| Clone Name | bags14e04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ606031.1| Triticum aestivum partial mRNA for putative pyridine nucleotide-disulphide oxidoreductase Length = 723 Score = 379 bits (191), Expect = e-102 Identities = 227/240 (94%) Strand = Plus / Plus Query: 1 ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 244 ctacatgataccatcctgaaggaatctttggacaccaaaggaagagtaatggtggaaaag 303 Query: 61 gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120 ||| | | |||||||||| || |||||||||||||||| |||||||| || ||||||||| Sbjct: 304 gacctaagagtgaagggttacaataacatttttgcaattggtgacatcaccgatattcct 363 Query: 121 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagcgaagaacctgaag 180 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 364 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagccaagaacctgaag 423 Query: 181 ctactgatcaaggggtngcctccgagcaagctcgccacctacagcaccgggttcccgctg 240 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 424 ctactgatcaaggggtcgcctccgagcaagctcgccacctacagcaccggcttcccgctg 483
>gb|BT009021.1| Triticum aestivum clone wdk3c.pk007.j3:fis, full insert mRNA sequence Length = 1349 Score = 355 bits (179), Expect = 4e-95 Identities = 224/240 (93%) Strand = Plus / Plus Query: 1 ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct: 755 ctacatgataccatcctgaaggaatctttggacaccaaaggaagaataatggtggaaaag 814 Query: 61 gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120 ||| ||| |||||||||| || |||||||||||||||| |||||||| || ||||||||| Sbjct: 815 gacctgagagtgaagggttacaataacatttttgcaattggtgacatcactgatattcct 874 Query: 121 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagcgaagaacctgaag 180 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 875 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagccaagaacctgaag 934 Query: 181 ctactgatcaaggggtngcctccgagcaagctcgccacctacagcaccgggttcccgctg 240 || |||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 935 ctgctgatcaagggggcgcctccgagcaagctcgccacctacatcaccggcttcccgctg 994
>gb|AY107334.1| Zea mays PCO062090 mRNA sequence Length = 1457 Score = 230 bits (116), Expect = 2e-57 Identities = 174/194 (89%) Strand = Plus / Plus Query: 1 ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60 ||||||||||||||||| |||||||| ||||| | |||||| |||||||||||||| ||| Sbjct: 723 ctacatgataccatcctaaaggaatccttggatagcaaggggagagtaatggtggaaaag 782 Query: 61 gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120 || || | |||||| ||| ||||||||||||| || |||||||| |||||||||||| Sbjct: 783 gatttaagagtgaaaggttttaataacatttttgcgattggtgacatcacagatattcct 842 Query: 121 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagcgaagaacctgaag 180 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 843 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctagtggcgaagaacctgaag 902 Query: 181 ctactgatcaaggg 194 ||||||| |||||| Sbjct: 903 ctactgaccaaggg 916
>dbj|AK120153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029P18, full insert sequence Length = 2277 Score = 143 bits (72), Expect = 3e-31 Identities = 148/174 (85%) Strand = Plus / Plus Query: 1 ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60 |||||||||||||| || |||||||| ||||||| |||||||||| |||||||||| ||| Sbjct: 1723 ctacatgataccattctaaaggaatccttggacaacaagggaagactaatggtggaaaag 1782 Query: 61 gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120 || || | | | || ||| | |||||||||||||||| |||||||| |||||||||||| Sbjct: 1783 gatttaagaataaaaggttataataacatttttgcaattggtgacatcacagatattcct 1842 Query: 121 gaaatcaaacaagggtacctcgcccagaagcacgcgctgctggtagcgaagaac 174 ||||| || ||||| ||||| ||||| ||||| || ||||| ||||| |||||| Sbjct: 1843 gaaattaagcaaggttaccttgcccataagcatgctctgctagtagcaaagaac 1896
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 109 bits (55), Expect = 4e-21 Identities = 104/121 (85%) Strand = Plus / Plus Query: 1 ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60 |||||||||||||| || |||||||| ||||||| |||||||||| |||||||||| ||| Sbjct: 2778247 ctacatgataccattctaaaggaatccttggacaacaagggaagactaatggtggaaaag 2778306 Query: 61 gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120 || || | | | || ||| | |||||||||||||||| |||||||| |||||||||||| Sbjct: 2778307 gatttaagaataaaaggttataataacatttttgcaattggtgacatcacagatattcct 2778366 Query: 121 g 121 | Sbjct: 2778367 g 2778367
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 109 bits (55), Expect = 4e-21 Identities = 104/121 (85%) Strand = Plus / Plus Query: 1 ctacatgataccatcctgaaggaatctttggacaccaagggaagagtaatggtggagaag 60 |||||||||||||| || |||||||| ||||||| |||||||||| |||||||||| ||| Sbjct: 46475 ctacatgataccattctaaaggaatccttggacaacaagggaagactaatggtggaaaag 46534 Query: 61 gacttganagtgaagggtcacgataacatttttgcaatcggtgacatnacagatattcct 120 || || | | | || ||| | |||||||||||||||| |||||||| |||||||||||| Sbjct: 46535 gatttaagaataaaaggttataataacatttttgcaattggtgacatcacagatattcct 46594 Query: 121 g 121 | Sbjct: 46595 g 46595
>gb|AC110573.11| Mus musculus chromosome 16, clone RP23-322A15, complete sequence Length = 190173 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cagatattcctgaaatcaaa 129 |||||||||||||||||||| Sbjct: 100866 cagatattcctgaaatcaaa 100847
>gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete sequence Length = 38345 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 acctcgcccagaagcacgcg 156 |||||||||||||||||||| Sbjct: 35587 acctcgcccagaagcacgcg 35606
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 acctcgcccagaagcacgcgctgc 160 |||||| ||||||||||||||||| Sbjct: 127624 acctcgtccagaagcacgcgctgc 127601
>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete sequence Length = 201738 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 accaagggaagagtaatggtggag 57 ||||||||||||||||||| |||| Sbjct: 81460 accaagggaagagtaatgggggag 81483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,729,555 Number of Sequences: 3902068 Number of extensions: 1729555 Number of successful extensions: 30445 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30391 Number of HSP's gapped (non-prelim): 50 length of query: 240 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 218 effective length of database: 17,147,199,772 effective search space: 3738089550296 effective search space used: 3738089550296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)