>PSD3_DAUCA (Q06364) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Nuclear antigen 21D7)
          Length = 489

 Score =  329 bits (844), Expect = 3e-90
 Identities = 162/181 (89%), Positives = 173/181 (95%)
 Frame = +3

Query: 3   RKAPAAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLEL 182
           RKAP AA GFR+QCNKWA+IVRLLLGEIPERTVFMQKGM++AL PYF LTNAVRIGDLEL
Sbjct: 269 RKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFXLTNAVRIGDLEL 328

Query: 183 FRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPV 362
           FR VADKFASTF+ADRTHNLIVRLRHNVIRTGLRNISISYSRISL D+A+KLRLD+ NPV
Sbjct: 329 FRXVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPV 388

Query: 363 ADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAV 542
           ADAE IV+KAIRDGAIDATIDHANGWMVSKETGD+YSTNEPQAAFNSRIAFCLNMHNEAV
Sbjct: 389 ADAESIVSKAIRDGAIDATIDHANGWMVSKETGDIYSTNEPQAAFNSRIAFCLNMHNEAV 448

Query: 543 K 545
           +
Sbjct: 449 R 449

>PSD3_TOBAC (P93768) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Nuclear antigen 21D7)
          Length = 488

 Score =  322 bits (824), Expect = 6e-88
 Identities = 159/181 (87%), Positives = 172/181 (95%)
 Frame = +3

Query: 3   RKAPAAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLEL 182
           RKAP AA GFR+QCNKWAIIVRLLLGEIPERTVFMQKGM++AL PYFELTNAVRIGDLEL
Sbjct: 268 RKAPQAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLEL 327

Query: 183 FRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPV 362
           FR VA+KF+STFS+D T+NLIVRLRHNVIRTGLRNISISYSRISL D+AKKLRLD+ NPV
Sbjct: 328 FRKVAEKFSSTFSSDGTNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSPNPV 387

Query: 363 ADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAV 542
           ADAE IV+KAIRDGAIDAT+DHANGWMVSKETGD+YSTNEPQ AFNSRIAFCLNMHNEAV
Sbjct: 388 ADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAV 447

Query: 543 K 545
           +
Sbjct: 448 R 448

>PSD31_ARATH (Q9LNU4) Probable 26S proteasome non-ATPase regulatory subunit 3a|
           (26S proteasome subunit S3-a)
          Length = 488

 Score =  310 bits (793), Expect = 2e-84
 Identities = 154/181 (85%), Positives = 166/181 (91%)
 Frame = +3

Query: 3   RKAPAAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLEL 182
           RKAP AA GFRIQCNKWAI+VRLLLGEIPER++F QKGM++AL PYFELTNAVRIGDLEL
Sbjct: 268 RKAPIAALGFRIQCNKWAILVRLLLGEIPERSIFTQKGMEKALRPYFELTNAVRIGDLEL 327

Query: 183 FRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPV 362
           FR V +KF  TF+ DRTHNLIVRLRHNVIRTGLRNISISYSRISL D+AKKLRL++ NPV
Sbjct: 328 FRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSENPV 387

Query: 363 ADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAV 542
           ADAE IVAKAIRDGAIDATIDH NG MVSKETGD+YSTNEPQ AFNSRIAFCLNMHNEAV
Sbjct: 388 ADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAV 447

Query: 543 K 545
           +
Sbjct: 448 R 448

>PSD32_ARATH (Q9LQR8) Probable 26S proteasome non-ATPase regulatory subunit 3b|
           (26S proteasome subunit S3-b)
          Length = 487

 Score =  306 bits (783), Expect = 3e-83
 Identities = 151/181 (83%), Positives = 165/181 (91%)
 Frame = +3

Query: 3   RKAPAAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLEL 182
           RKAP A+ GFRIQCNKWAIIVRLLLGEIPER++F QKGM++ L PYFELTNAVRIGDLEL
Sbjct: 267 RKAPVASLGFRIQCNKWAIIVRLLLGEIPERSIFTQKGMEKTLRPYFELTNAVRIGDLEL 326

Query: 183 FRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNPV 362
           F  + +KFA TF+ DRTHNLIVRLRHNVIRTGLRNISISYSRISL D+A+KLRL++ NPV
Sbjct: 327 FGKIQEKFAKTFAEDRTHNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPV 386

Query: 363 ADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEAV 542
           ADAE IVAKAIRDGAIDATIDH NG MVSKETGD+YSTNEPQ AFNSRIAFCLNMHNEAV
Sbjct: 387 ADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYSTNEPQTAFNSRIAFCLNMHNEAV 446

Query: 543 K 545
           +
Sbjct: 447 R 447

>PSD3_HUMAN (O43242) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit S3) (Proteasome subunit
           p58)
          Length = 534

 Score =  199 bits (506), Expect = 4e-51
 Identities = 107/182 (58%), Positives = 134/182 (73%), Gaps = 1/182 (0%)
 Frame = +3

Query: 3   RKAPA-AARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLE 179
           RKAP   A GF+   +K  I+V LLLGEIP+R  F Q  +K +L PYF LT AVR G+L 
Sbjct: 314 RKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLA 373

Query: 180 LFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNP 359
            F  V D+F   F AD T+ LI+RLRHNVI+TG+R IS+SYSRISLADIA+KL+LD+   
Sbjct: 374 KFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPE- 432

Query: 360 VADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEA 539
             DAE IVAKAIRDG I+A+I+H  G++ SKE  D+YST EPQ AF+ RI+FCL++HN +
Sbjct: 433 --DAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMS 490

Query: 540 VK 545
           VK
Sbjct: 491 VK 492

>PSD3_MOUSE (P14685) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit S3) (Proteasome subunit
           p58) (Transplantation antigen P91A) (Tum-P91A antigen)
          Length = 530

 Score =  197 bits (502), Expect = 1e-50
 Identities = 106/182 (58%), Positives = 133/182 (73%), Gaps = 1/182 (0%)
 Frame = +3

Query: 3   RKAPA-AARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLE 179
           RKAP   A GF+   +K  I+V LLLGEIP+R  F Q  +K +L PYF LT AVR G+L 
Sbjct: 310 RKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLA 369

Query: 180 LFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNP 359
            F  V D+F   F  D T+ LI+RLRHNVI+TG+R IS+SYSRISLADIA+KL+LD+   
Sbjct: 370 KFNQVLDQFGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPE- 428

Query: 360 VADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEA 539
             DAE IVAKAIRDG I+A+I+H  G++ SKE  D+YST EPQ AF+ RI+FCL++HN +
Sbjct: 429 --DAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMS 486

Query: 540 VK 545
           VK
Sbjct: 487 VK 488

>PSD3_ANOST (Q9U5Z8) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Diphenol oxidase A2
           component) (DOX-A2)
          Length = 500

 Score =  196 bits (498), Expect = 4e-50
 Identities = 103/182 (56%), Positives = 132/182 (72%), Gaps = 1/182 (0%)
 Frame = +3

Query: 3   RKAPA-AARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLE 179
           RKAP  AA GFR    K  I+V LLLG+IPER VF Q  ++ +L PYF+LT AVR+G+L+
Sbjct: 281 RKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQ 340

Query: 180 LFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNP 359
            F  V + F   F  D T  LI+RLRHNVI+T +R+I ++YSRIS  DIA+KL LD+   
Sbjct: 341 RFGEVLENFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPE- 399

Query: 360 VADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEA 539
             DAE IVAKAIRDG IDAT+D   G+M +KE+ D+YST EPQ AF+ RI+FCL++HN++
Sbjct: 400 --DAEFIVAKAIRDGVIDATLDPEKGYMRTKESTDIYSTREPQLAFHQRISFCLDLHNQS 457

Query: 540 VK 545
           VK
Sbjct: 458 VK 459

>PSD3_DROME (P25161) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Diphenol oxidase A2
           component) (DOX-A2)
          Length = 494

 Score =  194 bits (494), Expect = 1e-49
 Identities = 102/182 (56%), Positives = 132/182 (72%), Gaps = 1/182 (0%)
 Frame = +3

Query: 3   RKAPA-AARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLE 179
           RK+P  AA GFR    K  I+V LLLG IPER VF Q G++++L  YF+LT AVR+G+L+
Sbjct: 275 RKSPQHAAIGFRQTVQKLIIVVELLLGNIPERVVFRQAGLRQSLGAYFQLTQAVRLGNLK 334

Query: 180 LFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNP 359
            F  V  ++   F  D T  LI+RLRHNVI+T +R+I +SYSRIS  DIAK+L LD+   
Sbjct: 335 RFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDIAKRLMLDSAE- 393

Query: 360 VADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEA 539
             DAE IV+KAIRDG I+AT+D A  +M SKE+ D+YST EPQ AF+ RI+FCLN+HN++
Sbjct: 394 --DAEFIVSKAIRDGVIEATLDPAQNFMRSKESTDIYSTREPQLAFHERISFCLNLHNQS 451

Query: 540 VK 545
           VK
Sbjct: 452 VK 453

>PSD3_ANOGA (O61470) Probable 26S proteasome non-ATPase regulatory subunit 3|
           (26S proteasome subunit S3) (Diphenol oxidase A2
           component) (DOX-A2)
          Length = 496

 Score =  194 bits (492), Expect = 2e-49
 Identities = 103/182 (56%), Positives = 131/182 (71%), Gaps = 1/182 (0%)
 Frame = +3

Query: 3   RKAPA-AARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLE 179
           RKAP  AA GFR    K  I+V LLLG+IPER VF Q  ++ +L PYF+LT AVR+G+L+
Sbjct: 277 RKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQ 336

Query: 180 LFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNP 359
            F  V   F   F  D T  LI+RLRHNVI+T +R+I ++YSRIS  DIA+KL LD+   
Sbjct: 337 RFGEVLVNFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPE- 395

Query: 360 VADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNEA 539
             DAE IVAKAIRDG I+AT+D   G+M SKE+ D+YST EPQ AF+ RI+FCL++HN++
Sbjct: 396 --DAEFIVAKAIRDGVIEATLDPEKGYMRSKESTDIYSTREPQLAFHQRISFCLDLHNQS 453

Query: 540 VK 545
           VK
Sbjct: 454 VK 455

>RPN3_SCHPO (O42897) Probable 26S proteasome regulatory subunit rpn3|
          Length = 497

 Score =  177 bits (448), Expect = 2e-44
 Identities = 96/183 (52%), Positives = 122/183 (66%), Gaps = 2/183 (1%)
 Frame = +3

Query: 3   RKAPAA--ARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDL 176
           RKAP    A  F     K  I+V+LL+GEIPER +F QK +++ L PY  ++ AVRIGDL
Sbjct: 276 RKAPNTVYAVQFLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIGDL 335

Query: 177 ELFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGN 356
             F     K+ + F  D  + LI RLRH VI+TGLR IS+SYSRISL D+  KL LD+  
Sbjct: 336 CAFTDALSKYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEE 395

Query: 357 PVADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNE 536
               AE IVAK IRDG IDA+IDH+N +M S E  D+YST +PQ AF+ RI FCL +HN+
Sbjct: 396 ---SAEYIVAKGIRDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERIQFCLALHND 452

Query: 537 AVK 545
           ++K
Sbjct: 453 SIK 455

>PSD3_CAEEL (Q04908) 26S proteasome non-ATPase regulatory subunit 3 (26S|
           proteasome regulatory subunit rpn-3)
          Length = 504

 Score =  160 bits (404), Expect = 3e-39
 Identities = 91/186 (48%), Positives = 122/186 (65%), Gaps = 5/186 (2%)
 Frame = +3

Query: 3   RKAPA-AARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLE 179
           RKAP   A GF+    KW +++ LL GEIP+R+VF Q   ++ L  Y +L+  VR GD+ 
Sbjct: 282 RKAPQEGAIGFKQAVQKWVVVIGLLQGEIPDRSVFRQPIYRKCLAHYLDLSRGVRDGDVA 341

Query: 180 LFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGNP 359
            F    ++F + F AD T  LIVRLR NVI+T ++ IS++YSRI + DIAKKL +     
Sbjct: 342 RFNHNLEQFKTQFEADDTLTLIVRLRQNVIKTAIKQISLAYSRIYIKDIAKKLYITN--- 398

Query: 360 VADAECIVAKAIRDGAIDATI--DHANG--WMVSKETGDVYSTNEPQAAFNSRIAFCLNM 527
             + E IVAKAI DGAIDA I  D  +G  +M S ET D+Y T+EPQA F++RI +CL +
Sbjct: 399 ETETEYIVAKAIADGAIDAVITSDVRDGPRYMQSSETADIYRTSEPQAHFDTRIRYCLEL 458

Query: 528 HNEAVK 545
           HN+AVK
Sbjct: 459 HNQAVK 464

>RPN3_YEAST (P40016) 26S proteasome regulatory subunit RPN3|
          Length = 523

 Score =  144 bits (364), Expect = 1e-34
 Identities = 77/180 (42%), Positives = 116/180 (64%), Gaps = 2/180 (1%)
 Frame = +3

Query: 3   RKAPAAAR--GFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDL 176
           RKAP  ++  GF  Q NK    ++LL+G+IPE + F Q  M+++L PY+ LT AV++ DL
Sbjct: 298 RKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLSDL 357

Query: 177 ELFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDTGN 356
           + F +   K+      D T+ L VRLR NVI+TG+R IS++Y +ISL DI  KL LD+  
Sbjct: 358 KKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQ 417

Query: 357 PVADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNE 536
            V   E +V++AIRDG I+A I+H +G++ + E  ++Y + +PQ  F+ RI F   +H+E
Sbjct: 418 TV---EYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDE 474

>CN12L_DROME (Q9VTL1) CSN12-like protein|
          Length = 395

 Score = 36.6 bits (83), Expect = 0.047
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
 Frame = +3

Query: 51  WAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLELFRAVADKFASTFSADR 230
           + + V++LLG +P +++  +      L  + +L  A++ G++  F  +            
Sbjct: 252 YLVPVKMLLGYLPSKSLLQRYD----LLLFLDLAMAMKAGNVNRFDEIVRDQELVLIRSG 307

Query: 231 THNLIVRLRHNVIRTGLRNISI--SYSRISLADIAKKLRLD--TGNPVADAECIVAKAIR 398
            + L+ +L+  V R   + + +     ++ + D    L     T   + +  CIVA  I 
Sbjct: 308 IYLLVEKLKFLVYRNLFKKVFVIRKSHQLDMGDFLSALHFVGLTDVSLDETHCIVANLIY 367

Query: 399 DGAIDATIDHA-NGWMVSKE 455
           DG I   I HA N  +VSK+
Sbjct: 368 DGKIKGYISHAHNKLVVSKQ 387

>TNR16_CHICK (P18519) Tumor necrosis factor receptor superfamily member 16|
           precursor (Low-affinity nerve growth factor receptor)
           (NGF receptor) (Gp80-LNGFR) (p75 ICD) (Low affinity
           neurotrophin receptor p75NTR)
          Length = 416

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
 Frame = +2

Query: 146 AYKCCQDWRFGTV*SCCRQICK-----HIQCRQDSQFDCEAPPQCHSNWTTQHQHFILAD 310
           AY   QD   G+   C   IC+        CR      CE   +C     +   +F+   
Sbjct: 102 AYGYFQDELSGSCKEC--SICEVGFGLMFPCRDSQDTVCE---ECPEGTFSDEANFVDPC 156

Query: 311 LPC*YCEEAKARHWESCCRCGVHCSQGHKRW 403
           LPC  CEE +    E        C   H RW
Sbjct: 157 LPCTICEENEVMVKECTATSDAECRDLHPRW 187

>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome|
           non-ATPase subunit 7)
          Length = 393

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +3

Query: 141 FELTNAVRIGDLELFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSR-ISL 317
           F+L NA+ +GD + F ++     S       H   +R +   + T +  + +   R +S 
Sbjct: 252 FQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLR-QKICLMTLIETVFVKNIRMLSF 310

Query: 318 ADIAKKLRLDTGNPVADAECIVAKAIRDGAIDATIDHAN 434
            DI+K   L    P  + E +V +AI  G +  +ID  N
Sbjct: 311 EDISKATHL----PKDNVEHLVMRAISLGLLKGSIDQVN 345

>MT_LYTPI (O02033) Metallothionein (MT) (LpMT1)|
          Length = 68

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 308 DLPC*YCEEAK--ARHWESCCRCGVHCSQGHKRWCY*CHHRPCKWLDG 445
           D+ C  C + K  A     CC  G  C +G +  C  C +  CK  DG
Sbjct: 5   DVKCFCCRDGKECACGGGECCITGKCCKEGDRTCCGKCSNAACKCADG 52

>CH601_SYNY3 (Q05972) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1)|
          Length = 540

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
 Frame = +3

Query: 144 ELTNAVRIGDLELFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISL-- 317
           EL + V    + L R  A K  +  + D T    V L H +++ GLRN++   + ISL  
Sbjct: 59  ELEDHVENTGVSLIRQAASK-TNDVAGDGTTTATV-LAHAIVKEGLRNVAAGANPISLKR 116

Query: 318 -----ADIAKKLRLDTGNPVADAECIVAKAIRDGAIDATIDHANGWMVS 449
                 D       +   PV D++ I     + GAI A  D   G M++
Sbjct: 117 GIDKATDFLVARIKEHAQPVGDSKAIA----QVGAISAGNDEEVGQMIA 161

>CSN12_CRYNE (Q5KAS8) COP9 signalosome complex subunit 12|
          Length = 403

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 5/157 (3%)
 Frame = +3

Query: 3   RKAPAAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEAL-TPYFELTNAVRIGDLE 179
           +  PA A+  +     + I +RLL G  P  ++  Q    E + TP+    NA++ GD+E
Sbjct: 239 KHCPADAKRNQELILTYLIPLRLLHGRFPSASLLSQHPRLELVFTPFI---NAIKNGDVE 295

Query: 180 LFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNI---SISYSRISLADIAKKLRLDT 350
            +    +             ++ R R   +R+  +     S   +R+ +      L+L  
Sbjct: 296 EYDRRLEWAQVRLVGMSVWLVVERAREGCLRSLFKKAWMASDKSTRVPIETFRLALKLHG 355

Query: 351 GNPVAD-AECIVAKAIRDGAIDATIDHANGWMVSKET 458
            +  +D  EC+VA  I  G +   I H    +V  +T
Sbjct: 356 VDVESDEVECMVANMIYRGYLKGYISHEKKMVVLGKT 392

>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)|
          Length = 2571

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +2

Query: 98  CFHAERNEGSSDTIF*AYKCCQDWRFGTV*SCCRQ--ICKHIQCRQDSQFDCEAPP-QCH 268
           C H  R +GS          C+ +   T   C ++  +C+ ++C Q+SQ   EAP  +C 
Sbjct: 172 CSHGPRGDGS----------CRCFAGYTGPHCDQELPVCQSLKCPQNSQCSAEAPTCKCL 221

Query: 269 SNWTTQHQHFILADLPC 319
             + TQ  +  LA  PC
Sbjct: 222 PGY-TQQDNVCLAPDPC 237

>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2|
          Length = 982

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +3

Query: 150 TNAVRIGDLELFRAVADKFASTFSADRTHNLIVRLRHNVIRTGLRNIS----ISYSRISL 317
           TN VR+ D   F     + AS  + +  H   V   HNV  T   N+S    I ++   L
Sbjct: 29  TNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKHHNVSNTSYCNLSPSLFIKFAEDVL 88

Query: 318 ADIAKKLRL 344
           +++AK++ +
Sbjct: 89  SNLAKRVEI 97

>CN12L_XENLA (Q5FWP8) CSN12-like protein|
          Length = 399

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
 Frame = +3

Query: 63  VRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLELFRAVADKFASTFSADRTHNL 242
           V++LLG +P  T+ + K  K  L  + E+T AV  G+L L      K  + F       +
Sbjct: 258 VKMLLGHMP--TIHLLK--KYDLMQFAEVTKAVSEGNLLLLTEALTKHETFFIRCGIFLI 313

Query: 243 IVRLRHNVIRTGLRNISISYS--RISLADIAKKLR-LDTGN-PVADAECIVAKAIRDGAI 410
           + +L+    R   + + +     ++SL      L+ ++ G+  + + +CI+A  I  G I
Sbjct: 314 LEKLKIISYRNLFKKVYLLLKTHQLSLDAFLVALKFMEVGDVDIDEVQCIIANLIYMGHI 373

Query: 411 DATIDHANGWMV 446
              I H +  +V
Sbjct: 374 KGYISHQHQKLV 385

>SUVH7_ARATH (Q9C5P1) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH7 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 7)
           (H3-K9-HMTase 7) (Suppressor of variegation 3-9 homolog
           protein 7) (Su(var)3-9 homolog protein 7) (Protein SET
           DOMAIN GR
          Length = 693

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 254 PPQCHSNWTTQHQHFILADLPC*YCEEAKARHWESCC 364
           P QCHS   T   HF    L C  C      H    C
Sbjct: 437 PSQCHSGMMTHEFHFDRQSLGCQNCRHQPCMHQNCTC 473

>PEX5_DEBHA (Q6BM14) Peroxisomal targeting signal receptor (Peroxin-5) (PTS1|
           receptor)
          Length = 603

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 399 DGAIDATIDHANGWMVSKETGDVYSTNEPQAAFNSRIAFCLNMHNE 536
           + AI     H N W+   + G+V + NE + A  S +  CL +H E
Sbjct: 329 EAAIQRNEGHINAWL---KLGEVQTQNEKEIAGISALEKCLELHPE 371

>MTA_SPHGR (Q26497) Metallothionein-A (MTA) (Fragment)|
          Length = 67

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 308 DLPC*YCEEAKARHWES--CCRCGVHCSQGHKRWCY*CHHRPCKWLDG 445
           D+ C  C++ K    +   CC  G  C +G    C  C +  CK  DG
Sbjct: 4   DVKCVCCQDGKECPCKGGECCITGSCCKEGDGLCCGKCSNAACKCADG 51

>MS116_ASHGO (Q750Q4) ATP-dependent RNA helicase MSS116, mitochondrial precursor|
           (EC 3.6.1.-)
          Length = 658

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = -3

Query: 464 ITSFFRHHPAICMVY---GGINSTISYG 390
           +T+F  +HPA+C ++   G +NS  SYG
Sbjct: 591 LTTFVPNHPAVCSLFNIIGPVNSKSSYG 618

>MTB_SPHGR (Q26496) Metallothionein-B (MTB) (Fragment)|
          Length = 67

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +2

Query: 308 DLPC*YC---EEAKARHWESCCRCGVHCSQGHKRWCY*CHHRPCKWLDG 445
           D+ C  C   EE   +  E CC  G  C +G    C  C +  CK  DG
Sbjct: 4   DVKCVCCQDGEECPCKGGE-CCITGTCCKEGDGLCCGKCSNAACKCADG 51

>IF2_XYLFT (Q87EV4) Translation initiation factor IF-2|
          Length = 892

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +3

Query: 309 ISLADIAKKLRLDTGNPVADAECIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQ 488
           I++AD+A+KL L +G+ V      + K      I  TIDH    +VS+E G   +     
Sbjct: 317 ITVADLAQKLALKSGDMVK----ALFKMGVMVTITQTIDHDTAVLVSEELGHKVTRASSS 372

Query: 489 AAFNSRIAFCLNMHNEAV 542
              ++ +A    +H E V
Sbjct: 373 DFEDALLAHTEELHGEPV 390

>Y855_MYCLE (O32965) Hypothetical zinc protease ML0855 (EC 3.4.99.-)|
          Length = 445

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 324 IAKKLRLDTGNPVADAECIVAKAIRDGAIDATIDHANGWM 443
           I++ L    G+ + +AEC +AK    G I   ++ +N WM
Sbjct: 340 ISEVLASVAGDGITEAECRIAKGSLRGGIILGLEDSNSWM 379

>KEULE_ARATH (Q9C5X3) SNARE-interacting protein KEULE|
          Length = 666

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 75  LGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLELFRAVADKFASTFSADRTHNLI 245
           LG++ +  VF   GMK+ +        A R G L L   +A  +   F  ++  NL+
Sbjct: 399 LGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPEKFEGEKGENLM 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,656,289
Number of Sequences: 219361
Number of extensions: 1627219
Number of successful extensions: 4662
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4653
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)