Clone Information

BLAST Search Result

Clone Name	bags13p07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DQ167205.1\| Zea mays putative wound responsive protein mRNA, ...	232	1e-57
2	gb\|AY106382.1\| Zea mays PCO146928 mRNA sequence	232	1e-57
3	ref\|XM_481914.1\| Oryza sativa (japonica cultivar-group), mRNA	208	2e-50
4	ref\|XM_507201.1\| PREDICTED Oryza sativa (japonica cultivar-group...	208	2e-50
5	dbj\|AK105899.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	2e-50
6	dbj\|AK070322.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	2e-50
7	ref\|XM_481915.1\| Oryza sativa (japonica cultivar-group), mRNA	115	2e-22
8	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	115	2e-22
9	dbj\|AP005520.3\| Oryza sativa (japonica cultivar-group) genomic D...	115	2e-22
10	dbj\|AK112035.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	115	2e-22
11	ref\|NM_179560.2\| Arabidopsis thaliana unknown protein AT1G75380 ...	50	0.008
12	ref\|NM_179559.1\| Arabidopsis thaliana unknown protein AT1G75380 ...	50	0.008
13	ref\|NM_106192.2\| Arabidopsis thaliana unknown protein AT1G75380 ...	50	0.008
14	gb\|AY066045.1\| Arabidopsis thaliana At1g75380/F1B16_15 mRNA, com...	50	0.008
15	gb\|AY054232.1\| Arabidopsis thaliana At1g75380/F1B16_15 mRNA, com...	50	0.008
16	gb\|AY087417.1\| Arabidopsis thaliana clone 35182 mRNA, complete s...	50	0.008
17	gb\|AC153972.6\| Mus musculus 10 BAC RP24-383P4 (Roswell Park Canc...	48	0.033
18	gb\|AC159504.5\| Mus musculus 10 BAC RP23-302J6 (Roswell Park Canc...	48	0.033
19	gb\|AC023754.3\|AC023754 Arabidopsis thaliana chromosome I BAC F1B...	46	0.13
20	ref\|NM_100239.3\| Arabidopsis thaliana catalytic/ protein phospha...	44	0.51
21	gb\|AE014305.1\| Homo sapiens chromosome 13q34 schizophrenia regio...	44	0.51
22	emb\|AL162717.10\| Human DNA sequence from clone RP11-123H22 on ch...	44	0.51
23	gb\|AC002560.2\|AC002560 Genomic sequence for Arabidopsis thaliana...	44	0.51
24	gb\|AF107885.2\|DJ270M14 Homo sapiens chromosome 14q24.3 clone BAC...	44	0.51
25	dbj\|AB079670.1\| Arabidopsis thaliana AtPPC6;6 mRNA for protein p...	44	0.51
26	gb\|AC138341.9\| Mus musculus chromosome 5, clone RP23-37N15, comp...	42	2.0
27	gb\|AC164562.4\| Mus musculus BAC clone RP23-148G12 from chromosom...	42	2.0
28	gb\|AC124186.3\| Mus musculus BAC clone RP23-232B20 from chromosom...	42	2.0
29	ref\|XM_724949.1\| Plasmodium yoelii yoelii str. 17XNL CCAAT-box D...	42	2.0
30	gb\|AC118595.6\| Mus musculus chromosome 3, clone RP24-481I21, com...	42	2.0
31	emb\|AL663123.1\| Human DNA sequence from clone RP11-4K3 on chromo...	42	2.0
32	dbj\|AK123218.1\| Homo sapiens cDNA FLJ41224 fis, clone BRAMY2030098	42	2.0
33	gb\|AC155839.4\| Mus musculus 6 BAC RP24-96J4 (Roswell Park Cancer...	42	2.0
34	gb\|AC069160.7\|AC069160 Arabidopsis thaliana chromosome 1 BAC T9I...	42	2.0
35	ref\|XM_715715.1\| Candida albicans SC5314 hypothetical protein (C...	40	8.0
36	ref\|XM_716227.1\| Candida albicans SC5314 hypothetical protein (S...	40	8.0
37	ref\|XM_382713.1\| Gibberella zeae PH-1 chromosome 1 predicted pro...	40	8.0
38	ref\|XM_883758.1\| Candida albicans SC5314 hypothetical protein (C...	40	8.0
39	gb\|AC121237.19\| Medicago truncatula clone mth2-22g11, complete s...	40	8.0
40	emb\|AL513205.8\| Human DNA sequence from clone RP11-432E18 on chr...	40	8.0
41	emb\|AL512506.8\| Human DNA sequence from clone RP11-5G9 on chromo...	40	8.0
42	emb\|AL049597.29\|HSJ612B15 Human DNA sequence from clone RP4-612B...	40	8.0
43	emb\|BX629349.6\| Zebrafish DNA sequence from clone CH211-53P9 in ...	40	8.0
44	gb\|AF277451.1\| Mus musculus alpha-synuclein gene, exons 1a, 1b, ...	40	8.0
45	gb\|AC012032.22\| Homo sapiens 3 BAC RP11-630D12 (Roswell Park Can...	40	8.0
46	emb\|BX571800.8\| Zebrafish DNA sequence from clone DKEY-29B15 in ...	40	8.0
47	gb\|AC162311.7\| Mus musculus 6 BAC RP23-81K19 (Roswell Park Cance...	40	8.0
48	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	40	8.0
49	dbj\|AK082366.1\| Mus musculus 0 day neonate cerebellum cDNA, RIKE...	40	8.0
50	gb\|AC159329.8\| Mus musculus 10 BAC RP23-205H9 (Roswell Park Canc...	40	8.0
51	gb\|AF163865.1\|AF163865 Mus musculus alpha-synuclein (Snca) gene,...	40	8.0
52	gb\|AC116176.4\| Homo sapiens BAC clone RP11-299D11 from 2, comple...	40	8.0
53	gb\|AC007023.3\|AC007023 Homo sapiens clone DJ0635B05, complete se...	40	8.0
54	gb\|AC099715.9\| Mus musculus chromosome 10, clone RP23-346B18, co...	40	8.0
55	emb\|BX538036.1\|HSM806202 Homo sapiens mRNA; cDNA DKFZp686D11119 ...	40	8.0
56	dbj\|AP006852.1\| Candida albicans genomic DNA, chromosome 7, comp...	40	8.0
57	gb\|CP000103.1\| Nitrosospira multiformis ATCC 25196, complete genome	40	8.0
58	dbj\|AP002534.1\| Homo sapiens genomic DNA, chromosome 1q22-q23, C...	40	8.0
59	dbj\|AB045361.1\| Homo sapiens genomic DNA, chromosome 1q22-q23, c...	40	8.0

>gb|DQ167205.1| Zea mays putative wound responsive protein mRNA, complete cds
          Length = 717

 Score =  232 bits (117), Expect = 1e-57
 Identities = 192/217 (88%)
 Strand = Plus / Plus

                                                                       
Query: 374 gtagcttcagctcctcatctgatggtaatggatacatggctagaaacttcaatgaaaatg 433
           ||||||||||||| || |||||||| ||||||||||||||| ||||||| |  || | ||
Sbjct: 182 gtagcttcagctcgtcttctgatggcaatggatacatggctggaaactttagcgacagtg 241

                                                                       
Query: 434 atgaagattatgttaattccactgtgcttgaagctgttgaggtcagaagtggatcagaag 493
           ||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||
Sbjct: 242 atgaagattatgttaattctactgtgctagaagcagttgaggtgagaagtggatcggaag 301

                                                                       
Query: 494 gatatatagtaaagatgcgagatgggaaaaacctgctgtgtgtgcataataattctcaag 553
           ||||| |  ||||||||||||||||||||||| |||  ||||| ||||| ||||||||||
Sbjct: 302 gatatgtgataaagatgcgagatgggaaaaacttgcgttgtgtccataacaattctcaag 361

                                                
Query: 554 ggagagagattccagagagtgcaccacaacctgctat 590
           ||||| | ||||||||||||||||| |||||||||||
Sbjct: 362 ggagaaatattccagagagtgcaccccaacctgctat 398

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>gb|AY106382.1| Zea mays PCO146928 mRNA sequence
          Length = 1474

 Score =  232 bits (117), Expect = 1e-57
 Identities = 192/217 (88%)
 Strand = Plus / Plus

                                                                       
Query: 374 gtagcttcagctcctcatctgatggtaatggatacatggctagaaacttcaatgaaaatg 433
           ||||||||||||| || |||||||| ||||||||||||||| ||||||| |  || | ||
Sbjct: 426 gtagcttcagctcgtcttctgatggcaatggatacatggctggaaactttagcgacagtg 485

                                                                       
Query: 434 atgaagattatgttaattccactgtgcttgaagctgttgaggtcagaagtggatcagaag 493
           ||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||
Sbjct: 486 atgaagattatgttaattctactgtgctagaagcagttgaggtgagaagtggatcggaag 545

                                                                       
Query: 494 gatatatagtaaagatgcgagatgggaaaaacctgctgtgtgtgcataataattctcaag 553
           ||||| |  ||||||||||||||||||||||| |||  ||||| ||||| ||||||||||
Sbjct: 546 gatatgtgataaagatgcgagatgggaaaaacttgcgttgtgtccataacaattctcaag 605

                                                
Query: 554 ggagagagattccagagagtgcaccacaacctgctat 590
           ||||| | ||||||||||||||||| |||||||||||
Sbjct: 606 ggagaaatattccagagagtgcaccccaacctgctat 642

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>ref|XM_481914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1460

 Score =  208 bits (105), Expect = 2e-50
 Identities = 189/217 (87%)
 Strand = Plus / Plus

                                                                       
Query: 374 gtagcttcagctcctcatctgatggtaatggatacatggctagaaacttcaatgaaaatg 433
           ||||||||||||| || || |||||||||||||| |||||| ||||||| | ||| | ||
Sbjct: 459 gtagcttcagctcgtcgtccgatggtaatggatatatggctggaaactttagtgagagtg 518

                                                                       
Query: 434 atgaagattatgttaattccactgtgcttgaagctgttgaggtcagaagtggatcagaag 493
           ||||||||||||||||||| |||||||| ||||| |||||||| ||||||||  |||| |
Sbjct: 519 atgaagattatgttaattctactgtgctagaagcagttgaggtgagaagtggggcagagg 578

                                                                       
Query: 494 gatatatagtaaagatgcgagatgggaaaaacctgctgtgtgtgcataataattctcaag 553
           ||||| || | ||||||||||||||||||||| ||   |||||||| |||||||||||||
Sbjct: 579 gatatgtaatcaagatgcgagatgggaaaaacttgagatgtgtgcacaataattctcaag 638

                                                
Query: 554 ggagagagattccagagagtgcaccacaacctgctat 590
           ||||| | |||||||| || |||||||||||||||||
Sbjct: 639 ggagaaatattccagaaagcgcaccacaacctgctat 675

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>ref|XM_507201.1| PREDICTED Oryza sativa (japonica cultivar-group), P0426E02.15-2
           mRNA
          Length = 1525

 Score =  208 bits (105), Expect = 2e-50
 Identities = 189/217 (87%)
 Strand = Plus / Plus

                                                                       
Query: 374 gtagcttcagctcctcatctgatggtaatggatacatggctagaaacttcaatgaaaatg 433
           ||||||||||||| || || |||||||||||||| |||||| ||||||| | ||| | ||
Sbjct: 439 gtagcttcagctcgtcgtccgatggtaatggatatatggctggaaactttagtgagagtg 498

                                                                       
Query: 434 atgaagattatgttaattccactgtgcttgaagctgttgaggtcagaagtggatcagaag 493
           ||||||||||||||||||| |||||||| ||||| |||||||| ||||||||  |||| |
Sbjct: 499 atgaagattatgttaattctactgtgctagaagcagttgaggtgagaagtggggcagagg 558

                                                                       
Query: 494 gatatatagtaaagatgcgagatgggaaaaacctgctgtgtgtgcataataattctcaag 553
           ||||| || | ||||||||||||||||||||| ||   |||||||| |||||||||||||
Sbjct: 559 gatatgtaatcaagatgcgagatgggaaaaacttgagatgtgtgcacaataattctcaag 618

                                                
Query: 554 ggagagagattccagagagtgcaccacaacctgctat 590
           ||||| | |||||||| || |||||||||||||||||
Sbjct: 619 ggagaaatattccagaaagcgcaccacaacctgctat 655

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>dbj|AK105899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F07, full
           insert sequence
          Length = 1460

 Score =  208 bits (105), Expect = 2e-50
 Identities = 189/217 (87%)
 Strand = Plus / Plus

                                                                       
Query: 374 gtagcttcagctcctcatctgatggtaatggatacatggctagaaacttcaatgaaaatg 433
           ||||||||||||| || || |||||||||||||| |||||| ||||||| | ||| | ||
Sbjct: 459 gtagcttcagctcgtcgtccgatggtaatggatatatggctggaaactttagtgagagtg 518

                                                                       
Query: 434 atgaagattatgttaattccactgtgcttgaagctgttgaggtcagaagtggatcagaag 493
           ||||||||||||||||||| |||||||| ||||| |||||||| ||||||||  |||| |
Sbjct: 519 atgaagattatgttaattctactgtgctagaagcagttgaggtgagaagtggggcagagg 578

                                                                       
Query: 494 gatatatagtaaagatgcgagatgggaaaaacctgctgtgtgtgcataataattctcaag 553
           ||||| || | ||||||||||||||||||||| ||   |||||||| |||||||||||||
Sbjct: 579 gatatgtaatcaagatgcgagatgggaaaaacttgagatgtgtgcacaataattctcaag 638

                                                
Query: 554 ggagagagattccagagagtgcaccacaacctgctat 590
           ||||| | |||||||| || |||||||||||||||||
Sbjct: 639 ggagaaatattccagaaagcgcaccacaacctgctat 675

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>dbj|AK070322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C20, full
           insert sequence
          Length = 1525

 Score =  208 bits (105), Expect = 2e-50
 Identities = 189/217 (87%)
 Strand = Plus / Plus

                                                                       
Query: 374 gtagcttcagctcctcatctgatggtaatggatacatggctagaaacttcaatgaaaatg 433
           ||||||||||||| || || |||||||||||||| |||||| ||||||| | ||| | ||
Sbjct: 439 gtagcttcagctcgtcgtccgatggtaatggatatatggctggaaactttagtgagagtg 498

                                                                       
Query: 434 atgaagattatgttaattccactgtgcttgaagctgttgaggtcagaagtggatcagaag 493
           ||||||||||||||||||| |||||||| ||||| |||||||| ||||||||  |||| |
Sbjct: 499 atgaagattatgttaattctactgtgctagaagcagttgaggtgagaagtggggcagagg 558

                                                                       
Query: 494 gatatatagtaaagatgcgagatgggaaaaacctgctgtgtgtgcataataattctcaag 553
           ||||| || | ||||||||||||||||||||| ||   |||||||| |||||||||||||
Sbjct: 559 gatatgtaatcaagatgcgagatgggaaaaacttgagatgtgtgcacaataattctcaag 618

                                                
Query: 554 ggagagagattccagagagtgcaccacaacctgctat 590
           ||||| | |||||||| || |||||||||||||||||
Sbjct: 619 ggagaaatattccagaaagcgcaccacaacctgctat 655

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>ref|XM_481915.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1119

 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 469 gttgaggtcagaagtggatcagaaggatatatagtaaagatgcgagatgggaaaaacctg 528
           |||||||| ||||||||  |||| |||||| || | ||||||||||||||||||||| ||
Sbjct: 259 gttgaggtgagaagtggggcagagggatatgtaatcaagatgcgagatgggaaaaacttg 318

                                                                       
Query: 529 ctgtgtgtgcataataattctcaagggagagagattccagagagtgcaccacaacctgct 588
              |||||||| |||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct: 319 agatgtgtgcacaataattctcaagggagaaatattccagaaagcgcaccacaacctgct 378

             
Query: 589 at 590
           ||
Sbjct: 379 at 380

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                            
Query: 469      gttgaggtcagaagtggatcagaaggatatatagtaaagatgcgagatgggaaaaacctg 528
                |||||||| ||||||||  |||| |||||| || | ||||||||||||||||||||| ||
Sbjct: 16335945 gttgaggtgagaagtggggcagagggatatgtaatcaagatgcgagatgggaaaaacttg 16335886

                                                                            
Query: 529      ctgtgtgtgcataataattctcaagggagagagattccagagagtgcaccacaacctgct 588
                   |||||||| |||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct: 16335885 agatgtgtgcacaataattctcaagggagaaatattccagaaagcgcaccacaacctgct 16335826

                  
Query: 589      at 590
                ||
Sbjct: 16335825 at 16335824



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                            
Query: 374      gtagcttcagctcctcatctgatggtaatggatacatggctagaaacttcaatgaaaatg 433
                ||||||||||||| || || |||||||||||||| |||||| ||||||| | ||| | ||
Sbjct: 16337152 gtagcttcagctcgtcgtccgatggtaatggatatatggctggaaactttagtgagagtg 16337093

                                                  
Query: 434      atgaagattatgttaattccactgtgcttgaagc 467
                ||||||||||||||||||| |||||||| |||||
Sbjct: 16337092 atgaagattatgttaattctactgtgctagaagc 16337059

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>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0426E02
          Length = 166985

 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                         
Query: 469   gttgaggtcagaagtggatcagaaggatatatagtaaagatgcgagatgggaaaaacctg 528
             |||||||| ||||||||  |||| |||||| || | ||||||||||||||||||||| ||
Sbjct: 41797 gttgaggtgagaagtggggcagagggatatgtaatcaagatgcgagatgggaaaaacttg 41738

                                                                         
Query: 529   ctgtgtgtgcataataattctcaagggagagagattccagagagtgcaccacaacctgct 588
                |||||||| |||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct: 41737 agatgtgtgcacaataattctcaagggagaaatattccagaaagcgcaccacaacctgct 41678

               
Query: 589   at 590
             ||
Sbjct: 41677 at 41676



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                         
Query: 374   gtagcttcagctcctcatctgatggtaatggatacatggctagaaacttcaatgaaaatg 433
             ||||||||||||| || || |||||||||||||| |||||| ||||||| | ||| | ||
Sbjct: 43004 gtagcttcagctcgtcgtccgatggtaatggatatatggctggaaactttagtgagagtg 42945

                                               
Query: 434   atgaagattatgttaattccactgtgcttgaagc 467
             ||||||||||||||||||| |||||||| |||||
Sbjct: 42944 atgaagattatgttaattctactgtgctagaagc 42911

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>dbj|AK112035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G04, full
           insert sequence
          Length = 1119

 Score =  115 bits (58), Expect = 2e-22
 Identities = 106/122 (86%)
 Strand = Plus / Plus

                                                                       
Query: 469 gttgaggtcagaagtggatcagaaggatatatagtaaagatgcgagatgggaaaaacctg 528
           |||||||| ||||||||  |||| |||||| || | ||||||||||||||||||||| ||
Sbjct: 259 gttgaggtgagaagtggggcagagggatatgtaatcaagatgcgagatgggaaaaacttg 318

                                                                       
Query: 529 ctgtgtgtgcataataattctcaagggagagagattccagagagtgcaccacaacctgct 588
              |||||||| |||||||||||||||||| | |||||||| || |||||||||||||||
Sbjct: 319 agatgtgtgcacaataattctcaagggagaaatattccagaaagcgcaccacaacctgct 378

             
Query: 589 at 590
           ||
Sbjct: 379 at 380

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>ref|NM_179560.2| Arabidopsis thaliana unknown protein AT1G75380 transcript variant
           AT1G75380.3 mRNA, complete cds
          Length = 1459

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 391 tctgatggtaatggatacatggctagaaacttcaatgaaaatgatgaagattatgttaat 450
           |||||||||||||||  ||  |||  ||| ||||||||||||||||| || |||||||| 
Sbjct: 364 tctgatggtaatggaagcactgctgaaaatttcaatgaaaatgatgaggaatatgttaac 423

                                                    
Query: 451 tccactgtgcttgaagctgttgaggtcagaagtggatcaga 491
           || | |||  | ||||||||||| || | ||||||| ||||
Sbjct: 424 tctagtgtagtggaagctgttgaagtaaaaagtggagcaga 464

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>ref|NM_179559.1| Arabidopsis thaliana unknown protein AT1G75380 transcript variant
           AT1G75380.2 mRNA, complete cds
          Length = 1467

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 391 tctgatggtaatggatacatggctagaaacttcaatgaaaatgatgaagattatgttaat 450
           |||||||||||||||  ||  |||  ||| ||||||||||||||||| || |||||||| 
Sbjct: 372 tctgatggtaatggaagcactgctgaaaatttcaatgaaaatgatgaggaatatgttaac 431

                                                    
Query: 451 tccactgtgcttgaagctgttgaggtcagaagtggatcaga 491
           || | |||  | ||||||||||| || | ||||||| ||||
Sbjct: 432 tctagtgtagtggaagctgttgaagtaaaaagtggagcaga 472

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>ref|NM_106192.2| Arabidopsis thaliana unknown protein AT1G75380 transcript variant
           AT1G75380.1 mRNA, complete cds
          Length = 1547

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 391 tctgatggtaatggatacatggctagaaacttcaatgaaaatgatgaagattatgttaat 450
           |||||||||||||||  ||  |||  ||| ||||||||||||||||| || |||||||| 
Sbjct: 377 tctgatggtaatggaagcactgctgaaaatttcaatgaaaatgatgaggaatatgttaac 436

                                                    
Query: 451 tccactgtgcttgaagctgttgaggtcagaagtggatcaga 491
           || | |||  | ||||||||||| || | ||||||| ||||
Sbjct: 437 tctagtgtagtggaagctgttgaagtaaaaagtggagcaga 477

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>gb|AY066045.1| Arabidopsis thaliana At1g75380/F1B16_15 mRNA, complete cds
          Length = 978

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 391 tctgatggtaatggatacatggctagaaacttcaatgaaaatgatgaagattatgttaat 450
           |||||||||||||||  ||  |||  ||| ||||||||||||||||| || |||||||| 
Sbjct: 208 tctgatggtaatggaagcactgctgaaaatttcaatgaaaatgatgaggaatatgttaac 267

                                                    
Query: 451 tccactgtgcttgaagctgttgaggtcagaagtggatcaga 491
           || | |||  | ||||||||||| || | ||||||| ||||
Sbjct: 268 tctagtgtagtggaagctgttgaagtaaaaagtggagcaga 308

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>gb|AY054232.1| Arabidopsis thaliana At1g75380/F1B16_15 mRNA, complete cds
          Length = 1374

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 391 tctgatggtaatggatacatggctagaaacttcaatgaaaatgatgaagattatgttaat 450
           |||||||||||||||  ||  |||  ||| ||||||||||||||||| || |||||||| 
Sbjct: 372 tctgatggtaatggaagcactgctgaaaatttcaatgaaaatgatgaggaatatgttaac 431

                                                    
Query: 451 tccactgtgcttgaagctgttgaggtcagaagtggatcaga 491
           || | |||  | ||||||||||| || | ||||||| ||||
Sbjct: 432 tctagtgtagtggaagctgttgaagtaaaaagtggagcaga 472

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>gb|AY087417.1| Arabidopsis thaliana clone 35182 mRNA, complete sequence
          Length = 1449

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 391 tctgatggtaatggatacatggctagaaacttcaatgaaaatgatgaagattatgttaat 450
           |||||||||||||||  ||  |||  ||| ||||||||||||||||| || |||||||| 
Sbjct: 377 tctgatggtaatggaagcactgctgaaaatttcaatgaaaatgatgaggaatatgttaac 436

                                                    
Query: 451 tccactgtgcttgaagctgttgaggtcagaagtggatcaga 491
           || | |||  | ||||||||||| || | ||||||| ||||
Sbjct: 437 tctagtgtagtggaagctgttgaagtaaaaagtggagcaga 477

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>gb|AC153972.6| Mus musculus 10 BAC RP24-383P4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 182933

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 551    aagggagagagattccagagagtg 574
              ||||||||||||||||||||||||
Sbjct: 112164 aagggagagagattccagagagtg 112141

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>gb|AC159504.5| Mus musculus 10 BAC RP23-302J6 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 201259

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 551  aagggagagagattccagagagtg 574
            ||||||||||||||||||||||||
Sbjct: 2025 aagggagagagattccagagagtg 2002

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>gb|AC023754.3|AC023754 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete
             sequence
          Length = 100685

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 391   tctgatggtaatggatacatggctagaaacttcaatgaaaatgatgaagattatgttaa 449
             |||||||||||||||  ||  |||  ||| ||||||||||||||||| || ||||||||
Sbjct: 78384 tctgatggtaatggaagcactgctgaaaatttcaatgaaaatgatgaggaatatgttaa 78442

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>ref|NM_100239.3| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT1G03590
            mRNA, complete cds
          Length = 1797

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 489  agaaggatatatagtaaagatg 510
            ||||||||||||||||||||||
Sbjct: 1790 agaaggatatatagtaaagatg 1769

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>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of
              11 of the complete sequence
          Length = 613322

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 551    aagggagagagattccagagag 572
              ||||||||||||||||||||||
Sbjct: 257775 aagggagagagattccagagag 257754

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>emb|AL162717.10| Human DNA sequence from clone RP11-123H22 on chromosome 13q14.2-21.2
              Contains a novel gene, complete sequence
          Length = 153859

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 551    aagggagagagattccagagag 572
              ||||||||||||||||||||||
Sbjct: 137305 aagggagagagattccagagag 137284

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>gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I,
             complete sequence
          Length = 101176

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 489   agaaggatatatagtaaagatg 510
             ||||||||||||||||||||||
Sbjct: 58075 agaaggatatatagtaaagatg 58096

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>gb|AF107885.2|DJ270M14 Homo sapiens chromosome 14q24.3 clone BAC270M14 transforming growth
             factor-beta 3 (TGF-beta 3) gene, complete cds; and unknown
             genes
          Length = 192126

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 424   aatgaaaatgatgaagattatg 445
             ||||||||||||||||||||||
Sbjct: 72482 aatgaaaatgatgaagattatg 72461

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>dbj|AB079670.1| Arabidopsis thaliana AtPPC6;6 mRNA for protein phosphatase 2C,
            partial cds
          Length = 1491

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 489  agaaggatatatagtaaagatg 510
            ||||||||||||||||||||||
Sbjct: 1482 agaaggatatatagtaaagatg 1461

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>gb|AC138341.9| Mus musculus chromosome 5, clone RP23-37N15, complete sequence
          Length = 176410

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 414    tagaaacttcaatgaaaatga 434
              |||||||||||||||||||||
Sbjct: 115159 tagaaacttcaatgaaaatga 115139

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>gb|AC164562.4| Mus musculus BAC clone RP23-148G12 from chromosome 3, complete
            sequence
          Length = 202591

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 568  gagagtgcaccacaacctgct 588
            |||||||||||||||||||||
Sbjct: 4463 gagagtgcaccacaacctgct 4443

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>gb|AC124186.3| Mus musculus BAC clone RP23-232B20 from chromosome 3, complete sequence
          Length = 195957

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 568    gagagtgcaccacaacctgct 588
              |||||||||||||||||||||
Sbjct: 122310 gagagtgcaccacaacctgct 122290

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>ref|XM_724949.1| Plasmodium yoelii yoelii str. 17XNL CCAAT-box DNA binding protein
           subunit B (PY02177) partial mRNA
          Length = 1479

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 424 aatgaaaatgatgaagattat 444
           |||||||||||||||||||||
Sbjct: 940 aatgaaaatgatgaagattat 960

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>gb|AC118595.6| Mus musculus chromosome 3, clone RP24-481I21, complete sequence
          Length = 248188

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 423    caatgaaaatgatgaagattatgtt 447
              |||| ||||||||||||||||||||
Sbjct: 115230 caattaaaatgatgaagattatgtt 115206

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>emb|AL663123.1| Human DNA sequence from clone RP11-4K3 on chromosome 1 Contains the 3'
             end of a novel gene (KIAA1037), a novel gene, a SMT3
             suppressor of mif two 3 homolog 2 (yeast) (SMT3H2)
             pseudogene, a novel gene (DKFZP564D0478), an  actin, beta
             (ACTB) pseudogene, the gene for  NADPH oxidase-related, C2
             domain-containing protein (JFC1), the MAP3K6 gene for
             mitogen-activated protein kinase kinase kinase 6, the FCN3
             gene for ficolin (collagen/fibrinogen domain containing) 3
             (Hakata antigen) and a CpG island, complete sequence
          Length = 81740

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   agcagggcttcctgctgccct 239
             |||||||||||||||||||||
Sbjct: 45492 agcagggcttcctgctgccct 45472

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>dbj|AK123218.1| Homo sapiens cDNA FLJ41224 fis, clone BRAMY2030098
          Length = 2861

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 219 agcagggcttcctgctgccct 239
           |||||||||||||||||||||
Sbjct: 408 agcagggcttcctgctgccct 428

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>gb|AC155839.4| Mus musculus 6 BAC RP24-96J4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 173368

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 217    caagcagggcttcctgctgcc 237
              |||||||||||||||||||||
Sbjct: 137490 caagcagggcttcctgctgcc 137510

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>gb|AC069160.7|AC069160 Arabidopsis thaliana chromosome 1 BAC T9I1 genomic sequence, complete
             sequence
          Length = 99241

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 366   tatttgtcgtagcttcagctc 386
             |||||||||||||||||||||
Sbjct: 49147 tatttgtcgtagcttcagctc 49127

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>ref|XM_715715.1| Candida albicans SC5314 hypothetical protein (CaO19_13833), mRNA
          Length = 2340

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 424 aatgaaaatgatgaagattatgttaatt 451
           |||||||||||||||||||  |||||||
Sbjct: 904 aatgaaaatgatgaagattgggttaatt 931

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>ref|XM_716227.1| Candida albicans SC5314 hypothetical protein (SEC1) partial mRNA
          Length = 2340

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 424 aatgaaaatgatgaagattatgttaatt 451
           |||||||||||||||||||  |||||||
Sbjct: 904 aatgaaaatgatgaagattgggttaatt 931

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>ref|XM_382713.1| Gibberella zeae PH-1 chromosome 1 predicted protein (FG02537.1)
           partial mRNA
          Length = 342

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 ctcattgatcaaatctggac 268
           ||||||||||||||||||||
Sbjct: 147 ctcattgatcaaatctggac 128

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>ref|XM_883758.1| Candida albicans SC5314 hypothetical protein (CaJ7.0271) partial
           mRNA
          Length = 2340

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 424 aatgaaaatgatgaagattatgttaatt 451
           |||||||||||||||||||  |||||||
Sbjct: 904 aatgaaaatgatgaagattgggttaatt 931

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>gb|AC121237.19| Medicago truncatula clone mth2-22g11, complete sequence
          Length = 127731

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    attggtcacatactataaag 77
             ||||||||||||||||||||
Sbjct: 37044 attggtcacatactataaag 37063

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>emb|AL513205.8| Human DNA sequence from clone RP11-432E18 on chromosome 1 Contains the
              OR6K1P olfactory receptor, family 6, subfamily K, member 1
              pseudogene, the OR6K2 gene for olfactory receptor, family
              6, subfamily K, member 2, the OR6K3 gene for olfactory
              receptor, family 6, subfamily K, member 3, the OR6K4P
              olfactory receptor, family 6, subfamily K, member 4
              pseudogene, the OR6K5P olfactory receptor, family 6,
              subfamily K, member 5 pseudogene, the OR6K6 gene for
              olfactory receptor, family 6, subfamily K, member 6, the
              OR6N1 gene for olfactory receptor, family 6, subfamily N,
              member 1, the OR6N2 gene for olfactory receptor, family 6,
              subfamily N, member 2, the OR2AQ1P olfactory receptor,
              family 2, subfamily AQ, member 1 pseudogene, the OR10AA1P
              olfactory receptor, family 10, subfamily AA, member 1
              pseudogene and the MNDA gene for myeloid cell nuclear
              differentiation antigen, complete sequence
          Length = 180999

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    ttaattccactgtgcttgaa 465
              ||||||||||||||||||||
Sbjct: 104333 ttaattccactgtgcttgaa 104352

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>emb|AL512506.8| Human DNA sequence from clone RP11-5G9 on chromosome 13 Contains the 5'
             end of a novel gene, parts of 2 novel genes, a
             diacylglycerol kinase pseudogene and a CpG island,
             complete sequence
          Length = 167875

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   aatgaaaatgatgaagatta 443
             ||||||||||||||||||||
Sbjct: 74484 aatgaaaatgatgaagatta 74503

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>emb|AL049597.29|HSJ612B15 Human DNA sequence from clone RP4-612B15 on chromosome 1p22.2-31.1
              Contains the 3' end of a novel gene, the SH3GLB1 gene for
              SH3-domain GRB2-like endophilin B1, a ribosomal protein L17
              (RPL17) pseudogene and a CpG island, complete sequence
          Length = 127820

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 544    aattctcaagggagagagat 563
              ||||||||||||||||||||
Sbjct: 106846 aattctcaagggagagagat 106865

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>emb|BX629349.6| Zebrafish DNA sequence from clone CH211-53P9 in linkage group 5, complete
              sequence
          Length = 142044

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    actcattgatcaaatctgga 267
              ||||||||||||||||||||
Sbjct: 104019 actcattgatcaaatctgga 104000

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>gb|AF277451.1| Mus musculus alpha-synuclein gene, exons 1a, 1b, 2 and 3 and partial
             cds, alternatively spliced
          Length = 22164

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   gctagaaacttcaatgaaaa 431
             ||||||||||||||||||||
Sbjct: 13763 gctagaaacttcaatgaaaa 13744

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>gb|AC012032.22| Homo sapiens 3 BAC RP11-630D12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 122889

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   atgatgaagattatgttaat 450
             ||||||||||||||||||||
Sbjct: 58562 atgatgaagattatgttaat 58581

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>emb|BX571800.8| Zebrafish DNA sequence from clone DKEY-29B15 in linkage group 5,
             complete sequence
          Length = 195520

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   actcattgatcaaatctgga 267
             ||||||||||||||||||||
Sbjct: 92342 actcattgatcaaatctgga 92361

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>gb|AC162311.7| Mus musculus 6 BAC RP23-81K19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 266441

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    gctagaaacttcaatgaaaa 431
              ||||||||||||||||||||
Sbjct: 172139 gctagaaacttcaatgaaaa 172158

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     gcagggcttcctgctgccct 239
               ||||||||||||||||||||
Sbjct: 2389600 gcagggcttcctgctgccct 2389619

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>dbj|AK082366.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230040N17
           product:unclassifiable, full insert sequence
          Length = 1535

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 412 gctagaaacttcaatgaaaa 431
           ||||||||||||||||||||
Sbjct: 242 gctagaaacttcaatgaaaa 223

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>gb|AC159329.8| Mus musculus 10 BAC RP23-205H9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 213287

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    ctgcccttgtcaacaactca 252
              ||||||||||||||||||||
Sbjct: 105689 ctgcccttgtcaacaactca 105670

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>gb|AF163865.1|AF163865 Mus musculus alpha-synuclein (Snca) gene, complete cds
          Length = 118777

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   gctagaaacttcaatgaaaa 431
             ||||||||||||||||||||
Sbjct: 21954 gctagaaacttcaatgaaaa 21935

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>gb|AC116176.4| Homo sapiens BAC clone RP11-299D11 from 2, complete sequence
          Length = 96974

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   ttaattccactgtgcttgaa 465
             ||||||||||||||||||||
Sbjct: 26479 ttaattccactgtgcttgaa 26460

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>gb|AC007023.3|AC007023 Homo sapiens clone DJ0635B05, complete sequence
          Length = 148454

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 431    atgatgaagattatgttaat 450
              ||||||||||||||||||||
Sbjct: 111919 atgatgaagattatgttaat 111938

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>gb|AC099715.9| Mus musculus chromosome 10, clone RP23-346B18, complete sequence
          Length = 206811

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    ctgcccttgtcaacaactca 252
              ||||||||||||||||||||
Sbjct: 190809 ctgcccttgtcaacaactca 190790

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>emb|BX538036.1|HSM806202 Homo sapiens mRNA; cDNA DKFZp686D11119 (from clone DKFZp686D11119)
          Length = 2876

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 424  aatgaaaatgatgaagatta 443
            ||||||||||||||||||||
Sbjct: 2654 aatgaaaatgatgaagatta 2673

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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 424    aatgaaaatgatgaagattatgttaatt 451
              |||||||||||||||||||  |||||||
Sbjct: 503560 aatgaaaatgatgaagattgggttaatt 503587

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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     ggaacggccgttgctggtgg 138
               ||||||||||||||||||||
Sbjct: 1103295 ggaacggccgttgctggtgg 1103314

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>dbj|AP002534.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 3/4
          Length = 300000

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   ttaattccactgtgcttgaa 465
             ||||||||||||||||||||
Sbjct: 23472 ttaattccactgtgcttgaa 23491

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>dbj|AB045361.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:713i11, complete
             sequence
          Length = 148081

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   ttaattccactgtgcttgaa 465
             ||||||||||||||||||||
Sbjct: 70575 ttaattccactgtgcttgaa 70594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,820,426
Number of Sequences: 3902068
Number of extensions: 5820426
Number of successful extensions: 111037
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110860
Number of HSP's gapped (non-prelim): 170
length of query: 591
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 568
effective length of database: 17,143,297,704
effective search space: 9737393095872
effective search space used: 9737393095872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result