ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9k07 |
|---|---|
| Clone Library Name | barley_pub |
>SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like 1 protein| (SMC1alpha protein) (Chromosome segregation protein SmcB) (Sb1.8) Length = 1233 Score = 32.0 bits (71), Expect = 1.6 Identities = 26/122 (21%), Positives = 51/122 (41%) Frame = -3 Query: 626 VSIMKLSKEFVEIEQKLSTEKTEKRSEDLTDHCSHMVKQAVVLTKVGLWYKQMLETRRSE 447 V I KL+KE +++ EK +KR + + D K+ + + ++ ++ + SE Sbjct: 233 VEIEKLNKELASKNKEI--EKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSE 290 Query: 446 LQKAEAKVVILGDKVNTHLSLLEKIYVTLDHYSPTLQKYPGLLDAFLKTCKLVAGLRSRH 267 L + + + + + + LE +L H +K G +D K V R Sbjct: 291 LNQKRPQYIKAKENTSHKIKKLEAAKKSLQHAQKHYKKRKGDMDELEKEMLSVEKARQEF 350 Query: 266 DE 261 +E Sbjct: 351 EE 352
>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)| Length = 298 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = +3 Query: 330 VFLQCRRVVIKSYIYLFEKAQMCINLVPQNDNLGFSLLELRAPCFEHLFVP 482 +FL C +V S +Y+F +C+ L+ L SLL L PCF LF+P Sbjct: 4 LFLPC--IVSNSLVYIFLHCFVCLCLLV----LSNSLLHLFLPCFVCLFLP 48
>ANGP2_BOVIN (O77802) Angiopoietin-2 (ANG-2) (Fragment)| Length = 375 Score = 31.2 bits (69), Expect = 2.7 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Frame = -3 Query: 590 IEQKLSTEKTEKRSEDLTDHCSHMVKQAVVLTK--VGLWYKQMLETRRSELQKAEAKVVI 417 +E LST K EK+ D T S + + L K + + K +++ R + +K + +V++ Sbjct: 41 LEHSLSTNKLEKQILDQTSEISKLQDKNSFLEKKVLDMEDKHIVQLRSIKEEKDQLQVLV 100 Query: 416 LGDKVNTHLSLLEKIYVTLDHYSPTLQK 333 K N+ + LEK VT + LQK Sbjct: 101 --SKQNSIIEELEKQLVTATVNNSVLQK 126
>MYO1_YEAST (P08964) Myosin-1 (Type II myosin)| Length = 1928 Score = 30.8 bits (68), Expect = 3.5 Identities = 26/102 (25%), Positives = 44/102 (43%) Frame = -3 Query: 641 LECILVSIMKLSKEFVEIEQKLSTEKTEKRSEDLTDHCSHMVKQAVVLTKVGLWYKQMLE 462 L C L + L KEF ++ KL T + ++ S ++KQ TKV +ML Sbjct: 1596 LNCSLKAETNLKKEFATLKYKLETSTNDSEAK-----ISDLLKQLDHYTKV----VEMLN 1646 Query: 461 TRRSELQKAEAKVVILGDKVNTHLSLLEKIYVTLDHYSPTLQ 336 + + AE ++ + +NT L+ V+L L+ Sbjct: 1647 NEKDAISLAEKELYQKYEALNTECESLKGKIVSLTKIKQELE 1688
>ANGP2_PIG (Q9BDY7) Angiopoietin-2 precursor (ANG-2)| Length = 496 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/86 (26%), Positives = 40/86 (46%) Frame = -3 Query: 590 IEQKLSTEKTEKRSEDLTDHCSHMVKQAVVLTKVGLWYKQMLETRRSELQKAEAKVVILG 411 +E LST K EK+ D T + + + L K L + + +++ + ++ +L Sbjct: 161 LEHSLSTNKLEKQILDQTSEINKLQDKNSFLEKKVLDMEDKHIVQLQSIKEEKDQLQVLV 220 Query: 410 DKVNTHLSLLEKIYVTLDHYSPTLQK 333 K N+ + LEK VT + LQK Sbjct: 221 SKQNSIIEELEKQLVTATVNNSVLQK 246
>ANGP2_HUMAN (O15123) Angiopoietin-2 precursor (ANG-2)| Length = 496 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/86 (26%), Positives = 40/86 (46%) Frame = -3 Query: 590 IEQKLSTEKTEKRSEDLTDHCSHMVKQAVVLTKVGLWYKQMLETRRSELQKAEAKVVILG 411 +E LST K EK+ D T + + + L K L + + +++ + ++ +L Sbjct: 161 LEHSLSTNKLEKQILDQTSEINKLQDKNSFLEKKVLAMEDKHIIQLQSIKEEKDQLQVLV 220 Query: 410 DKVNTHLSLLEKIYVTLDHYSPTLQK 333 K N+ + LEK VT + LQK Sbjct: 221 SKQNSIIEELEKKIVTATVNNSVLQK 246
>YFD4_YEAST (P43564) Hypothetical 119.5 kDa protein in MOB2-RIM15 intergenic| region Length = 1073 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = -3 Query: 626 VSIMKLSKEFVEIEQKLSTEKTEKRSEDLTDHCSHMVKQAVVLTKVGLWYKQMLETRRSE 447 + I LS+EFVEIE+ ++ E+ KR L + K+ K W + L+ ++S+ Sbjct: 872 IGIAVLSEEFVEIEEMMNPEEV-KRKRKLINDVDAAQKKLSERKKHNSWVPKWLKPKKSK 930
>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3009 Score = 29.6 bits (65), Expect = 7.9 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 425 PWLQPFGAQSALFRAFVCTRGL 490 P L PFG +FRA VCTRG+ Sbjct: 1167 PLLCPFGHAVGIFRAAVCTRGV 1188
>GLMS_BARQU (Q6FZH6) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 606 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/69 (30%), Positives = 37/69 (53%) Frame = -3 Query: 605 KEFVEIEQKLSTEKTEKRSEDLTDHCSHMVKQAVVLTKVGLWYKQMLETRRSELQKAEAK 426 + FVE++++L E +E T+ +H++ +A+ K GL ++ + T LQ A A Sbjct: 101 ENFVELQKELIEEGYTFETETDTEVIAHLITRAL---KSGLSQQEAIRTSWKRLQGAFAI 157 Query: 425 VVILGDKVN 399 VVI + N Sbjct: 158 VVIFEGQDN 166
>MUTS_STRPM (Q48QT6) DNA mismatch repair protein mutS| Length = 851 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 455 RSELQKAEAKVVILG-DKVNTHLSLLEKIYVTLDHYSPTLQKYPGLLDAFLKTCKLVA 285 RSE+Q +AK V+LG D ++L K L Y T+ + L+D L T +L A Sbjct: 162 RSEIQNLKAKEVLLGFDLSEEEQTILVKQMNLLLSYEETVYEDKSLIDGQLTTVELTA 219
>MUTS_STRP8 (Q8NZ24) DNA mismatch repair protein mutS| Length = 851 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 455 RSELQKAEAKVVILG-DKVNTHLSLLEKIYVTLDHYSPTLQKYPGLLDAFLKTCKLVA 285 RSE+Q +AK V+LG D ++L K L Y T+ + L+D L T +L A Sbjct: 162 RSEIQNLKAKEVLLGFDLSEEEQTILVKQMNLLLSYEETVYEDKSLIDGQLTTVELTA 219
>MUTS_STRP6 (Q5X9F3) DNA mismatch repair protein mutS| Length = 851 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 455 RSELQKAEAKVVILG-DKVNTHLSLLEKIYVTLDHYSPTLQKYPGLLDAFLKTCKLVA 285 RSE+Q +AK V+LG D ++L K L Y T+ + L+D L T +L A Sbjct: 162 RSEIQNLKAKEVLLGFDLSEEEQTILVKQMNLLLSYEETVYEDKSLIDGQLTTVELTA 219
>MUTS_STRP3 (Q8K5J5) DNA mismatch repair protein mutS| Length = 851 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 455 RSELQKAEAKVVILG-DKVNTHLSLLEKIYVTLDHYSPTLQKYPGLLDAFLKTCKLVA 285 RSE+Q +AK V+LG D ++L K L Y T+ + L+D L T +L A Sbjct: 162 RSEIQNLKAKEVLLGFDLSEEEQTILVKQMNLLLSYEETVYEDKSLIDGQLTTVELTA 219
>MUTS_STRP1 (Q99XL8) DNA mismatch repair protein mutS| Length = 851 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -3 Query: 455 RSELQKAEAKVVILG-DKVNTHLSLLEKIYVTLDHYSPTLQKYPGLLDAFLKTCKLVA 285 RSE+Q +AK V+LG D ++L K L Y T+ + L+D L T +L A Sbjct: 162 RSEIQNLKAKEVLLGFDLSEEEQTILVKQMNLLLSYEETVYEDKSLIDGQLTTVELTA 219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,449,956 Number of Sequences: 219361 Number of extensions: 1791468 Number of successful extensions: 4338 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4208 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4338 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
