641 gaaagacctggagccattgtgtccaatcatgtttcgtacttggacattttgtatcatatg 700

                                          
Query: 183 tcagcttcttctccgagttttgttgctaaga 213
           || ||||||| ||| ||||||||||| ||||
Sbjct: 701 tctgcttcttttccaagttttgttgccaaga 731
to top
>emb|BX815097.1|CNS0AAV9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS32ZB01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1404

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 123 gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatg 182
           |||||||| || || ||||| || |||||||| || ||  |||||||| | |||||||||
Sbjct: 684 gaaagacctggagccattgtgtccaatcatgtttcgtacttggacattttgtatcatatg 743

                                          
Query: 183 tcagcttcttctccgagttttgttgctaaga 213
           || ||||||| ||| ||||||||||| ||||
Sbjct: 744 tctgcttcttttccaagttttgttgccaaga 774
to top
>gb|BT003346.1| Arabidopsis thaliana unknown protein (At1g80950) mRNA, complete cds
          Length = 1260

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 123 gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatg 182
           |||||||| || || ||||| || |||||||| || ||  |||||||| | |||||||||
Sbjct: 553 gaaagacctggagccattgtgtccaatcatgtttcgtacttggacattttgtatcatatg 612

                                          
Query: 183 tcagcttcttctccgagttttgttgctaaga 213
           || ||||||| ||| ||||||||||| ||||
Sbjct: 613 tctgcttcttttccaagttttgttgccaaga 643
to top
>gb|AY084489.1| Arabidopsis thaliana clone 109415 mRNA, complete sequence
          Length = 1483

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 123 gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatg 182
           |||||||| || || ||||| || |||||||| || ||  |||||||| | |||||||||
Sbjct: 732 gaaagacctggagccattgtgtccaatcatgtttcgtacttggacattttgtatcatatg 791

                                          
Query: 183 tcagcttcttctccgagttttgttgctaaga 213
           || ||||||| ||| ||||||||||| ||||
Sbjct: 792 tctgcttcttttccaagttttgttgccaaga 822
to top
>gb|AC011713.2|F23A5 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence
          Length = 109694

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                         
Query: 123   gaaagaccaggggcgattgtatctaatcatgtgtcatatgtggacattctttatcatatg 182
             |||||||| || || ||||| || |||||||| || ||  |||||||| | |||||||||
Sbjct: 98029 gaaagacctggagccattgtgtccaatcatgtttcgtacttggacattttgtatcatatg 97970

                                       
Query: 183   tcagcttcttctccgagttttgttgc 208
             || ||||||| ||| |||||||||||
Sbjct: 97969 tctgcttcttttccaagttttgttgc 97944
to top
>ref|XM_742190.1| Aspergillus fumigatus Af293 acetoacetyl-CoA synthase (Afu8g04770)
           partial mRNA
          Length = 2103

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 431 agcctttcttgcaagggcaccattgca 457
           ||||||||||||||||||||| |||||
Sbjct: 813 agcctttcttgcaagggcacccttgca 839
to top
>ref|XM_420029.1| PREDICTED: Gallus gallus frizzled-3 (FZ-3), mRNA
          Length = 2624

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 371 gttactctttcctgagggtac 391
           |||||||||||||||||||||
Sbjct: 895 gttactctttcctgagggtac 915
to top
>gb|AC058788.89| Mus musculus strain C57BL/6J clone rp23-284a9 map 5, complete sequence
          Length = 200015

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 492    agtccagcctgggactccatg 512
              |||||||||||||||||||||
Sbjct: 174682 agtccagcctgggactccatg 174702
to top
>emb|BX932219.1| Gallus gallus finished cDNA, clone ChEST360a14
          Length = 935

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 371 gttactctttcctgagggtac 391
           |||||||||||||||||||||
Sbjct: 735 gttactctttcctgagggtac 755
to top
>emb|BX932094.1| Gallus gallus finished cDNA, clone ChEST158f3
          Length = 1401

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 371 gttactctttcctgagggtac 391
           |||||||||||||||||||||
Sbjct: 863 gttactctttcctgagggtac 883
to top
>dbj|AB114903.1| Mus musculus Lmbr1 gene for LMBR1L, partial cds
          Length = 104485

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 492   agtccagcctgggactccatg 512
             |||||||||||||||||||||
Sbjct: 98346 agtccagcctgggactccatg 98366
to top
>dbj|AB093003.1| Rattus norvegicus DNA, cis-acting regulator of Sonic hedgehog (Shh)
          Length = 506

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 492 agtccagcctgggactccatg 512
           |||||||||||||||||||||
Sbjct: 392 agtccagcctgggactccatg 412
to top
>dbj|AB092986.1| Mus musculus DNA, cis-acting regulator of Sonic hedgehog (Shh)
          Length = 541

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 492 agtccagcctgggactccatg 512
           |||||||||||||||||||||
Sbjct: 419 agtccagcctgggactccatg 439
to top
>gb|AC171500.2| Mus musculus BAC clone RP24-67A10 from chromosome 5, complete sequence
          Length = 185497

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 492   agtccagcctgggactccatg 512
             |||||||||||||||||||||
Sbjct: 37834 agtccagcctgggactccatg 37814
to top
>gb|AC150524.3| Bos taurus  BAC CH240-89P8 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 189720

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ttttgttgctaagaactcag 219
             ||||||||||||||||||||
Sbjct: 69465 ttttgttgctaagaactcag 69446
to top
>gb|AC146204.3| Pan troglodytes BAC clone RP43-25M3 from 7, complete sequence
          Length = 188265

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   atgtgtttttgctcctctgt 545
             ||||||||||||||||||||
Sbjct: 90487 atgtgtttttgctcctctgt 90506
to top
>gb|AC009979.18| Homo sapiens 12 BAC RP11-324M3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 69085

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 532  ttttgctcctctgtcagttt 551
            ||||||||||||||||||||
Sbjct: 1964 ttttgctcctctgtcagttt 1945
to top
>gb|AC018655.5| Homo sapiens 12q BAC RP11-946G22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 16886

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 532   ttttgctcctctgtcagttt 551
             ||||||||||||||||||||
Sbjct: 16851 ttttgctcctctgtcagttt 16832
to top
>gb|AC010768.10| Homo sapiens chromosome 11, clone RP11-58K22, complete sequence
          Length = 192391

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 531    tttttgctcctctgtcagtt 550
              ||||||||||||||||||||
Sbjct: 141402 tttttgctcctctgtcagtt 141421
to top
>gb|AC147774.3| Medicago truncatula chromosome 2 BAC clone mth2-10c8, complete sequence
          Length = 110758

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   caacctgtaattttgagata 475
             ||||||||||||||||||||
Sbjct: 71236 caacctgtaattttgagata 71217
to top
>dbj|AB189013.1| Turnip mosaic virus gene for polyprotein, partial cds, isolate:
           ITA6
          Length = 864

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 529 tgtttttgctcctctgtcag 548
           ||||||||||||||||||||
Sbjct: 44  tgtttttgctcctctgtcag 25
to top
>dbj|AB189012.1| Turnip mosaic virus gene for polyprotein, partial cds, isolate:
           ITA5
          Length = 864

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 529 tgtttttgctcctctgtcag 548
           ||||||||||||||||||||
Sbjct: 44  tgtttttgctcctctgtcag 25
to top
>dbj|AB189011.1| Turnip mosaic virus gene for polyprotein, partial cds, isolate:
           ITA4
          Length = 864

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 529 tgtttttgctcctctgtcag 548
           ||||||||||||||||||||
Sbjct: 44  tgtttttgctcctctgtcag 25
to top
>dbj|AB189010.1| Turnip mosaic virus gene for polyprotein, partial cds, isolate:
           ITA3
          Length = 864

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 529 tgtttttgctcctctgtcag 548
           ||||||||||||||||||||
Sbjct: 44  tgtttttgctcctctgtcag 25
to top
>gb|AC007029.3|AC007029 Homo sapiens clone RP5-855F16, complete sequence
          Length = 95345

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   atgtgtttttgctcctctgt 545
             ||||||||||||||||||||
Sbjct: 46005 atgtgtttttgctcctctgt 46024
to top
>gb|AF434723.1| Turnip mosaic virus isolate ITA 6 coat protein gene, partial cds
          Length = 867

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 529 tgtttttgctcctctgtcag 548
           ||||||||||||||||||||
Sbjct: 44  tgtttttgctcctctgtcag 25
to top
>dbj|AB023066.1| Rattus norvegicus Apex psudogene (Apexp1) inserted into the LINE
            sequence
          Length = 8236

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  tcttgggtgtatttttgttc 276
            ||||||||||||||||||||
Sbjct: 5351 tcttgggtgtatttttgttc 5370


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,430,250
Number of Sequences: 3902068
Number of extensions: 5430250
Number of successful extensions: 81942
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81860
Number of HSP's gapped (non-prelim): 77
length of query: 559
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 536
effective length of database: 17,143,297,704
effective search space: 9188807569344
effective search space used: 9188807569344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top