ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags14e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ606031.1| Triticum aestivum partial mRNA for putative pyri... 379 e-102
2gb|BT009021.1| Triticum aestivum clone wdk3c.pk007.j3:fis, full ... 355 4e-95
3gb|AY107334.1| Zea mays PCO062090 mRNA sequence 230 2e-57
4dbj|AK120153.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 3e-31
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 109 4e-21
6dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic D... 109 4e-21
7gb|AC110573.11| Mus musculus chromosome 16, clone RP23-322A15, c... 40 3.1
8gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete ... 40 3.1
9gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.1
10emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on ch... 40 3.1

>emb|AJ606031.1| Triticum aestivum partial mRNA for putative pyridine
           nucleotide-disulphide oxidoreductase
          Length = 723

 Score =  379 bits (191), Expect = e-102
 Identities = 227/240 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 244 ctacatgataccatcctgaaggaatctttggacaccaaaggaagagtaatggtggaaaag 303

                                                                       
Query: 61  gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120
           ||| | | |||||||||| || |||||||||||||||| |||||||| || |||||||||
Sbjct: 304 gacctaagagtgaagggttacaataacatttttgcaattggtgacatcaccgatattcct 363

                                                                       
Query: 121 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagcgaagaacctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 364 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagccaagaacctgaag 423

                                                                       
Query: 181 ctactgatcaaggggtngcctccgagcaagctcgccacctacagcaccgggttcccgctg 240
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 424 ctactgatcaaggggtcgcctccgagcaagctcgccacctacagcaccggcttcccgctg 483



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>gb|BT009021.1| Triticum aestivum clone wdk3c.pk007.j3:fis, full insert mRNA
           sequence
          Length = 1349

 Score =  355 bits (179), Expect = 4e-95
 Identities = 224/240 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60
           |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct: 755 ctacatgataccatcctgaaggaatctttggacaccaaaggaagaataatggtggaaaag 814

                                                                       
Query: 61  gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120
           ||| ||| |||||||||| || |||||||||||||||| |||||||| || |||||||||
Sbjct: 815 gacctgagagtgaagggttacaataacatttttgcaattggtgacatcactgatattcct 874

                                                                       
Query: 121 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagcgaagaacctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 875 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagccaagaacctgaag 934

                                                                       
Query: 181 ctactgatcaaggggtngcctccgagcaagctcgccacctacagcaccgggttcccgctg 240
           || ||||||||||||  |||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 935 ctgctgatcaagggggcgcctccgagcaagctcgccacctacatcaccggcttcccgctg 994



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>gb|AY107334.1| Zea mays PCO062090 mRNA sequence
          Length = 1457

 Score =  230 bits (116), Expect = 2e-57
 Identities = 174/194 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60
           ||||||||||||||||| |||||||| ||||| | |||||| |||||||||||||| |||
Sbjct: 723 ctacatgataccatcctaaaggaatccttggatagcaaggggagagtaatggtggaaaag 782

                                                                       
Query: 61  gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120
           || || | |||||| |||    ||||||||||||| || |||||||| ||||||||||||
Sbjct: 783 gatttaagagtgaaaggttttaataacatttttgcgattggtgacatcacagatattcct 842

                                                                       
Query: 121 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagcgaagaacctgaag 180
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 843 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctagtggcgaagaacctgaag 902

                         
Query: 181 ctactgatcaaggg 194
           ||||||| ||||||
Sbjct: 903 ctactgaccaaggg 916



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>dbj|AK120153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029P18, full
            insert sequence
          Length = 2277

 Score =  143 bits (72), Expect = 3e-31
 Identities = 148/174 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1    ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60
            |||||||||||||| || |||||||| ||||||| |||||||||| |||||||||| |||
Sbjct: 1723 ctacatgataccattctaaaggaatccttggacaacaagggaagactaatggtggaaaag 1782

                                                                        
Query: 61   gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120
            || || | | | || ||| |  |||||||||||||||| |||||||| ||||||||||||
Sbjct: 1783 gatttaagaataaaaggttataataacatttttgcaattggtgacatcacagatattcct 1842

                                                                  
Query: 121  gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagcgaagaac 174
            ||||| || ||||| ||||| ||||| ||||| || ||||| ||||| ||||||
Sbjct: 1843 gaaattaagcaaggttaccttgcccataagcatgctctgctagtagcaaagaac 1896



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  109 bits (55), Expect = 4e-21
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                           
Query: 1       ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60
               |||||||||||||| || |||||||| ||||||| |||||||||| |||||||||| |||
Sbjct: 2778247 ctacatgataccattctaaaggaatccttggacaacaagggaagactaatggtggaaaag 2778306

                                                                           
Query: 61      gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120
               || || | | | || ||| |  |||||||||||||||| |||||||| ||||||||||||
Sbjct: 2778307 gatttaagaataaaaggttataataacatttttgcaattggtgacatcacagatattcct 2778366

                
Query: 121     g 121
               |
Sbjct: 2778367 g 2778367



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>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0050G13
          Length = 150685

 Score =  109 bits (55), Expect = 4e-21
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                         
Query: 1     ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60
             |||||||||||||| || |||||||| ||||||| |||||||||| |||||||||| |||
Sbjct: 46475 ctacatgataccattctaaaggaatccttggacaacaagggaagactaatggtggaaaag 46534

                                                                         
Query: 61    gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120
             || || | | | || ||| |  |||||||||||||||| |||||||| ||||||||||||
Sbjct: 46535 gatttaagaataaaaggttataataacatttttgcaattggtgacatcacagatattcct 46594

              
Query: 121   g 121
             |
Sbjct: 46595 g 46595



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>gb|AC110573.11| Mus musculus chromosome 16, clone RP23-322A15, complete sequence
          Length = 190173

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    cagatattcctgaaatcaaa 129
              ||||||||||||||||||||
Sbjct: 100866 cagatattcctgaaatcaaa 100847



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>gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete sequence
          Length = 38345

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   acctcgcccagaagcacgcg 156
             ||||||||||||||||||||
Sbjct: 35587 acctcgcccagaagcacgcg 35606



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 137    acctcgcccagaagcacgcgctgc 160
              |||||| |||||||||||||||||
Sbjct: 127624 acctcgtccagaagcacgcgctgc 127601



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>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete
             sequence
          Length = 201738

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    accaagggaagagtaatggtggag 57
             ||||||||||||||||||| ||||
Sbjct: 81460 accaagggaagagtaatgggggag 81483


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,729,555
Number of Sequences: 3902068
Number of extensions: 1729555
Number of successful extensions: 30445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30391
Number of HSP's gapped (non-prelim): 50
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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