ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags14d17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469322.1| Oryza sativa (japonica cultivar-group), mRNA 484 e-133
2dbj|AK065067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 484 e-133
3dbj|AK062164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 484 e-133
4gb|AY108250.1| Zea mays PCO096608 mRNA sequence 234 3e-58
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 123 7e-25
6gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 geno... 123 7e-25
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 123 7e-25
8gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E... 123 7e-25
9gb|AY325887.1| Mus musculus highwire (Phr1) mRNA, complete cds 48 0.032
10gb|AE014175.1| Mus musculus piebald deletion region section 3 of... 48 0.032
11gb|AC114410.9| Mus musculus chromosome 14, clone RP23-151K8, com... 48 0.032
12ref|NM_207215.1| Mus musculus pam, highwire, rpm 1 (Phr1), mRNA 48 0.032
13gb|AC162448.10| Mus musculus chromosome 1, clone RP24-405F23, co... 44 0.50
14gb|AC115952.11| Mus musculus chromosome 1, clone RP24-573K10, co... 44 0.50
15gb|AC153907.1| Mus musculus BAC RP23-205F6 (Roswell Park Cancer... 42 2.0
16gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome... 42 2.0
17ref|XM_534151.2| PREDICTED: Canis familiaris similar to pam, hig... 42 2.0
18ref|XM_852853.1| PREDICTED: Canis familiaris similar to pam, hig... 42 2.0
19gb|AC130816.4| Mus musculus BAC clone RP23-52D16 from chromosome... 42 2.0
20dbj|AB218917.1| Octopus vulgaris ov-tm mRNA for tropomyosin, com... 42 2.0
21dbj|AB218915.1| Todarodes pacificus tp-tm mRNA for tropomyosin, ... 42 2.0
22gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 42 2.0
23gb|AF176315.2|AF176315 Homo sapiens chromosome 3 clone RP11-83M1... 42 2.0
24gb|AC008151.1| Homo sapiens 3 BAC CITB-243A6 (California Institu... 42 2.0
25gb|AC068312.5| Homo sapiens chromosome 3 clone RP11-128A5 map 3p... 42 2.0
26gb|AC122931.4| Mus musculus BAC clone RP23-15C15 from 9, complet... 40 7.8
27gb|AC130312.3| Homo sapiens chromosome 11, clone RP11-97G1, comp... 40 7.8
28gb|AC153011.4| Mus musculus BAC clone RP23-316O20 from chromosom... 40 7.8
29emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chrom... 40 7.8
30gb|AC107971.8| Homo sapiens chromosome 11, clone CTD-2307F18, co... 40 7.8
31dbj|AK080053.1| Mus musculus adult male aorta and vein cDNA, RIK... 40 7.8
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
34gb|AC117440.5| Homo sapiens 3 BAC RP11-575C1 (Roswell Park Cance... 40 7.8
35dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
36dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
37gb|CP000201.1| Drosophila melanogaster genomic scaffold 21100002... 40 7.8
38emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chr... 40 7.8
39emb|AL844190.5| Mouse DNA sequence from clone RP23-425H15 on chr... 40 7.8
40gb|L06908.1|GONLUCIFER Gonyaulax polyedra (clones pDL152, pDL200... 40 7.8
41gb|L19073.1|GONLBPC Gonyaulax polyedra luciferin-binding protein... 40 7.8
42gb|L19072.1|GONLBPB Gonyaulax polyedra luciferin-binding protein... 40 7.8
43gb|L19071.1|GONLBPA Gonyaulax polyedra luciferin-binding protein... 40 7.8
44gb|L06909.1|GONGP70A Gonyaulax polyedra (clone pMM7) mRNA sequence 40 7.8 
>ref|XM_469322.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3593

 Score =  484 bits (244), Expect = e-133
 Identities = 463/536 (86%)
 Strand = Plus / Plus

                                                                        
Query: 7    attaacatcagacgatcaatgaacggcaagtcaaagagcgtagtctccaatcagaagaat 66
            ||||||||||||||||||||||  |  || |||||||| |  ||||| | ||||||||||
Sbjct: 2572 attaacatcagacgatcaatgagtgaaaaatcaaagagtgctgtctcgagtcagaagaat 2631

                                                                        
Query: 67   caatttgatggcagtagaaaagaaatcaatgctgctattgaccgggtatgtgaatttaca 126
            |||||||||||||| |||||||||||||||||||| ||||| ||| ||||||| ||||||
Sbjct: 2632 caatttgatggcagcagaaaagaaatcaatgctgcaattgatcggatatgtgagtttaca 2691

                                                                        
Query: 127  gggttaaaggtcatattttgggacctccaacagccattcatcgacaatatgtacaaaaac 186
            ||| ||||||| || || |||||||| || |||||||| || || ||| |||||||||||
Sbjct: 2692 gggctaaaggttatcttctgggacctacagcagccatttattgataatttgtacaaaaac 2751

                                                                        
Query: 187  aatgtttcgcaagctcgattggacactattgtcgaagttcttgatttggtgcttgctcaa 246
            |||||||| ||||||||| ||||  ||||| | ||||| ||||||  |||||||  ||| 
Sbjct: 2752 aatgtttctcaagctcgactggatgctattatggaagtacttgatacggtgcttaatcag 2811

                                                                        
Query: 247  ctctgtgacgtcattgtggagcaactgcgagatcgtgtggttacagggcttctgcaagca 306
            || ||| | ||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 2812 ctttgtaatgtcattgtggagcaactacgggatcgtgtggttacagggcttctacaagca 2871

                                                                        
Query: 307  tccctggatggcttagttcgggtaatactagatggaggtcctacacgcatcttctctcca 366
            || ||||||||| || | || || ||| | |||||||||||||| ||  |||||||||||
Sbjct: 2872 tctctggatggcctactccgtgtgatattggatggaggtcctacgcgtgtcttctctcca 2931

                                                                        
Query: 367  aatgatgcccctcttttggaggaagatcttgaaattcttaaggaattcttcatatctggc 426
            | ||||||| |||||||||| ||||||||||||||||| |||||||| || |||||||| 
Sbjct: 2932 agtgatgccactcttttggaagaagatcttgaaattctgaaggaattttttatatctggt 2991

                                                                        
Query: 427  ggagatgggctgcctcgtggaactgttgagaatttggtctcgcgtgttcgtcctgtaata 486
            |||||||| || |||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 2992 ggagatggcctacctcgtggaactgtcgagaatttggtctcacgtgttcgccctgtaata 3051

                                                                    
Query: 487  aatctgatcaagcaagagacccgtgtgcttattgatgatctgcgcgaagttactca 542
             ||||||||||||||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 3052 gatctgatcaagcaagagacacgtgtgctcatcgatgacctacgagaagttactca 3107
to top
>dbj|AK065067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J22, full
            insert sequence
          Length = 3932

 Score =  484 bits (244), Expect = e-133
 Identities = 463/536 (86%)
 Strand = Plus / Plus

                                                                        
Query: 7    attaacatcagacgatcaatgaacggcaagtcaaagagcgtagtctccaatcagaagaat 66
            ||||||||||||||||||||||  |  || |||||||| |  ||||| | ||||||||||
Sbjct: 2911 attaacatcagacgatcaatgagtgaaaaatcaaagagtgctgtctcgagtcagaagaat 2970

                                                                        
Query: 67   caatttgatggcagtagaaaagaaatcaatgctgctattgaccgggtatgtgaatttaca 126
            |||||||||||||| |||||||||||||||||||| ||||| ||| ||||||| ||||||
Sbjct: 2971 caatttgatggcagcagaaaagaaatcaatgctgcaattgatcggatatgtgagtttaca 3030

                                                                        
Query: 127  gggttaaaggtcatattttgggacctccaacagccattcatcgacaatatgtacaaaaac 186
            ||| ||||||| || || |||||||| || |||||||| || || ||| |||||||||||
Sbjct: 3031 gggctaaaggttatcttctgggacctacagcagccatttattgataatttgtacaaaaac 3090

                                                                        
Query: 187  aatgtttcgcaagctcgattggacactattgtcgaagttcttgatttggtgcttgctcaa 246
            |||||||| ||||||||| ||||  ||||| | ||||| ||||||  |||||||  ||| 
Sbjct: 3091 aatgtttctcaagctcgactggatgctattatggaagtacttgatacggtgcttaatcag 3150

                                                                        
Query: 247  ctctgtgacgtcattgtggagcaactgcgagatcgtgtggttacagggcttctgcaagca 306
            || ||| | ||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 3151 ctttgtaatgtcattgtggagcaactacgggatcgtgtggttacagggcttctacaagca 3210

                                                                        
Query: 307  tccctggatggcttagttcgggtaatactagatggaggtcctacacgcatcttctctcca 366
            || ||||||||| || | || || ||| | |||||||||||||| ||  |||||||||||
Sbjct: 3211 tctctggatggcctactccgtgtgatattggatggaggtcctacgcgtgtcttctctcca 3270

                                                                        
Query: 367  aatgatgcccctcttttggaggaagatcttgaaattcttaaggaattcttcatatctggc 426
            | ||||||| |||||||||| ||||||||||||||||| |||||||| || |||||||| 
Sbjct: 3271 agtgatgccactcttttggaagaagatcttgaaattctgaaggaattttttatatctggt 3330

                                                                        
Query: 427  ggagatgggctgcctcgtggaactgttgagaatttggtctcgcgtgttcgtcctgtaata 486
            |||||||| || |||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 3331 ggagatggcctacctcgtggaactgtcgagaatttggtctcacgtgttcgccctgtaata 3390

                                                                    
Query: 487  aatctgatcaagcaagagacccgtgtgcttattgatgatctgcgcgaagttactca 542
             ||||||||||||||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 3391 gatctgatcaagcaagagacacgtgtgctcatcgatgacctacgagaagttactca 3446
to top
>dbj|AK062164.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B05, full
           insert sequence
          Length = 1175

 Score =  484 bits (244), Expect = e-133
 Identities = 463/536 (86%)
 Strand = Plus / Plus

                                                                       
Query: 7   attaacatcagacgatcaatgaacggcaagtcaaagagcgtagtctccaatcagaagaat 66
           ||||||||||||||||||||||  |  || |||||||| |  ||||| | ||||||||||
Sbjct: 118 attaacatcagacgatcaatgagtgaaaaatcaaagagtgctgtctcgagtcagaagaat 177

                                                                       
Query: 67  caatttgatggcagtagaaaagaaatcaatgctgctattgaccgggtatgtgaatttaca 126
           |||||||||||||| |||||||||||||||||||| ||||| ||| ||||||| ||||||
Sbjct: 178 caatttgatggcagcagaaaagaaatcaatgctgcaattgatcggatatgtgagtttaca 237

                                                                       
Query: 127 gggttaaaggtcatattttgggacctccaacagccattcatcgacaatatgtacaaaaac 186
           ||| ||||||| || || |||||||| || |||||||| || || ||| |||||||||||
Sbjct: 238 gggctaaaggttatcttctgggacctacagcagccatttattgataatttgtacaaaaac 297

                                                                       
Query: 187 aatgtttcgcaagctcgattggacactattgtcgaagttcttgatttggtgcttgctcaa 246
           |||||||| ||||||||| ||||  ||||| | ||||| ||||||  |||||||  ||| 
Sbjct: 298 aatgtttctcaagctcgactggatgctattatggaagtacttgatacggtgcttaatcag 357

                                                                       
Query: 247 ctctgtgacgtcattgtggagcaactgcgagatcgtgtggttacagggcttctgcaagca 306
           || ||| | ||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 358 ctttgtaatgtcattgtggagcaactacgggatcgtgtggttacagggcttctacaagca 417

                                                                       
Query: 307 tccctggatggcttagttcgggtaatactagatggaggtcctacacgcatcttctctcca 366
           || ||||||||| || | || || ||| | |||||||||||||| ||  |||||||||||
Sbjct: 418 tctctggatggcctactccgtgtgatattggatggaggtcctacgcgtgtcttctctcca 477

                                                                       
Query: 367 aatgatgcccctcttttggaggaagatcttgaaattcttaaggaattcttcatatctggc 426
           | ||||||| |||||||||| ||||||||||||||||| |||||||| || |||||||| 
Sbjct: 478 agtgatgccactcttttggaagaagatcttgaaattctgaaggaattttttatatctggt 537

                                                                       
Query: 427 ggagatgggctgcctcgtggaactgttgagaatttggtctcgcgtgttcgtcctgtaata 486
           |||||||| || |||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 538 ggagatggcctacctcgtggaactgtcgagaatttggtctcacgtgttcgccctgtaata 597

                                                                   
Query: 487 aatctgatcaagcaagagacccgtgtgcttattgatgatctgcgcgaagttactca 542
            ||||||||||||||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 598 gatctgatcaagcaagagacacgtgtgctcatcgatgacctacgagaagttactca 653
to top
>gb|AY108250.1| Zea mays PCO096608 mRNA sequence
          Length = 513

 Score =  234 bits (118), Expect = 3e-58
 Identities = 202/230 (87%)
 Strand = Plus / Plus

                                                                       
Query: 331 atactagatggaggtcctacacgcatcttctctccaaatgatgcccctcttttggaggaa 390
           ||||| ||||||||| |||||||  |||||||||||||||||||  || | |||||||||
Sbjct: 63  atactggatggaggttctacacgtgtcttctctccaaatgatgcagctttattggaggaa 122

                                                                       
Query: 391 gatcttgaaattcttaaggaattcttcatatctggcggagatgggctgcctcgtggaact 450
           ||||||||||  || |||||||| ||  | ||||| |||||||| |||||||||||||||
Sbjct: 123 gatcttgaaaccctgaaggaattttttgtttctggtggagatggactgcctcgtggaact 182

                                                                       
Query: 451 gttgagaatttggtctcgcgtgttcgtcctgtaataaatctgatcaagcaagagacccgt 510
           ||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 183 gttgaaaacttagtctcgcgtgtacgtcctgtaataaatctgatcaagcaagagacccgc 242

                                                             
Query: 511 gtgcttattgatgatctgcgcgaagttactcaaggaggcaaaagcaaatt 560
           ||||| |||||||| || || |||||||||||||| ||||| ||||||||
Sbjct: 243 gtgctcattgatgacctacgagaagttactcaaggtggcaagagcaaatt 292
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  123 bits (62), Expect = 7e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                            
Query: 407      aggaattcttcatatctggcggagatgggctgcctcgtggaactgttgagaatttggtct 466
                ||||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 26957302 aggaattttttatatctggtggagatggcctacctcgtggaactgtcgagaatttggtct 26957361

                                                      
Query: 467      cgcgtgttcgtcctgtaataaatctgatcaagcaagag 504
                | |||||||| ||||||||| |||||||||||||||||
Sbjct: 26957362 cacgtgttcgccctgtaatagatctgatcaagcaagag 26957399



 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                            
Query: 57       tcagaagaatcaatttgatggcagtagaaaagaaatcaatgctgctattgaccgggtatg 116
                |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||
Sbjct: 26956243 tcagaagaatcaatttgatggcagcagaaaagaaatcaatgctgcaattgatcggatatg 26956302

                            
Query: 117      tgaatttacagg 128
                ||| ||||||||
Sbjct: 26956303 tgagtttacagg 26956314



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                            
Query: 337      gatggaggtcctacacgcatcttctctccaaatgatgcccctcttttggaggaagatctt 396
                |||||||||||||| ||  |||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 26957058 gatggaggtcctacgcgtgtcttctctccaagtgatgccactcttttggaagaagatctt 26957117

                             
Query: 397      gaaattcttaagg 409
                |||||||| ||||
Sbjct: 26957118 gaaattctgaagg 26957130



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 256      gtcattgtggagcaactgcgagatcgtgtggttacagggcttctgcaagcatccctgg 313
                ||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 26956892 gtcattgtggagcaactacgggatcgtgtggttacagggcttctacaagcatctctgg 26956949



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Plus

                                                                            
Query: 126      agggttaaaggtcatattttgggacctccaacagccattcatcgacaatatgtacaaaaa 185
                |||| ||||||| || || |||||||| || |||||||| || || ||| ||||||||||
Sbjct: 26956390 agggctaaaggttatcttctgggacctacagcagccatttattgataatttgtacaaaaa 26956449

                                                              
Query: 186      caatgtttcgcaagctcgattggacactattgtcgaagttcttgat 231
                ||||||||| ||||||||| ||||  ||||| | ||||| ||||||
Sbjct: 26956450 caatgtttctcaagctcgactggatgctattatggaagtacttgat 26956495
to top
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete
              sequence
          Length = 149303

 Score =  123 bits (62), Expect = 7e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                          
Query: 407    aggaattcttcatatctggcggagatgggctgcctcgtggaactgttgagaatttggtct 466
              ||||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 136302 aggaattttttatatctggtggagatggcctacctcgtggaactgtcgagaatttggtct 136361

                                                    
Query: 467    cgcgtgttcgtcctgtaataaatctgatcaagcaagag 504
              | |||||||| ||||||||| |||||||||||||||||
Sbjct: 136362 cacgtgttcgccctgtaatagatctgatcaagcaagag 136399



 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                          
Query: 57     tcagaagaatcaatttgatggcagtagaaaagaaatcaatgctgctattgaccgggtatg 116
              |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||
Sbjct: 135243 tcagaagaatcaatttgatggcagcagaaaagaaatcaatgctgcaattgatcggatatg 135302

                          
Query: 117    tgaatttacagg 128
              ||| ||||||||
Sbjct: 135303 tgagtttacagg 135314



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                          
Query: 337    gatggaggtcctacacgcatcttctctccaaatgatgcccctcttttggaggaagatctt 396
              |||||||||||||| ||  |||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 136058 gatggaggtcctacgcgtgtcttctctccaagtgatgccactcttttggaagaagatctt 136117

                           
Query: 397    gaaattcttaagg 409
              |||||||| ||||
Sbjct: 136118 gaaattctgaagg 136130



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                        
Query: 256    gtcattgtggagcaactgcgagatcgtgtggttacagggcttctgcaagcatccctgg 313
              ||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 135892 gtcattgtggagcaactacgggatcgtgtggttacagggcttctacaagcatctctgg 135949



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Plus

                                                                          
Query: 126    agggttaaaggtcatattttgggacctccaacagccattcatcgacaatatgtacaaaaa 185
              |||| ||||||| || || |||||||| || |||||||| || || ||| ||||||||||
Sbjct: 135390 agggctaaaggttatcttctgggacctacagcagccatttattgataatttgtacaaaaa 135449

                                                            
Query: 186    caatgtttcgcaagctcgattggacactattgtcgaagttcttgat 231
              ||||||||| ||||||||| ||||  ||||| | ||||| ||||||
Sbjct: 135450 caatgtttctcaagctcgactggatgctattatggaagtacttgat 135495
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  123 bits (62), Expect = 7e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                            
Query: 407      aggaattcttcatatctggcggagatgggctgcctcgtggaactgttgagaatttggtct 466
                ||||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 27048625 aggaattttttatatctggtggagatggcctacctcgtggaactgtcgagaatttggtct 27048684

                                                      
Query: 467      cgcgtgttcgtcctgtaataaatctgatcaagcaagag 504
                | |||||||| ||||||||| |||||||||||||||||
Sbjct: 27048685 cacgtgttcgccctgtaatagatctgatcaagcaagag 27048722



 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                            
Query: 57       tcagaagaatcaatttgatggcagtagaaaagaaatcaatgctgctattgaccgggtatg 116
                |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||
Sbjct: 27047566 tcagaagaatcaatttgatggcagcagaaaagaaatcaatgctgcaattgatcggatatg 27047625

                            
Query: 117      tgaatttacagg 128
                ||| ||||||||
Sbjct: 27047626 tgagtttacagg 27047637



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                            
Query: 337      gatggaggtcctacacgcatcttctctccaaatgatgcccctcttttggaggaagatctt 396
                |||||||||||||| ||  |||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 27048381 gatggaggtcctacgcgtgtcttctctccaagtgatgccactcttttggaagaagatctt 27048440

                             
Query: 397      gaaattcttaagg 409
                |||||||| ||||
Sbjct: 27048441 gaaattctgaagg 27048453



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 256      gtcattgtggagcaactgcgagatcgtgtggttacagggcttctgcaagcatccctgg 313
                ||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 27048215 gtcattgtggagcaactacgggatcgtgtggttacagggcttctacaagcatctctgg 27048272



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Plus

                                                                            
Query: 126      agggttaaaggtcatattttgggacctccaacagccattcatcgacaatatgtacaaaaa 185
                |||| ||||||| || || |||||||| || |||||||| || || ||| ||||||||||
Sbjct: 27047713 agggctaaaggttatcttctgggacctacagcagccatttattgataatttgtacaaaaa 27047772

                                                              
Query: 186      caatgtttcgcaagctcgattggacactattgtcgaagttcttgat 231
                ||||||||| ||||||||| ||||  ||||| | ||||| ||||||
Sbjct: 27047773 caatgtttctcaagctcgactggatgctattatggaagtacttgat 27047818
to top
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete
              sequence
          Length = 111882

 Score =  123 bits (62), Expect = 7e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                          
Query: 407    aggaattcttcatatctggcggagatgggctgcctcgtggaactgttgagaatttggtct 466
              ||||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 102097 aggaattttttatatctggtggagatggcctacctcgtggaactgtcgagaatttggtct 102038

                                                    
Query: 467    cgcgtgttcgtcctgtaataaatctgatcaagcaagag 504
              | |||||||| ||||||||| |||||||||||||||||
Sbjct: 102037 cacgtgttcgccctgtaatagatctgatcaagcaagag 102000



 Score =  103 bits (52), Expect = 6e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                          
Query: 57     tcagaagaatcaatttgatggcagtagaaaagaaatcaatgctgctattgaccgggtatg 116
              |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||
Sbjct: 103156 tcagaagaatcaatttgatggcagcagaaaagaaatcaatgctgcaattgatcggatatg 103097

                          
Query: 117    tgaatttacagg 128
              ||| ||||||||
Sbjct: 103096 tgagtttacagg 103085



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                          
Query: 337    gatggaggtcctacacgcatcttctctccaaatgatgcccctcttttggaggaagatctt 396
              |||||||||||||| ||  |||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 102341 gatggaggtcctacgcgtgtcttctctccaagtgatgccactcttttggaagaagatctt 102282

                           
Query: 397    gaaattcttaagg 409
              |||||||| ||||
Sbjct: 102281 gaaattctgaagg 102269



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                        
Query: 256    gtcattgtggagcaactgcgagatcgtgtggttacagggcttctgcaagcatccctgg 313
              ||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 102507 gtcattgtggagcaactacgggatcgtgtggttacagggcttctacaagcatctctgg 102450



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 89/106 (83%)
 Strand = Plus / Minus

                                                                          
Query: 126    agggttaaaggtcatattttgggacctccaacagccattcatcgacaatatgtacaaaaa 185
              |||| ||||||| || || |||||||| || |||||||| || || ||| ||||||||||
Sbjct: 103009 agggctaaaggttatcttctgggacctacagcagccatttattgataatttgtacaaaaa 102950

                                                            
Query: 186    caatgtttcgcaagctcgattggacactattgtcgaagttcttgat 231
              ||||||||| ||||||||| ||||  ||||| | ||||| ||||||
Sbjct: 102949 caatgtttctcaagctcgactggatgctattatggaagtacttgat 102904
to top
>gb|AY325887.1| Mus musculus highwire (Phr1) mRNA, complete cds
          Length = 14498

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 382  ttggaggaagatcttgaaattctt 405
            ||||||||||||||||||||||||
Sbjct: 6478 ttggaggaagatcttgaaattctt 6501
to top
>gb|AE014175.1| Mus musculus piebald deletion region section 3 of 11 of the complete
              sequence
          Length = 404829

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 382    ttggaggaagatcttgaaattctt 405
              ||||||||||||||||||||||||
Sbjct: 191176 ttggaggaagatcttgaaattctt 191153
to top
>gb|AC114410.9| Mus musculus chromosome 14, clone RP23-151K8, complete sequence
          Length = 201783

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 382   ttggaggaagatcttgaaattctt 405
             ||||||||||||||||||||||||
Sbjct: 63108 ttggaggaagatcttgaaattctt 63085
to top
>ref|NM_207215.1| Mus musculus pam, highwire, rpm 1 (Phr1), mRNA
          Length = 14498

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 382  ttggaggaagatcttgaaattctt 405
            ||||||||||||||||||||||||
Sbjct: 6478 ttggaggaagatcttgaaattctt 6501
to top
>gb|AC162448.10| Mus musculus chromosome 1, clone RP24-405F23, complete sequence
          Length = 180366

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 386    aggaagatcttgaaattcttaa 407
              ||||||||||||||||||||||
Sbjct: 148792 aggaagatcttgaaattcttaa 148813
to top
>gb|AC115952.11| Mus musculus chromosome 1, clone RP24-573K10, complete sequence
          Length = 182780

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 386   aggaagatcttgaaattcttaa 407
             ||||||||||||||||||||||
Sbjct: 23678 aggaagatcttgaaattcttaa 23699
to top
>gb|AC153907.1| Mus musculus  BAC RP23-205F6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 196286

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    tgatggcagtagaaaagaaat 92
             |||||||||||||||||||||
Sbjct: 45531 tgatggcagtagaaaagaaat 45551
to top
>gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome 6, complete sequence
          Length = 239653

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     tgatggcagtagaaaagaaat 92
              |||||||||||||||||||||
Sbjct: 235475 tgatggcagtagaaaagaaat 235495
to top
>ref|XM_534151.2| PREDICTED: Canis familiaris similar to pam, highwire, rpm 1,
            transcript variant 1 (LOC476952), mRNA
          Length = 14858

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 385  gaggaagatcttgaaattctt 405
            |||||||||||||||||||||
Sbjct: 6445 gaggaagatcttgaaattctt 6465
to top
>ref|XM_852853.1| PREDICTED: Canis familiaris similar to pam, highwire, rpm 1,
            transcript variant 2 (LOC476952), mRNA
          Length = 14639

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 385  gaggaagatcttgaaattctt 405
            |||||||||||||||||||||
Sbjct: 6445 gaggaagatcttgaaattctt 6465
to top
>gb|AC130816.4| Mus musculus BAC clone RP23-52D16 from chromosome 6, complete sequence
          Length = 111111

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    tgatggcagtagaaaagaaat 92
             |||||||||||||||||||||
Sbjct: 33213 tgatggcagtagaaaagaaat 33193
to top
>dbj|AB218917.1| Octopus vulgaris ov-tm mRNA for tropomyosin, complete cds
          Length = 1172

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 379 cttttggaggaagatcttgaa 399
           |||||||||||||||||||||
Sbjct: 381 cttttggaggaagatcttgaa 401
to top
>dbj|AB218915.1| Todarodes pacificus tp-tm mRNA for tropomyosin, complete cds
          Length = 1271

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 379 cttttggaggaagatcttgaa 399
           |||||||||||||||||||||
Sbjct: 469 cttttggaggaagatcttgaa 489
to top
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 414     cttcatatctggcggagatgg 434
               |||||||||||||||||||||
Sbjct: 1224518 cttcatatctggcggagatgg 1224498
to top
>gb|AF176315.2|AF176315 Homo sapiens chromosome 3 clone RP11-83M12 map 3p, complete sequence
          Length = 170755

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 298   ctgcaagcatccctggatggc 318
             |||||||||||||||||||||
Sbjct: 36056 ctgcaagcatccctggatggc 36036
to top
>gb|AC008151.1| Homo sapiens 3 BAC CITB-243A6 (California Institute of Technology BAC
             Library) complete sequence
          Length = 178242

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   ctgcaagcatccctggatggc 318
             |||||||||||||||||||||
Sbjct: 39227 ctgcaagcatccctggatggc 39247
to top
>gb|AC068312.5| Homo sapiens chromosome 3 clone RP11-128A5 map 3p, complete sequence
          Length = 170350

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   ctgcaagcatccctggatggc 318
             |||||||||||||||||||||
Sbjct: 94077 ctgcaagcatccctggatggc 94097
to top
>gb|AC122931.4| Mus musculus BAC clone RP23-15C15 from 9, complete sequence
          Length = 192274

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 81   tagaaaagaaatcaatgctgctat 104
            ||||||||||||||||| ||||||
Sbjct: 7237 tagaaaagaaatcaatgatgctat 7260
to top
>gb|AC130312.3| Homo sapiens chromosome 11, clone RP11-97G1, complete sequence
          Length = 161367

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    atgtacaaaaacaatgtttc 194
              ||||||||||||||||||||
Sbjct: 150572 atgtacaaaaacaatgtttc 150553
to top
>gb|AC153011.4| Mus musculus BAC clone RP23-316O20 from chromosome 9, complete sequence
          Length = 190332

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    tagaaaagaaatcaatgctgctat 104
             ||||||||||||||||| ||||||
Sbjct: 94305 tagaaaagaaatcaatgatgctat 94328
to top
>emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chromosome 4, complete
              sequence
          Length = 149318

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 392    atcttgaaattcttaaggaattct 415
              ||||||||||||||||| ||||||
Sbjct: 110358 atcttgaaattcttaagaaattct 110381
to top
>gb|AC107971.8| Homo sapiens chromosome 11, clone CTD-2307F18, complete sequence
          Length = 119883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   atgtacaaaaacaatgtttc 194
             ||||||||||||||||||||
Sbjct: 68691 atgtacaaaaacaatgtttc 68710
to top
>dbj|AK080053.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530053H09
            product:unclassifiable, full insert sequence
          Length = 3202

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  actcaaggaggcaaaagcaa 557
            ||||||||||||||||||||
Sbjct: 1021 actcaaggaggcaaaagcaa 1002
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 68       aatttgatggcagtagaaaa 87
                ||||||||||||||||||||
Sbjct: 11026528 aatttgatggcagtagaaaa 11026547
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 540      tcaaggaggcaaaagcaaat 559
                ||||||||||||||||||||
Sbjct: 23608495 tcaaggaggcaaaagcaaat 23608476
to top
>gb|AC117440.5| Homo sapiens 3 BAC RP11-575C1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 199386

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   acaatatgtacaaaaacaat 189
             ||||||||||||||||||||
Sbjct: 28774 acaatatgtacaaaaacaat 28755
to top
>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0501G08
          Length = 173505

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     aatttgatggcagtagaaaa 87
              ||||||||||||||||||||
Sbjct: 110610 aatttgatggcagtagaaaa 110629
to top
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1669_F01
          Length = 140019

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 540   tcaaggaggcaaaagcaaat 559
             ||||||||||||||||||||
Sbjct: 49595 tcaaggaggcaaaagcaaat 49576
to top
>gb|CP000201.1| Drosophila melanogaster genomic scaffold 211000022280746
          Length = 237751

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     ccaatcagaagaatcaatttgatg 76
              |||||||||| |||||||||||||
Sbjct: 205330 ccaatcagaaaaatcaatttgatg 205353
to top
>emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete
             sequence
          Length = 103129

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   actcaaggaggcaaaagcaa 557
             ||||||||||||||||||||
Sbjct: 52400 actcaaggaggcaaaagcaa 52419
to top
>emb|AL844190.5| Mouse DNA sequence from clone RP23-425H15 on chromosome 4, complete
             sequence
          Length = 211151

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 68    aatttgatggcagtagaaaagaaatcaa 95
             ||||||||| ||||| ||||||||||||
Sbjct: 41444 aatttgatgacagtacaaaagaaatcaa 41417
to top
>gb|L06908.1|GONLUCIFER Gonyaulax polyedra (clones pDL152, pDL200, pDL708, pDL190, pDLC16,
            1.1 LBP, pDL650, pDL696-22 and pDL691-24) luciferin
            binding protein gene, complete cds
          Length = 2544

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tcaactctgtgacgtcattg 262
            ||||||||||||||||||||
Sbjct: 2138 tcaactctgtgacgtcattg 2157
to top
>gb|L19073.1|GONLBPC Gonyaulax polyedra luciferin-binding protein mRNA, complete cds
          Length = 2187

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tcaactctgtgacgtcattg 262
            ||||||||||||||||||||
Sbjct: 2003 tcaactctgtgacgtcattg 2022
to top
>gb|L19072.1|GONLBPB Gonyaulax polyedra luciferin-binding protein mRNA, complete cds
          Length = 2208

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tcaactctgtgacgtcattg 262
            ||||||||||||||||||||
Sbjct: 2015 tcaactctgtgacgtcattg 2034
to top
>gb|L19071.1|GONLBPA Gonyaulax polyedra luciferin-binding protein mRNA, complete cds
          Length = 2217

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  tcaactctgtgacgtcattg 262
            ||||||||||||||||||||
Sbjct: 2024 tcaactctgtgacgtcattg 2043
to top
>gb|L06909.1|GONGP70A Gonyaulax polyedra (clone pMM7) mRNA sequence
          Length = 671

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 243 tcaactctgtgacgtcattg 262
           ||||||||||||||||||||
Sbjct: 485 tcaactctgtgacgtcattg 504


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,184,285
Number of Sequences: 3902068
Number of extensions: 5184285
Number of successful extensions: 93871
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93647
Number of HSP's gapped (non-prelim): 221
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top