ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags14c15 |
|---|---|
| Clone Library Name | barley_pub |
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 207 bits (527), Expect = 2e-53 Identities = 107/191 (56%), Positives = 129/191 (67%), Gaps = 1/191 (0%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 +SS + + R+LYVGNIPR + NDEL + HG + AEVMYDKYSGRSRRFGF Sbjct: 70 SSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGF 129 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPS-FVDSQYKVYVG 397 VTM T E+ A IE LNDTE+GGRKIKVN+TE L +D + ++E S FV+S YKVY+G Sbjct: 130 VTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIG 189 Query: 398 NLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTE 577 NLAK VT E+LK+FFSEKG+VL A V R PGT KS G+G NN+ Sbjct: 190 NLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSV 249 Query: 578 LEGQTIRVNRA 610 LEGQ IRVN+A Sbjct: 250 LEGQKIRVNKA 260
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 117 bits (293), Expect = 3e-26 Identities = 66/187 (35%), Positives = 105/187 (56%), Gaps = 6/187 (3%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 E + +LYVGN+P ++T+ +LS +FA GTV E++YD+ + RSR F FVTM + EE Sbjct: 109 ESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEA 168 Query: 248 AAAIESLNDTEVGGRKIKVNVTESFLPN------IDASAPESEPSFVDSQYKVYVGNLAK 409 AI + ++VGGR +KVN E +P + A + FVDS +K+YV NL+ Sbjct: 169 KEAIRLFDGSQVGGRTVKVNFPE--VPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226 Query: 410 KVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQ 589 +T++ L++ F+++ +SA V + +S+G+G N ELEG+ Sbjct: 227 ALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 286 Query: 590 TIRVNRA 610 +R+N A Sbjct: 287 PLRLNVA 293 Score = 69.7 bits (169), Expect = 7e-12 Identities = 35/92 (38%), Positives = 56/92 (60%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KLYV N+ +T+ L FA + A+V+YD+ SGRSR FGF+T S+AE + +A+++ Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEP 361 +N+ E+ GR +++NV P E+ P Sbjct: 278 MNEVELEGRPLRLNVAGQKAPVSSPPVVETSP 309
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 113 bits (283), Expect = 4e-25 Identities = 76/207 (36%), Positives = 103/207 (49%), Gaps = 21/207 (10%) Frame = +2 Query: 53 VMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMS 232 V E P KL+VGN+P +V + L+ +F G V EV+YDK SGRSR FGFVTMS Sbjct: 78 VAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMS 137 Query: 233 TAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDAS-------------APESEPSF-- 367 T EEV AA + N E+ GR I+VN + ++S + SF Sbjct: 138 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGG 197 Query: 368 ------VDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 529 VDS +VYVGNL+ V LK FSE+G V+ A V + +S+G+G Sbjct: 198 ARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYS 257 Query: 530 XXXXXXXXXXXXNNTELEGQTIRVNRA 610 N +L+G++IRV+ A Sbjct: 258 SAKEVNDAIDSLNGIDLDGRSIRVSAA 284 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/80 (47%), Positives = 56/80 (70%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 ++ ++YVGN+ V + L +F+ G VV A+V+YD+ SGRSR FGFVT S+A+EV A Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 265 Query: 257 IESLNDTEVGGRKIKVNVTE 316 I+SLN ++ GR I+V+ E Sbjct: 266 IDSLNGIDLDGRSIRVSAAE 285
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 113 bits (283), Expect = 4e-25 Identities = 75/207 (36%), Positives = 103/207 (49%), Gaps = 21/207 (10%) Frame = +2 Query: 53 VMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMS 232 V E P KL+VGN+P +V + L+ +F G V EV+YDK +GRSR FGFVTMS Sbjct: 77 VAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMS 136 Query: 233 TAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDAS-------------APESEPSF-- 367 T EEV AA + N E+ GR I+VN + ++S + SF Sbjct: 137 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGG 196 Query: 368 ------VDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXX 529 VDS +VYVGNL+ V LK FSE+G V+ A V + +S+G+G Sbjct: 197 ARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYS 256 Query: 530 XXXXXXXXXXXXNNTELEGQTIRVNRA 610 N +L+G++IRV+ A Sbjct: 257 SSKEVNDAIDSLNGVDLDGRSIRVSAA 283 Score = 73.9 bits (180), Expect = 4e-13 Identities = 37/80 (46%), Positives = 56/80 (70%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 ++ ++YVGN+ V + L +F+ G VV A+V+YD+ SGRSR FGFVT S+++EV A Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDA 264 Query: 257 IESLNDTEVGGRKIKVNVTE 316 I+SLN ++ GR I+V+ E Sbjct: 265 IDSLNGVDLDGRSIRVSAAE 284
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 112 bits (280), Expect = 1e-24 Identities = 71/185 (38%), Positives = 100/185 (54%), Gaps = 1/185 (0%) Frame = +2 Query: 59 EAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTA 238 E PEE KL+VGN+P V +++L+ +F A G V AEV+Y++ + RSR FGFVTMST Sbjct: 50 EPPEEA---KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTV 106 Query: 239 EEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEP-SFVDSQYKVYVGNLAKKV 415 EE A+E LN ++ GR++ VN +PE P + +VYVGNL V Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVNKA------APRGSPERAPRGDFEPSCRVYVGNLPWDV 160 Query: 416 TTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTI 595 T L+ FSE G+V+SA V T +S+G+G + L+G+ + Sbjct: 161 DTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAV 220 Query: 596 RVNRA 610 RVN A Sbjct: 221 RVNVA 225 Score = 74.7 bits (182), Expect = 2e-13 Identities = 37/77 (48%), Positives = 51/77 (66%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++YVGN+P V L +F+ HG VV A V+ D+ +GRSR FGFVTMS+ EV AI + Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209 Query: 266 LNDTEVGGRKIKVNVTE 316 L+ + GR ++VNV E Sbjct: 210 LDGQTLDGRAVRVNVAE 226
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 110 bits (275), Expect = 4e-24 Identities = 67/184 (36%), Positives = 96/184 (52%) Frame = +2 Query: 59 EAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTA 238 E PE+ KL+VGN+P V ++ L+ +F G V AEV+Y++ + +SR FGFVTMST Sbjct: 131 EPPEDA---KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTV 187 Query: 239 EEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVT 418 EE A+E N +V GR + VN PE P + Y++YVGN+ + Sbjct: 188 EEAEKAVEMYNRYDVNGRLLTVNKAAR-----RGERPERPPRTFEQSYRIYVGNIPWGID 242 Query: 419 TEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIR 598 L+ FSE G+V+SA V T +S+G+G + L+G+TIR Sbjct: 243 DARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIR 302 Query: 599 VNRA 610 VN A Sbjct: 303 VNVA 306 Score = 77.4 bits (189), Expect = 3e-14 Identities = 37/77 (48%), Positives = 54/77 (70%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++YVGNIP + + L +F+ HG VV A V+YD+ +GRSR FGFVTM++ E++ AI + Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 266 LNDTEVGGRKIKVNVTE 316 L+ + GR I+VNV E Sbjct: 291 LDGQSLDGRTIRVNVAE 307 Score = 39.3 bits (90), Expect = 0.010 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Frame = +2 Query: 335 DASAPESEPSFVD--SQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 508 + A E E F + K++VGNL V +E L F + G V A V T +S+G Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178 Query: 509 YGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 +G N ++ G+ + VN+A Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKA 212
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 108 bits (269), Expect = 2e-23 Identities = 68/190 (35%), Positives = 95/190 (50%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 A S E PE KL+VGN+ V + L+ +F GTV AEV+Y++ + +SR FGF Sbjct: 136 AVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGF 195 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGN 400 VTMS+ +E A+E N ++ GR + VN S PE P + ++VYVGN Sbjct: 196 VTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP-----RGSRPERAPRVYEPAFRVYVGN 250 Query: 401 LAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTEL 580 L V L+ FSE G+V+ A V T +S+G+G + L Sbjct: 251 LPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNL 310 Query: 581 EGQTIRVNRA 610 EG+ IRVN A Sbjct: 311 EGRAIRVNVA 320 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/81 (49%), Positives = 54/81 (66%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++YVGN+P V N L +F+ HG VV A V+YD+ +GRSR FGFVTMS +E+ AI + Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 266 LNDTEVGGRKIKVNVTESFLP 328 L+ + GR I+VNV E P Sbjct: 305 LDGQNLEGRAIRVNVAEERPP 325
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 106 bits (265), Expect = 5e-23 Identities = 64/184 (34%), Positives = 94/184 (51%) Frame = +2 Query: 59 EAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTA 238 E E KL+VGN+P + ++ L+ +F G V AEV+Y++ + RSR FGFVTMST Sbjct: 89 EYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTV 148 Query: 239 EEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVT 418 EE A+E + ++ GR + VN S PE P Y++YVGN+ + Sbjct: 149 EEADKAVELYSQYDLNGRLLTVNKAAP-----RGSRPERAPRTFQPTYRIYVGNIPWDID 203 Query: 419 TEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIR 598 L+ FSE G+V+SA V + +S+G+G + L+G+TIR Sbjct: 204 DARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIR 263 Query: 599 VNRA 610 VN A Sbjct: 264 VNAA 267 Score = 77.8 bits (190), Expect = 3e-14 Identities = 38/79 (48%), Positives = 54/79 (68%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 T ++YVGNIP + + L +F+ HG VV A V++D+ SGRSR FGFVTMS+ E++ AI Sbjct: 190 TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 249 Query: 260 ESLNDTEVGGRKIKVNVTE 316 +L+ + GR I+VN E Sbjct: 250 ANLDGQTLDGRTIRVNAAE 268
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 106 bits (264), Expect = 7e-23 Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 2/177 (1%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K++VGN+P + + L+ +F G V EV+YDK +GRSR FGFVTMS+ EEV AA + Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 266 LNDTEVGGRKIKVN--VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 N E+ GR ++VN N DS +VYVGNLA V + L+ Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETL 207 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 FSE+G+V+ A V + +S+G+G + +L G+ IRV+ A Sbjct: 208 FSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264 Score = 79.3 bits (194), Expect = 9e-15 Identities = 41/84 (48%), Positives = 58/84 (69%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 ++ ++YVGN+ V D L +F+ G VV A+V+YD+ SGRSR FGFVT S+AEEV A Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 245 Query: 257 IESLNDTEVGGRKIKVNVTESFLP 328 IESL+ ++ GR I+V+ E+ P Sbjct: 246 IESLDGVDLNGRAIRVSPAEARPP 269
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 105 bits (263), Expect = 9e-23 Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 8/183 (4%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K++VGN+ + + L+ +F G V EV+YDK +GRSR FGFVTMS+ EEV AA + Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 266 LNDTEVGGRKIKVN--------VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 421 N E+ GR ++VN SF N DS +VYVGNLA V Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 207 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 + L+ FSE+G+V+ A V + +S+G+G + +L G+ IRV Sbjct: 208 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267 Query: 602 NRA 610 + A Sbjct: 268 SPA 270 Score = 79.3 bits (194), Expect = 9e-15 Identities = 41/84 (48%), Positives = 58/84 (69%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 ++ ++YVGN+ V D L +F+ G VV A+V+YD+ SGRSR FGFVT S+AEEV A Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 251 Query: 257 IESLNDTEVGGRKIKVNVTESFLP 328 IESL+ ++ GR I+V+ E+ P Sbjct: 252 IESLDGVDLNGRAIRVSPAEARPP 275
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 105 bits (262), Expect = 1e-22 Identities = 67/192 (34%), Positives = 97/192 (50%), Gaps = 14/192 (7%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 A KL+VGN+P V + +L+ +F + G V EV+YDK +GRSR FGFVTMS+ EV AA Sbjct: 89 ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148 Query: 257 IESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSF--------------VDSQYKVYV 394 + N E+ GR ++VN D + SF S +VYV Sbjct: 149 AQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYV 208 Query: 395 GNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNT 574 GNL+ V L++ FSE+G+V+ A V + +SKG+G + Sbjct: 209 GNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGA 268 Query: 575 ELEGQTIRVNRA 610 +L+G+ IRV+ A Sbjct: 269 DLDGRQIRVSEA 280 Score = 70.5 bits (171), Expect = 4e-12 Identities = 35/81 (43%), Positives = 56/81 (69%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++YVGN+ V + L ++F+ G VV A V+YD+ SGRS+ FGFVT +++EV AI+S Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 266 LNDTEVGGRKIKVNVTESFLP 328 L+ ++ GR+I+V+ E+ P Sbjct: 265 LDGADLDGRQIRVSEAEARPP 285
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 75.1 bits (183), Expect = 2e-13 Identities = 38/74 (51%), Positives = 50/74 (67%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VGN+ V + +L+ +F + G V EV+YDK +GRSR FGFVTMSTA EV AA + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 266 LNDTEVGGRKIKVN 307 N E GR ++VN Sbjct: 160 FNGYEFEGRPLRVN 173 Score = 73.9 bits (180), Expect = 4e-13 Identities = 38/81 (46%), Positives = 55/81 (67%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +LYVGN+ V + L +F G VV A V+YD+ SGRS+ FGFVT+S+++EV AI S Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 266 LNDTEVGGRKIKVNVTESFLP 328 LN ++ GR+I+V+ E+ P Sbjct: 318 LNGADLDGRQIRVSEAEARPP 338 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/76 (32%), Positives = 40/76 (52%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 ++YVGNL+ V L+N F+E+G+V+ A V + +SKG+G Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 563 XNNTELEGQTIRVNRA 610 N +L+G+ IRV+ A Sbjct: 318 LNGADLDGRQIRVSEA 333 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/90 (31%), Positives = 37/90 (41%) Frame = +2 Query: 335 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 D SAP SF K++VGNL+ V + L F G V V T +S+G+G Sbjct: 85 DDSAPVERNSF-SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFG 143 Query: 515 XXXXXXXXXXXXXXXXXNNTELEGQTIRVN 604 N E EG+ +RVN Sbjct: 144 FVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 73.6 bits (179), Expect = 5e-13 Identities = 47/180 (26%), Positives = 80/180 (44%) Frame = +2 Query: 71 ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVA 250 E + R LYVGN+ + +T D L F G + ++M DK + ++ + FV + + Sbjct: 70 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDAN 128 Query: 251 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVL 430 A+++LN ++ +K+N A +S+ S D + ++VG+L V E L Sbjct: 129 IALQTLNGKQIENNIVKINW-----------AFQSQQSSSDDTFNLFVGDLNVNVDDETL 177 Query: 431 KNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 +N F + LS V T S+GYG +L G+ +R+N A Sbjct: 178 RNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 237
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 73.2 bits (178), Expect = 6e-13 Identities = 50/176 (28%), Positives = 84/176 (47%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R LYVGN+ R VT + +F+ G +++ + S + FV + AAA+ Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALA 66 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFF 442 ++N ++ G+++KVN A+ P S+ + + V+VG+L+ ++TTE +K+ F Sbjct: 67 AMNGRKILGKEVKVNW---------ATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAF 117 Query: 443 SEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G++ A V + T KSKGYG L G+ IR N A Sbjct: 118 APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 70.9 bits (172), Expect = 3e-12 Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 13/194 (6%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L+VG +P + +D+L +F+ G V + V+ +K S R FG+VT S E+V A++ + Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 269 NDTEVGGRKIKVNVTESFL--------PNIDASAPESEP-----SFVDSQYKVYVGNLAK 409 E G KI V V + L N +A +P+ EP D + ++ + NL+ Sbjct: 65 TTFE--GCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSF 122 Query: 410 KVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQ 589 K + + LK F+ G VL + + P K +G+ N E++G+ Sbjct: 123 KCSEDDLKAVFTHYGTVLEVNIPKKP-DGKMRGFAFVQFKNLLEAGKALKGANMKEIKGR 181 Query: 590 TIRVNRA*T*QKFR 631 T+ V+ A K++ Sbjct: 182 TVAVDWAVAKDKYK 195 Score = 40.8 bits (94), Expect = 0.004 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L + N+ + D+L A+F +GTV+ + K G+ R F FV E A++ Sbjct: 114 RLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIP-KKPDGKMRGFAFVQFKNLLEAGKALKG 172 Query: 266 LNDTEVGGRKIKVN 307 N E+ GR + V+ Sbjct: 173 ANMKEIKGRTVAVD 186
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 70.5 bits (171), Expect = 4e-12 Identities = 49/174 (28%), Positives = 82/174 (47%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ ++ + L F++ G +V +V D SG+S+ +GFV + E AIE L Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N + +++ V FL + + ++ F + VYV NLA+ T + LKN F E Sbjct: 185 NGMLLNDKQVYVG---PFLRRQERDSTANKTKFTN----VYVKNLAESTTDDDLKNAFGE 237 Query: 449 KGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 G++ SA V + G KSKG+G N + + + V RA Sbjct: 238 YGKITSAVVMK-DGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRA 290 Score = 62.0 bits (149), Expect = 1e-09 Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 41 ASSAVMEAPE--------ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYS 196 +++AV AP + LYVG++ VT+ +L F GTVV V D + Sbjct: 14 STAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVT 73 Query: 197 GRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDS 376 RS +G+V + ++ A AI+ LN + G+ I+V + D S S Sbjct: 74 RRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR-----DPSVRRSGAG---- 124 Query: 377 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 +++ NL + + + L + FS G ++S V+ + + +SKGYG Sbjct: 125 --NIFIKNLDESIDHKALHDTFSSFGNIVSCKVA-VDSSGQSKGYG 167 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/103 (26%), Positives = 55/103 (53%) Frame = +2 Query: 8 RGRRRAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYD 187 + R ++V + EA ++ + LYV N+ ++++++L +F+ GTV ++VM D Sbjct: 293 KSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD 352 Query: 188 KYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTE 316 +G S+ GFV +T EE A+ L+ + + + V + + Sbjct: 353 P-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394 Score = 37.0 bits (84), Expect = 0.051 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 3/107 (2%) Frame = +2 Query: 341 SAPESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 SAP + +Q+ +YVG+L VT L + F + G V++ V R T +S GY Sbjct: 20 SAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGY 79 Query: 512 GXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA*T*QKFRTGGKGRI 652 G N L G+ IRV + R G G I Sbjct: 80 GYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNI 126
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 68.9 bits (167), Expect = 1e-11 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 2/183 (1%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 E+ + LYVGN+ R VT + +F+ G +++ D + + + FV Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHA 59 Query: 248 AAAIESLNDTEVGGRKIKVN--VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 421 AAA+ ++N ++ G+++KVN T S +S+ + + V+VG+L+ ++TT Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITT 119 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E +K F+ G + A V + T KSKGYG L G+ IR Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179 Query: 602 NRA 610 N A Sbjct: 180 NWA 182 Score = 63.5 bits (153), Expect = 5e-10 Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 13/202 (6%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K +SS V+ ++VG++ +T +++ A FA G + A V+ D +G+S+ Sbjct: 89 KDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKG 148 Query: 212 FGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLP-------------NIDASAPE 352 +GFV+ + AI+ + +GGR+I+ N P + D + Sbjct: 149 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQ 208 Query: 353 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXX 532 S P S VY G + +T ++++ FS G+++ V KGY Sbjct: 209 SSP----SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFNS 258 Query: 533 XXXXXXXXXXXNNTELEGQTIR 598 N T +EG ++ Sbjct: 259 HESAAHAIVSVNGTTIEGHVVK 280
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 68.9 bits (167), Expect = 1e-11 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 15/191 (7%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGR---------------SRRFG 217 R LYVGN+ R VT + +F+ G +++ ++ R + + Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVG 397 FV + AAA+ ++N ++ G+++KVN A+ P S+ + + V+VG Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNW---------ATTPSSQKKDTSNHFHVFVG 119 Query: 398 NLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTE 577 +L+ ++TTE +K+ F+ G++ A V + T KSKGYG Sbjct: 120 DLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW 179 Query: 578 LEGQTIRVNRA 610 L G+ IR N A Sbjct: 180 LGGRQIRTNWA 190
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 68.6 bits (166), Expect = 2e-11 Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 2/183 (1%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 E+ + LYVGN+ R VT + +F+ G +++ D + + + FV Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHA 59 Query: 248 AAAIESLNDTEVGGRKIKVN--VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 421 AAA+ ++N ++ G+++KVN T S +S+ + V+VG+L+ ++TT Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E +K F+ G + A V + T KSKGYG L G+ IR Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179 Query: 602 NRA 610 N A Sbjct: 180 NWA 182 Score = 63.2 bits (152), Expect = 7e-10 Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 13/202 (6%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K +SS V+ ++VG++ +T +++ A FA G + A V+ D +G+S+ Sbjct: 89 KDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG 148 Query: 212 FGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLP-------------NIDASAPE 352 +GFV+ + AI+ + +GGR+I+ N P + D + Sbjct: 149 YGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQ 208 Query: 353 SEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXX 532 S P + VY G + +T ++++ FS G+++ V KGY Sbjct: 209 SSP----NNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKGYSFVRFSS 258 Query: 533 XXXXXXXXXXXNNTELEGQTIR 598 N T +EG ++ Sbjct: 259 HESAAHAIVSVNGTTIEGHVVK 280
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 68.6 bits (166), Expect = 2e-11 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 T ++VG + V + L F +GT+V A V+ D SGRS+ +G+V T E AA+ Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321 Query: 260 ESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK----VYVGNLAKKVTTEV 427 + E+ GR + ++++ N A + +F D + V+VGNL+ T + Sbjct: 322 AANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDD 381 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 L F G++ S + P + + KG+G Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFG 410 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++VGN+ T D+LS F G + + D SGR + FG+VT S + +E + Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426 Query: 269 NDTEVGGRKIKVN 307 N + GR +++ Sbjct: 427 NGHFIAGRPCRLD 439 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/73 (24%), Positives = 31/73 (42%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 V+VG L+ V + L F E G ++ A V + +SKGYG Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324 Query: 566 NNTELEGQTIRVN 604 E++G+ + ++ Sbjct: 325 GTKEIDGRMVNLD 337
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 68.2 bits (165), Expect = 2e-11 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +YV N+P+ +T+DEL F +G + A VM D+ SG SR FGFV + E A A+E + Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 N +G + V + + + E + K +Y+ NL V E LK Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FSE G V S V + S+G+G Sbjct: 346 EMFSEYGNVTSCKV-MMNSQGLSRGFG 371 Score = 63.9 bits (154), Expect = 4e-10 Identities = 48/174 (27%), Positives = 79/174 (45%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ ++ N L F++ GT++ +V D GRS+ +GFV E AAI+ L Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRSKGYGFVQFEKEETAQAAIDKL 192 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N + +++ V F+ D + SE V S VYV NL K++T + LK F + Sbjct: 193 NGMLLNDKQVFVG---HFVRRQDRA--RSESGAVPSFTNVYVKNLPKEITDDELKKTFGK 247 Query: 449 KGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 G++ SA V + + S+ +G N L + V RA Sbjct: 248 YGDISSAVVMK-DQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 300 Score = 50.4 bits (119), Expect = 4e-06 Identities = 27/83 (32%), Positives = 46/83 (55%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 E+L LY+ N+ +V +++L MF+ +G V +VM + G SR FGFV S EE Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEA 381 Query: 248 AAAIESLNDTEVGGRKIKVNVTE 316 A++ +N +G + + V + + Sbjct: 382 LLAMKEMNGKMIGRKPLYVALAQ 404
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 66.6 bits (161), Expect = 6e-11 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ +++ N L F+A G ++ +V+ D+ S+ + FV T E AIE + Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + RK+ V +S E+E ++ VY+ N ++V E LK FS Sbjct: 159 NGMLLNDRKVFVGRFKS------RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS 212 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G+ LS V R P KSKG+G N E+ G+ I V RA Sbjct: 213 QFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA 266 Score = 56.2 bits (134), Expect = 8e-08 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N V ++ L +F+ G + +VM D +G+S+ FGFV+ E+ A+E + Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD------SQYK---VYVGNLAKKVTT 421 N E+ G+ I V + ++ A E + F S+Y+ +Y+ NL + Sbjct: 252 NGKEISGKIIFVGRAQK---KVERQA-ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 E L+ FS G + SA V G +SKG+G Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFG 336 Score = 54.7 bits (130), Expect = 2e-07 Identities = 36/136 (26%), Positives = 60/136 (44%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LY+ N+ T+ +++L F+ G++ A+VM + GRS+ FGFV S+ EE A+ + Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N VG + + V + A E + + +QY V + +L F Sbjct: 354 NGRIVGSKPLYVAL---------AQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA 404 Query: 449 KGEVLSATVSRIPGTP 496 G V + G P Sbjct: 405 AGGYFVPAVPQAQGRP 420 Score = 35.0 bits (79), Expect = 0.20 Identities = 26/89 (29%), Positives = 36/89 (40%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +YVG+L VT +L FS G VLS V R T +S GY Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 566 NNTELEGQTIRVNRA*T*QKFRTGGKGRI 652 N ++G+ IR+ + R G G + Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNV 101
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 66.6 bits (161), Expect = 6e-11 Identities = 54/149 (36%), Positives = 70/149 (46%), Gaps = 7/149 (4%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +YV N+P+ + DEL F G + A VM D+ SG SR FGFV E A+A+E + Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289 Query: 269 NDTEVG------GRKIKVNVTESFLPNIDASAPESEPSFVDSQ-YKVYVGNLAKKVTTEV 427 N +G GR K + E L E F SQ +Y+ NL V E Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRR--KFEQERINRFEKSQGANLYLKNLDDSVDDEK 347 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 LK FSE G V S+ V P S+G+G Sbjct: 348 LKEMFSEYGNVTSSKVMLNP-QGMSRGFG 375 Score = 58.2 bits (139), Expect = 2e-08 Identities = 44/174 (25%), Positives = 78/174 (44%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ ++ N L F++ GT++ +V D +GRS+ +GFV E AAI+ L Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N + +++ V F+ + + E+ P+ VYV NL K++ + L+ F + Sbjct: 197 NGMLMNDKQVFVG---HFIRRQERARDENTPT--PRFTNVYVKNLPKEIGEDELRKTFGK 251 Query: 449 KGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 G + SA V R + S+ +G N L + V RA Sbjct: 252 FGVISSAVVMR-DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304 Score = 29.6 bits (65), Expect = 8.2 Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 4/111 (3%) Frame = +2 Query: 332 IDASAPESEPSFVDSQY----KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPK 499 + S P P V Q +Y G+L KVT L + F V+S V R + Sbjct: 29 VPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCR-DQNRR 87 Query: 500 SKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA*T*QKFRTGGKGRI 652 S GY N T L + IR+ + R GKG I Sbjct: 88 SLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNI 138
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 66.2 bits (160), Expect = 8e-11 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV NI T+++ +FA G +V A + D G+ + FGFV E+ A+E+L Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEAL 278 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 ND+E+ G K+ V + + + E ++ K ++V NL V E L+ Sbjct: 279 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 338 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 F+ G + SA V R KSKG+G Sbjct: 339 EEFAPYGTITSAKVMRTE-NGKSKGFG 364 Score = 61.6 bits (148), Expect = 2e-09 Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ + N L F+ G ++ +++ D+ +G+S+ FGFV AI++L Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDAL 185 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + G++I V P++ +S+ + Y +YV N+ + T E + F+ Sbjct: 186 NGMLLNGQEIYV------APHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA 239 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G ++SA++ + K KG+G N++EL G+ + V RA Sbjct: 240 KFGPIVSASLEK-DADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 293 Score = 52.0 bits (123), Expect = 2e-06 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L+V N+ +V +++L FA +GT+ A+VM + +G+S+ FGFV ST EE AI Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEK 381 Query: 269 NDTEVGGRKIKVNVTE 316 N V G+ + V + + Sbjct: 382 NQQIVAGKPLYVAIAQ 397
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 65.1 bits (157), Expect = 2e-10 Identities = 40/152 (26%), Positives = 76/152 (50%) Frame = +2 Query: 59 EAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTA 238 E EE AT ++VG + ++ ++ L F G V+ A V+Y++ + RSR +G+V Sbjct: 162 EETEEPAT--IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENK 219 Query: 239 EEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVT 418 AI+ + E+ GR I +++ S + A + + + +++GNL+ Sbjct: 220 SYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNAD 279 Query: 419 TEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 + + F++ GEV+S + P T + KG+G Sbjct: 280 RDAIFELFAKHGEVVSVRIPTHPETEQPKGFG 311 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/83 (26%), Positives = 42/83 (50%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L++GN+ D + +FA HG VV + + + + FG+V S E+ A+++L Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 269 NDTEVGGRKIKVNVTESFLPNID 337 + R ++++ + S PN D Sbjct: 329 QGEYIDNRPVRLDFS-SPRPNND 350 Score = 35.0 bits (79), Expect = 0.20 Identities = 20/70 (28%), Positives = 30/70 (42%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 ++VG L+ + E LK F G V+ A V GT +S+GYG Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 566 NNTELEGQTI 595 E++G+ I Sbjct: 230 QGKEIDGRPI 239
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 65.1 bits (157), Expect = 2e-10 Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 1/187 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +YVG + V+ L +F G VV + D+ +G+ + +GFV + E+ AI+ + Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N ++ G+ I+VN + N+D A +++GNL ++ ++L + FS Sbjct: 75 NMIKLYGKPIRVNKASAHNKNLDVGA------------NIFIGNLDPEIDEKLLYDTFSA 122 Query: 449 KGEVL-SATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA*T*QK 625 G +L + + R P T SKGY N L + I V+ A Sbjct: 123 FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA----- 177 Query: 626 FRTGGKG 646 F+ KG Sbjct: 178 FKKDSKG 184
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 64.3 bits (155), Expect = 3e-10 Identities = 41/146 (28%), Positives = 75/146 (51%) Frame = +2 Query: 71 ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVA 250 ++ L V +P+ +T DEL ++F++ G V A+++ DK +G S +GFV TA++ Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 Query: 251 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVL 430 AI +LN + + IKV+ + P SE V +Y+ L + +T + + Sbjct: 76 RAINTLNGLRLQSKTIKVSY----------ARPSSE---VIKDANLYISGLPRTMTQKDV 122 Query: 431 KNFFSEKGEVLSATVSRIPGTPKSKG 508 ++ FS G ++++ V T S+G Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRG 148 Score = 53.9 bits (128), Expect = 4e-07 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 39/234 (16%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + E + LY+ +PRT+T ++ MF+ G ++ + V+ D+ +G Sbjct: 85 RLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPN---------------- 331 SR F+ E AI S N + G + V + PN Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 204 Query: 332 -----------------------IDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFF 442 + + + P S + +++ NL + +L F Sbjct: 205 RRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMF 264 Query: 443 SEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVN 604 G V + V R T K KG+G N L + ++V+ Sbjct: 265 GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318 Score = 34.3 bits (77), Expect = 0.33 Identities = 22/73 (30%), Positives = 32/73 (43%) Frame = +2 Query: 392 VGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNN 571 V L + +T + L++ FS GEV SA + R S GYG N Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 Query: 572 TELEGQTIRVNRA 610 L+ +TI+V+ A Sbjct: 84 LRLQSKTIKVSYA 96
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 63.9 bits (154), Expect = 4e-10 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T++ L + F GT+ VM D + RSR FGFVT +T EE Sbjct: 9 PEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESE-PSFVDSQYKVYVGNLAKKVTT 421 V AA+ + +V GR ++ P S +S+ P + K++VG + + Sbjct: 67 VDAAMNA-RPHKVDGRVVE--------PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEE 117 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 L+++F + G++ + G+ K +G+ Sbjct: 118 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 147 Score = 38.9 bits (89), Expect = 0.014 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 L +K++VG I L F +G + E+M D+ SG+ R F FVT + V Sbjct: 101 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 158 Score = 36.6 bits (83), Expect = 0.067 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 63.9 bits (154), Expect = 4e-10 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T++ L + F GT+ VM D + RSR FGFVT +T EE Sbjct: 9 PEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESE-PSFVDSQYKVYVGNLAKKVTT 421 V AA+ + +V GR ++ P S +S+ P + K++VG + + Sbjct: 67 VDAAMNA-RPHKVDGRVVE--------PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEE 117 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 L+++F + G++ + G+ K +G+ Sbjct: 118 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 147 Score = 38.9 bits (89), Expect = 0.014 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 L +K++VG I L F +G + E+M D+ SG+ R F FVT + V Sbjct: 101 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 158 Score = 36.6 bits (83), Expect = 0.067 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 63.9 bits (154), Expect = 4e-10 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K L S E + LYV N+PRT+T+D+L +F +G++V+ ++ DK +GR R Sbjct: 194 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 253 Query: 212 FGFVTMSTAEEVAAAIESLNDT--EVGGRKIKVNVTE 316 FV + EE AI +LN+ E G + + V + E Sbjct: 254 VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE 290
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 63.9 bits (154), Expect = 4e-10 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 2/176 (1%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ R + N + F+A G ++ +V D+ G S+ +GFV T E +I+ + Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKV 150 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N + G+K+ V F+P + E + + + VYV N + E LK FF Sbjct: 151 NGMLLNGKKVYVG---KFIPRKEREKELGEKAKLFT--NVYVKNFTEDFDDEKLKEFFEP 205 Query: 449 KGEVLSATV-SRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTEL-EGQTIRVNRA 610 G++ S V S+ G KSKG+G N ++ EG+++ V RA Sbjct: 206 YGKITSYKVMSKEDG--KSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA 259 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/76 (36%), Positives = 43/76 (56%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV N+ T+ +D L F+ +G + A+VM D+ GRS+ FGFV + A E A+ L Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVTEL 347 Query: 269 NDTEVGGRKIKVNVTE 316 N VG + + V + + Sbjct: 348 NGRVVGSKPLYVALAQ 363 Score = 50.8 bits (120), Expect = 3e-06 Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 6/148 (4%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +YV N +++L F +G + +VM K G+S+ FGFV T E AA+++L Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 269 NDTEVG-GRKIKVNVTESFL---PNIDASAPESEPSFVDSQYKV--YVGNLAKKVTTEVL 430 N ++G G+ + V + + E + +S + V YV NL + + L Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303 Query: 431 KNFFSEKGEVLSATVSRIPGTPKSKGYG 514 + FS G + SA V +SKG+G Sbjct: 304 RIAFSPYGNITSAKV-MTDEEGRSKGFG 330 Score = 29.6 bits (65), Expect = 8.2 Identities = 24/89 (26%), Positives = 34/89 (38%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +YVG+L + V L + FS G VLS V R T +S GY Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 566 NNTELEGQTIRVNRA*T*QKFRTGGKGRI 652 N + + IR+ + R G G + Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVGNV 92
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 63.9 bits (154), Expect = 4e-10 Identities = 30/78 (38%), Positives = 50/78 (64%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 + +VG + +N+ L FA++G ++ ++V+ D+ +GRSR FGFVT S+ + AIE+ Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68 Query: 266 LNDTEVGGRKIKVNVTES 319 +N E+ GR I VN +S Sbjct: 69 MNGKELDGRNITVNQAQS 86 Score = 50.4 bits (119), Expect = 4e-06 Identities = 30/92 (32%), Positives = 45/92 (48%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 D +Y+ +VG LA + E L+N F+ GE+L + V T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64 Query: 551 XXXXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N EL+G+ I VN+A + R GG G Sbjct: 65 AIENMNGKELDGRNITVNQA----QSRGGGGG 92
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 63.9 bits (154), Expect = 4e-10 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T++ L + F GT+ VM D + RSR FGFVT +T EE Sbjct: 9 PEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESE-PSFVDSQYKVYVGNLAKKVTT 421 V AA+ + +V GR ++ P S +S+ P + K++VG + + Sbjct: 67 VDAAMNA-RPHKVDGRVVE--------PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEE 117 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 L+++F + G++ + G+ K +G+ Sbjct: 118 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 147 Score = 38.9 bits (89), Expect = 0.014 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 L +K++VG I L F +G + E+M D+ SG+ R F FVT + V Sbjct: 101 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 158 Score = 36.6 bits (83), Expect = 0.067 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 63.9 bits (154), Expect = 4e-10 Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T++ L + F GT+ VM D + RSR FGFVT +T EE Sbjct: 9 PEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESE-PSFVDSQYKVYVGNLAKKVTT 421 V AA+ + +V GR ++ P S +S+ P + K++VG + + Sbjct: 67 VDAAMNA-RPHKVDGRVVE--------PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEE 117 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 L+++F + G++ + G+ K +G+ Sbjct: 118 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 147 Score = 38.9 bits (89), Expect = 0.014 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 L +K++VG I L F +G + E+M D+ SG+ R F FVT + V Sbjct: 101 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 158 Score = 36.6 bits (83), Expect = 0.067 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 63.5 bits (153), Expect = 5e-10 Identities = 32/73 (43%), Positives = 48/73 (65%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +YVGN+ V+ +L+A+FA +G+V R ++ D+ +GR R FGFV + E AAIE+L Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 269 NDTEVGGRKIKVN 307 + E GR +KVN Sbjct: 63 DGAEWMGRDLKVN 75 Score = 33.1 bits (74), Expect = 0.74 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +YVGNL+ V+ L F+E G V + T + +G+G Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 566 NNTELEGQTIRVNRA 610 + E G+ ++VN+A Sbjct: 63 DGAEWMGRDLKVNKA 77
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 63.5 bits (153), Expect = 5e-10 Identities = 51/189 (26%), Positives = 88/189 (46%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 ASS+ +P T LYVG++ +VT L FA ++ + D SGRS +G+ Sbjct: 13 ASSSGSSSP---VTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGY 69 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGN 400 + ++ AIE N++ + G+ I+V + AP++ + V + V+V N Sbjct: 70 ANFLSRQDANLAIEKKNNSLLNGKMIRVMWS--------VRAPDARRNGVGN---VFVKN 118 Query: 401 LAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTEL 580 L + VT VL++ F + G ++S V+ + KS+GYG N+T + Sbjct: 119 LPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIV 177 Query: 581 EGQTIRVNR 607 + I V + Sbjct: 178 ADKEIYVGK 186 Score = 52.4 bits (124), Expect = 1e-06 Identities = 47/156 (30%), Positives = 66/156 (42%), Gaps = 6/156 (3%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PEE T LY+ N+ V+ D L FA G +V + D+ + R + FV E+ Sbjct: 196 PEEKYTN-LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPED 253 Query: 245 VAAAIESLNDTEVG------GRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLA 406 A E++N T+ G GR K E L E + +YV N+ Sbjct: 254 ARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLRE-QFKEKHEEQKMIAKVSNIYVKNVN 312 Query: 407 KKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 VT E L+ FS+ G + S T KSKG+G Sbjct: 313 VAVTEEELRKHFSQCGTITS-TKLMCDEKGKSKGFG 347 Score = 48.5 bits (114), Expect = 2e-05 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%) Frame = +2 Query: 8 RGRRRAAVKVLASSAVMEAPEE----LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAE 175 R +++A + L E EE +YV N+ VT +EL F+ GT+ + Sbjct: 275 RAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTK 334 Query: 176 VMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTE 316 +M D+ G+S+ FGFV ST EE A+++ + G+ + V + + Sbjct: 335 LMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 63.2 bits (152), Expect = 7e-10 Identities = 44/177 (24%), Positives = 75/177 (42%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++YVG+I + D + F G + + +D + + + F FV E A+E Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 +N +GGR IKV S +P E + S ++YV ++ ++ E +K+ F Sbjct: 191 MNGALMGGRNIKVG-RPSNMPQAQQVIDEVQEE-AKSFNRIYVASIHPDLSEEDIKSVFE 248 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA*T 616 G +L +++ KGYG N +L GQ +RV R+ T Sbjct: 249 AFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSIT 305 Score = 37.4 bits (85), Expect = 0.039 Identities = 19/89 (21%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Frame = +2 Query: 41 ASSAVMEAPEELAT-RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFG 217 A + E EE + ++YV +I ++ +++ ++F A G ++ ++ + +G Sbjct: 212 AQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYG 271 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRKIKV 304 F+ + + + AI S+N ++GG+ ++V Sbjct: 272 FIEYANKQAMDEAIASMNLFDLGGQLLRV 300
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 63.2 bits (152), Expect = 7e-10 Identities = 31/78 (39%), Positives = 48/78 (61%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 + +VG + N+ L FA G V+ ++V+ D+ +GRSR FGFVT S+ + + AIE+ Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68 Query: 266 LNDTEVGGRKIKVNVTES 319 +N E+ GR I VN +S Sbjct: 69 MNGKELDGRNITVNQAQS 86 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/92 (30%), Positives = 43/92 (46%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 D +Y+ +VG LA E L+ F+ G+V+ + V T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLD 64 Query: 551 XXXXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N EL+G+ I VN+A + R GG G Sbjct: 65 AIENMNGKELDGRNITVNQA----QSRGGGGG 92
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 62.8 bits (151), Expect = 9e-10 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K L S E + LYV N+PRT+T+D+L +F +G++V+ ++ DK +GR R Sbjct: 196 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 255 Query: 212 FGFVTMSTAEEVAAAIESLNDT--EVGGRKIKVNVTE 316 FV + EE AI +LN+ E G + + V + + Sbjct: 256 VAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQ 292
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 62.8 bits (151), Expect = 9e-10 Identities = 40/146 (27%), Positives = 75/146 (51%) Frame = +2 Query: 71 ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVA 250 ++ L V +P+ +T +EL ++F++ G V A+++ DK +G S +GFV TA++ Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 Query: 251 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVL 430 AI +LN + + IKV+ + P SE V +Y+ L + +T + + Sbjct: 76 RAISTLNGLRLQSKTIKVSY----------ARPSSE---VIKDANLYISGLPRTMTQKDV 122 Query: 431 KNFFSEKGEVLSATVSRIPGTPKSKG 508 ++ FS G ++++ V T S+G Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRG 148 Score = 50.4 bits (119), Expect = 4e-06 Identities = 45/234 (19%), Positives = 79/234 (33%), Gaps = 39/234 (16%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + E + LY+ +PRT+T ++ MF+ G ++ + V+ D+ +G Sbjct: 85 RLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPN---------------- 331 SR F+ E AI S + G + V + PN Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPA 204 Query: 332 -----------------------IDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFF 442 + + + P S + +++ NL + +L F Sbjct: 205 RRFGGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMF 264 Query: 443 SEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVN 604 G V + V R T K KG+G N L + ++V+ Sbjct: 265 GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVS 318 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/73 (31%), Positives = 32/73 (43%) Frame = +2 Query: 392 VGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNN 571 V L + +T E L++ FS GEV SA + R S GYG N Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83 Query: 572 TELEGQTIRVNRA 610 L+ +TI+V+ A Sbjct: 84 LRLQSKTIKVSYA 96
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 62.8 bits (151), Expect = 9e-10 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 1/98 (1%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +LYVG++ +T D L +F G + ++M D +GRS+ +GF+T S +E A+E Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 266 LNDTEVGGRKIKV-NVTESFLPNIDASAPESEPSFVDS 376 LN E+ GR +KV +VTE DAS S SF+DS Sbjct: 311 LNGFELAGRPMKVGHVTE----RTDAS---SASSFLDS 341 Score = 52.0 bits (123), Expect = 2e-06 Identities = 44/179 (24%), Positives = 71/179 (39%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PEE R ++ + + +L F+ G V ++ D+ S RSR +V Sbjct: 147 PEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSS 206 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 V AI L V G I V +++ A A + ++YVG+L +T + Sbjct: 207 VRLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM-RLYVGSLHFNITED 264 Query: 425 VLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 +L+ F G + S + T +SKGYG N EL G+ ++V Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 62.8 bits (151), Expect = 9e-10 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 1/98 (1%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +LYVG++ +T D L +F G + ++M D +GRS+ +GF+T S +E A+E Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 266 LNDTEVGGRKIKV-NVTESFLPNIDASAPESEPSFVDS 376 LN E+ GR +KV +VTE DAS S SF+DS Sbjct: 311 LNGFELAGRPMKVGHVTE----RTDAS---SASSFLDS 341 Score = 50.8 bits (120), Expect = 3e-06 Identities = 43/179 (24%), Positives = 71/179 (39%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PEE R ++ + + +L F+ G V ++ D+ S RS+ +V Sbjct: 147 PEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 V AI L V G I V +++ A A + ++YVG+L +T + Sbjct: 207 VPLAI-GLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM-RLYVGSLHFNITED 264 Query: 425 VLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 +L+ F G + S + T +SKGYG N EL G+ ++V Sbjct: 265 MLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 62.4 bits (150), Expect = 1e-09 Identities = 42/149 (28%), Positives = 75/149 (50%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T+D L A F G +V VM D + RSR FGF+T S + Sbjct: 20 PEQL--RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYM 77 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 + A ++ ++ GR ++ + +P + +P + + K++VG L E Sbjct: 78 IDNA-QNARPHKIDGRTVE---PKRAVPRQEIDSPNAGATV----KKLFVGGLRDDHDEE 129 Query: 425 VLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 L+ +F + G+++S + T K +G+ Sbjct: 130 CLREYFKDFGQIVSVNIVSDKDTGKKRGF 158 Score = 35.4 bits (80), Expect = 0.15 Identities = 22/94 (23%), Positives = 42/94 (44%) Frame = +2 Query: 329 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 508 N D +EP + K+++G L + T + LK F + G ++ V + P T +S+G Sbjct: 10 NYDDGEEITEP---EQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRG 66 Query: 509 YGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 +G + +++G+T+ RA Sbjct: 67 FGFITYSQSYMIDNAQNARPH-KIDGRTVEPKRA 99
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 62.4 bits (150), Expect = 1e-09 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T++ L + F GT+ VM D + RSR FGFVT +T E+ Sbjct: 9 PEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 66 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESE-PSFVDSQYKVYVGNLAKKVTT 421 V AA+ + +V GR ++ P S +S+ P + K++VG + + Sbjct: 67 VDAAMNA-RPHKVDGRVVE--------PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEE 117 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 L+++F + G++ + G+ K +G+ Sbjct: 118 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGF 147 Score = 38.1 bits (87), Expect = 0.023 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 L +K++VG I L F +G + E+M D+ SG+ R F FVT V Sbjct: 101 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSV 158 Score = 36.6 bits (83), Expect = 0.067 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K+++G L+ + T E L++ F + G + V R P T +S+G+G Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFG 57
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/81 (38%), Positives = 45/81 (55%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K L S E + LYV N+PRT+T+DEL +F +G +V+ ++ DK +GR R Sbjct: 171 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRG 230 Query: 212 FGFVTMSTAEEVAAAIESLND 274 FV + EE AI +LN+ Sbjct: 231 VAFVRFNKREEAQEAISALNN 251
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 61.6 bits (148), Expect = 2e-09 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 1/196 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T+D L F GT+ VM D + RSR FGFVT S EE Sbjct: 31 PEQL--RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTT 421 V AA+ +V GR ++ P S +S +P + K++VG + + Sbjct: 89 VDAAM-CARPHKVDGRVVE--------PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEE 139 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+++F + G++ + V + K +G+ +T + G V Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEV 198 Query: 602 NRA*T*QKFRTGGKGR 649 +A + Q+ ++ G R Sbjct: 199 KKALSKQEMQSAGSQR 214 Score = 34.7 bits (78), Expect = 0.25 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 +P + K+++G L+ + T + L+ F + G + V R P T +S+G+G Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 79
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 61.6 bits (148), Expect = 2e-09 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 1/196 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T+D L F GT+ VM D + RSR FGFVT S EE Sbjct: 31 PEQL--RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTT 421 V AA+ +V GR ++ P S +S +P + K++VG + + Sbjct: 89 VDAAM-CARPHKVDGRVVE--------PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEE 139 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+++F + G++ + V + K +G+ +T + G V Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEV 198 Query: 602 NRA*T*QKFRTGGKGR 649 +A + Q+ ++ G R Sbjct: 199 KKALSKQEMQSAGSQR 214 Score = 34.7 bits (78), Expect = 0.25 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 +P + K+++G L+ + T + L+ F + G + V R P T +S+G+G Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 79
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 61.6 bits (148), Expect = 2e-09 Identities = 41/143 (28%), Positives = 73/143 (51%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 RKL++G + T++ L F G +V VM D + RSR FGF+T S A V A + Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-Q 75 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFF 442 + +V GR ++ + +P + PE+ + K++VG + +++ L+++F Sbjct: 76 NARPHKVDGRVVE---PKRAVPRTEIGRPEAGATV----KKLFVGGIKEEMEENDLRDYF 128 Query: 443 SEKGEVLSATVSRIPGTPKSKGY 511 + G V+SA + T K +G+ Sbjct: 129 KQYGTVVSAAIVVDKETRKKRGF 151 Score = 42.7 bits (99), Expect = 0.001 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Frame = +2 Query: 65 PEELAT-RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAE 241 PE AT +KL+VG I + ++L F +GTVV A ++ DK + + R F FV + Sbjct: 101 PEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYD 160 Query: 242 EVAAAIESLNDTEVGGRKIKVNVTESFLPNIDA 340 V S N ++ G+ I V + LP DA Sbjct: 161 PVDKICLSRNH-QIRGKHIDV---KKALPKGDA 189 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = +2 Query: 329 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 508 N+D EP V K+++G L + T E LK F + GE++ V + P T +S+G Sbjct: 3 NMDRENDHGEPEHVR---KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRG 59 Query: 509 YG 514 +G Sbjct: 60 FG 61
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 61.6 bits (148), Expect = 2e-09 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 1/196 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T+D L F GT+ VM D + RSR FGFVT S EE Sbjct: 31 PEQL--RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTT 421 V AA+ +V GR ++ P S +S +P + K++VG + + Sbjct: 89 VDAAM-CARPHKVDGRVVE--------PKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEE 139 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+++F + G++ + V + K +G+ +T + G V Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEV 198 Query: 602 NRA*T*QKFRTGGKGR 649 +A + Q+ ++ G R Sbjct: 199 KKALSKQEMQSAGSQR 214 Score = 34.7 bits (78), Expect = 0.25 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 +P + K+++G L+ + T + L+ F + G + V R P T +S+G+G Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFG 79
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.2 bits (147), Expect = 3e-09 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ +++ N L F+A G ++ +V+ D+ S+ +GFV T E AIE + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + RK+ V +S E+E ++ VY+ N + + E LK+ F Sbjct: 159 NGMLLNDRKVFVGRFKS------RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG 212 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G LS V + KSKG+G N EL G+ I V RA Sbjct: 213 KFGPALSVKV-MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 57.4 bits (137), Expect = 4e-08 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + ++ L +F G + +VM D+ SG+S+ FGFV+ E+ A++ + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N E+ G++I V + + + E D ++Y+ +YV NL + E L+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + SA V G +SKG+G Sbjct: 312 KEFSPFGTITSAKVMMEGG--RSKGFG 336 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV N+ + ++ L F+ GT+ A+VM + GRS+ FGFV S+ EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 269 NDTEVGGRKIKVNVTE 316 N V + + V + + Sbjct: 354 NGRIVATKPLYVALAQ 369
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 61.2 bits (147), Expect = 3e-09 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ +++ N L F+A G ++ +V+ D+ S+ +GFV T E AIE + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + RK+ V +S E+E ++ VY+ N + + E LK+ F Sbjct: 159 NGMLLNDRKVFVGRFKS------RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG 212 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G LS V + KSKG+G N EL G+ I V RA Sbjct: 213 KFGPALSVKV-MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 57.4 bits (137), Expect = 4e-08 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + ++ L +F G + +VM D+ SG+S+ FGFV+ E+ A++ + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N E+ G++I V + + + E D ++Y+ +YV NL + E L+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + SA V G +SKG+G Sbjct: 312 KEFSPFGTITSAKVMMEGG--RSKGFG 336 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV N+ + ++ L F+ GT+ A+VM + GRS+ FGFV S+ EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 269 NDTEVGGRKIKVNVTE 316 N V + + V + + Sbjct: 354 NGRIVATKPLYVALAQ 369
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.8 bits (146), Expect = 3e-09 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ +++ N L F+A G ++ +V+ D+ S+ +GFV T E AIE + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + RK+ V +S E+E ++ VY+ N + + E LK F Sbjct: 159 NGMLLNDRKVFVGRFKS------RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG 212 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G LS V + KSKG+G N EL G+ I V RA Sbjct: 213 KFGPALSVKV-MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 57.8 bits (138), Expect = 3e-08 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + ++ L +F G + +VM D+ SG+S+ FGFV+ E+ A++ + Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N E+ G++I V + + + E D ++Y+ +YV NL + E L+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + SA V G +SKG+G Sbjct: 312 KEFSPFGTITSAKVMMEGG--RSKGFG 336 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV N+ + ++ L F+ GT+ A+VM + GRS+ FGFV S+ EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 269 NDTEVGGRKIKVNVTE 316 N V + + V + + Sbjct: 354 NGRIVATKPLYVALAQ 369
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.8 bits (146), Expect = 3e-09 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ +++ N L F+A G ++ +V+ D+ S+ +GFV T E AIE + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + RK+ V +S E+E ++ VY+ N + + E LK F Sbjct: 159 NGMLLNDRKVFVGRFKS------QKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG 212 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G LS V + KSKG+G N EL G+ I V RA Sbjct: 213 KFGPALSVKV-MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 57.8 bits (138), Expect = 3e-08 Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + ++ L +F G + +VM D+ SG+S+ FGFV+ E+ A++ + Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N E+ G++I V + + + E D ++Y+ +YV NL + E L+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + SA V G +SKG+G Sbjct: 312 KEFSPFGTITSAKVMMEGG--RSKGFG 336 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV N+ + ++ L F+ GT+ A+VM + GRS+ FGFV S+ EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 269 NDTEVGGRKIKVNVTE 316 N V + + V + + Sbjct: 354 NGRIVATKPLYVALAQ 369
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 60.8 bits (146), Expect = 3e-09 Identities = 43/157 (27%), Positives = 76/157 (48%) Frame = +2 Query: 44 SSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFV 223 SS V E + L V +P+ +T +EL ++F + G + +++ DK +G+S +GFV Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85 Query: 224 TMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNL 403 ++ AI +LN + + IKV+ A S S D+ +YV L Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGL 132 Query: 404 AKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K +T + L+ FS+ G ++++ + T S+G G Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG 169 Score = 52.0 bits (123), Expect = 2e-06 Identities = 26/97 (26%), Positives = 46/97 (47%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + + LYV +P+T+T EL +F+ +G ++ + ++ D+ +G Sbjct: 104 RLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNV 310 SR GF+ E AI+ LN + G + V Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/73 (34%), Positives = 39/73 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L MF G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 269 NDTEVGGRKIKVN 307 N +G R ++V+ Sbjct: 339 NGYRLGDRVLQVS 351 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/94 (28%), Positives = 42/94 (44%) Frame = +2 Query: 329 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 508 N + S+P + DS+ + V L + +T E LK+ F GE+ S + R T +S G Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 509 YGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 YG N L+ +TI+V+ A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 60.8 bits (146), Expect = 3e-09 Identities = 43/157 (27%), Positives = 76/157 (48%) Frame = +2 Query: 44 SSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFV 223 SS V E + L V +P+ +T +EL ++F + G + +++ DK +G+S +GFV Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85 Query: 224 TMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNL 403 ++ AI +LN + + IKV+ A S S D+ +YV L Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGL 132 Query: 404 AKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K +T + L+ FS+ G ++++ + T S+G G Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG 169 Score = 52.0 bits (123), Expect = 2e-06 Identities = 26/97 (26%), Positives = 46/97 (47%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + + LYV +P+T+T EL +F+ +G ++ + ++ D+ +G Sbjct: 104 RLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNV 310 SR GF+ E AI+ LN + G + V Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/73 (34%), Positives = 39/73 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L MF G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 269 NDTEVGGRKIKVN 307 N +G R ++V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/94 (28%), Positives = 42/94 (44%) Frame = +2 Query: 329 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 508 N + S+P + DS+ + V L + +T E LK+ F GE+ S + R T +S G Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 509 YGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 YG N L+ +TI+V+ A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 60.8 bits (146), Expect = 3e-09 Identities = 43/157 (27%), Positives = 76/157 (48%) Frame = +2 Query: 44 SSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFV 223 SS V E + L V +P+ +T +EL ++F + G + +++ DK +G+S +GFV Sbjct: 26 SSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85 Query: 224 TMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNL 403 ++ AI +LN + + IKV+ A S S D+ +YV L Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGL 132 Query: 404 AKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K +T + L+ FS+ G ++++ + T S+G G Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG 169 Score = 52.0 bits (123), Expect = 2e-06 Identities = 26/97 (26%), Positives = 46/97 (47%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + + LYV +P+T+T EL +F+ +G ++ + ++ D+ +G Sbjct: 104 RLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNV 310 SR GF+ E AI+ LN + G + V Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/73 (34%), Positives = 39/73 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L MF G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 269 NDTEVGGRKIKVN 307 N +G R ++V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/94 (28%), Positives = 42/94 (44%) Frame = +2 Query: 329 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 508 N + S+P + DS+ + V L + +T E LK+ F GE+ S + R T +S G Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 509 YGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 YG N L+ +TI+V+ A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 60.8 bits (146), Expect = 3e-09 Identities = 30/81 (37%), Positives = 45/81 (55%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K L S E + LYV N+PRT+T+DEL +F +G +V+ ++ DK +G+ R Sbjct: 154 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRG 213 Query: 212 FGFVTMSTAEEVAAAIESLND 274 FV + EE AI +LN+ Sbjct: 214 VAFVRFNKREEAQEAISALNN 234
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 60.8 bits (146), Expect = 3e-09 Identities = 32/115 (27%), Positives = 60/115 (52%) Frame = +2 Query: 38 LASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFG 217 ++S AV + + + R ++VGNIP T ++L +F+ G+VV ++YD+ +G+ + +G Sbjct: 1 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG 60 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY 382 F E +A+ +LN E GR ++V+ S + + +DS Y Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPY 115 Score = 47.0 bits (110), Expect = 5e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 535 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 536 XXXXXXXXXXNNTELEGQTIRVNRA 610 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 60.8 bits (146), Expect = 3e-09 Identities = 32/115 (27%), Positives = 60/115 (52%) Frame = +2 Query: 38 LASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFG 217 ++S AV + + + R ++VGNIP T ++L +F+ G+VV ++YD+ +G+ + +G Sbjct: 1 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG 60 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY 382 F E +A+ +LN E GR ++V+ S + + +DS Y Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPY 115 Score = 47.0 bits (110), Expect = 5e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 535 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 536 XXXXXXXXXXNNTELEGQTIRVNRA 610 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 60.5 bits (145), Expect = 4e-09 Identities = 43/149 (28%), Positives = 76/149 (51%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T++ L F GT+ VM D S RSR FGFVT + +E Sbjct: 10 PEQL--RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 V AA+ + +V GR ++ + + D+S P + + K++VG + + + Sbjct: 68 VDAAM-TARPHKVDGRVVE---PKRAVSREDSSRPGAHLTV----KKIFVGGIKEDTEED 119 Query: 425 VLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 L+ +F + G++ + G+ K +G+ Sbjct: 120 HLREYFEQYGKIEVIEIMTDRGSGKKRGF 148 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/58 (34%), Positives = 29/58 (50%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 L +K++VG I D L F +G + E+M D+ SG+ R F FVT + V Sbjct: 102 LTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSV 159 Score = 35.0 bits (79), Expect = 0.20 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = +2 Query: 359 PSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 P+ + K+++G L+ + T E L+ F + G + V R P + +S+G+G Sbjct: 7 PNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFG 58
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 60.5 bits (145), Expect = 4e-09 Identities = 38/142 (26%), Positives = 71/142 (50%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L V +P+ +T DE ++F + G + +++ DK +G+S +GFV S + AI +L Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N ++ + IKV+ A S S D+ +YV L K ++ + ++ FS+ Sbjct: 101 NGLKLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQ 147 Query: 449 KGEVLSATVSRIPGTPKSKGYG 514 G ++++ + T S+G G Sbjct: 148 YGRIITSRILLDQATGVSRGVG 169 Score = 47.4 bits (111), Expect = 4e-05 Identities = 21/80 (26%), Positives = 41/80 (51%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K + S + + LYV +P+T++ E+ +F+ +G ++ + ++ D+ +G SR Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRG 167 Query: 212 FGFVTMSTAEEVAAAIESLN 271 GF+ E AI+ LN Sbjct: 168 VGFIRFDKRIEAEEAIKGLN 187 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/77 (32%), Positives = 40/77 (51%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L +F G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 269 NDTEVGGRKIKVNVTES 319 N +G R ++V+ S Sbjct: 346 NGYRLGERVLQVSFKTS 362
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 60.5 bits (145), Expect = 4e-09 Identities = 46/149 (30%), Positives = 66/149 (44%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 EE KL+VG + T + LS F G ++ VM + SGRSR FGFVT + V Sbjct: 2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV 61 Query: 248 AAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEV 427 +++ T + GR I P +P YKV++G L VT Sbjct: 62 NHVLQNGPHT-LDGRTID--------PKPCNPRTLQKPK-KGGGYKVFLGGLPSNVTETD 111 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 L+ FF+ G+V + KS+G+G Sbjct: 112 LRTFFNRYGKVTEVVIMYDQEKKKSRGFG 140 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Frame = +2 Query: 56 MEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 ++ P++ K+++G +P VT +L F +G V +MYD+ +SR FGF++ Sbjct: 87 LQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF-- 144 Query: 236 AEEVAAAIESLND--TEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY 382 EE ++ N+ + G+++++ E P + S S V Y Sbjct: 145 -EEESSVEHVTNERYINLNGKQVEIKKAE---PRDGSGGQNSNNSTVGGAY 191
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 60.1 bits (144), Expect = 6e-09 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ +++ N L +A G ++ V+ D+ S+ +GFV T E AI+ + Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + GRK+ V +S E+E ++ VY+ N + + E LK+ F Sbjct: 159 NGMLLNGRKVFVGQFKS------RKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFG 212 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G LS V + KSKG+G N EL G+ I V RA Sbjct: 213 KFGPALSVKV-MTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 266 Score = 58.2 bits (139), Expect = 2e-08 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + ++ L +F G + +VM D+ SG+S+ FGFV+ E+ A++ + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYKV---YVGNLAKKVTTEVLK 433 N E+ G++I V + + E D ++Y+V YV NL + E L+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + SA V G +SKG+G Sbjct: 312 KAFSPFGTITSAKVMMEGG--RSKGFG 336 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/76 (32%), Positives = 41/76 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV N+ + ++ L F+ GT+ A+VM + GRS+ FGFV S+ EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 269 NDTEVGGRKIKVNVTE 316 N V + + V + + Sbjct: 354 NGRIVATKPLYVALAQ 369
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 60.1 bits (144), Expect = 6e-09 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 3/193 (1%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K + ++ E +E R L+V N+P VT DE+ +F + ++ +K G S+ Sbjct: 354 KAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNK-EGSSKG 409 Query: 212 FGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-V 388 ++ T E A+E TEV GR + ++ T + S ES+ + + K + Sbjct: 410 MAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTG------EKSQQESQKGGGERESKTL 463 Query: 389 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIP--GTPKSKGYGXXXXXXXXXXXXXXXX 562 V NL+ + E L+ F + AT ++P + KGY Sbjct: 464 IVNNLSYAASEETLQELFKK------ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNS 517 Query: 563 XNNTELEGQTIRV 601 NNTE+EG+ IR+ Sbjct: 518 CNNTEIEGRAIRL 530 Score = 55.5 bits (132), Expect = 1e-07 Identities = 43/190 (22%), Positives = 78/190 (41%) Frame = +2 Query: 71 ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVA 250 E ++ L V N+ + + L +F ++ M GR + + FV TAE+ Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAK 512 Query: 251 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVL 430 A+ S N+TE+ GR I++ + P+ + F ++V L++ T E L Sbjct: 513 EALNSCNNTEIEGRAIRLEFSS---PSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETL 569 Query: 431 KNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + F +SA + T SKG+G + E++G + ++ A Sbjct: 570 RESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFA 626 Query: 611 *T*QKFRTGG 640 +F+ GG Sbjct: 627 KPKGEFQRGG 636 Score = 35.8 bits (81), Expect = 0.11 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 5/157 (3%) Frame = +2 Query: 5 ARGRRRAAVKVLASSAVMEAPEE-----LATRKLYVGNIPRTVTNDELSAMFAAHGTVVR 169 A G+R+ K +A+ + EA ++ + L+V N+ T +EL Sbjct: 253 APGKRK---KEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKN 309 Query: 170 AEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAP 349 +V + G S+RFG+V +AE++ A++ LN ++ G +IK+ +S S Sbjct: 310 LQVSEVRI-GSSKRFGYVDFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKS-----KESLK 362 Query: 350 ESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEV 460 E++ ++V NL +VT + +KN F EV Sbjct: 363 ENKKE--RDARTLFVKNLPYRVTEDEMKNVFENALEV 397
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 59.7 bits (143), Expect = 7e-09 Identities = 29/81 (35%), Positives = 45/81 (55%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K L S E + LYV N+PRT+T+D+L +F +G +V+ ++ DK +G+ R Sbjct: 179 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRG 238 Query: 212 FGFVTMSTAEEVAAAIESLND 274 FV + EE AI +LN+ Sbjct: 239 VAFVRFNKREEAQEAISALNN 259
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 59.3 bits (142), Expect = 1e-08 Identities = 43/150 (28%), Positives = 73/150 (48%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE L RK++VG + T+D + ++ G + VM D + RSR FGFVT S E Sbjct: 19 PENL--RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTE 76 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 V AA++ + G+ + + +P D + ES S ++YV + + T + Sbjct: 77 VDAAMKQ-RPHIIDGKTVD---PKRAVPRDDKNRSESNV----STKRLYVSGVREDHTED 128 Query: 425 VLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 +L +F++ G V + + T K +G+G Sbjct: 129 MLTEYFTKYGTVTKSEIILDKATQKPRGFG 158 Score = 47.0 bits (110), Expect = 5e-05 Identities = 21/58 (36%), Positives = 35/58 (60%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 ++T++LYV + T D L+ F +GTV ++E++ DK + + R FGFVT + V Sbjct: 111 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSV 168
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 59.3 bits (142), Expect = 1e-08 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +LYVG++ +T D L +F G + +M D +GRS+ +GF+T S +E A+E Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 266 LNDTEVGGRKIKV-NVTESFLPNIDASAPESE 358 LN E+ GR ++V +VTE D + P+ + Sbjct: 324 LNGFELAGRPMRVGHVTERLDGGTDITFPDGD 355 Score = 55.1 bits (131), Expect = 2e-07 Identities = 43/180 (23%), Positives = 77/180 (42%) Frame = +2 Query: 62 APEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAE 241 +PEE R ++ + + +L F+A G V ++ D+ S RS+ +V + Sbjct: 159 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 218 Query: 242 EVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 421 V AI L + G I V +++ + A A + ++YVG+L +T Sbjct: 219 SVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGN-GGPMRLYVGSLHFNITE 276 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 ++L+ F G++ + + + T +SKGYG N EL G+ +RV Sbjct: 277 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 58.9 bits (141), Expect = 1e-08 Identities = 38/142 (26%), Positives = 71/142 (50%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L V +P+ +T DE ++F + G + +++ DK +G+S +GFV S + AI +L Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N ++ + IKV+ A S S D+ +YV L K ++ + ++ FS+ Sbjct: 101 NGLKLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQ 147 Query: 449 KGEVLSATVSRIPGTPKSKGYG 514 G ++++ + T S+G G Sbjct: 148 YGRIITSRILVDQVTGVSRGVG 169 Score = 47.8 bits (112), Expect = 3e-05 Identities = 21/80 (26%), Positives = 41/80 (51%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 K + S + + LYV +P+T++ E+ +F+ +G ++ + ++ D+ +G SR Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG 167 Query: 212 FGFVTMSTAEEVAAAIESLN 271 GF+ E AI+ LN Sbjct: 168 VGFIRFDKRIEAEEAIKGLN 187 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/77 (32%), Positives = 40/77 (51%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L +F G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 269 NDTEVGGRKIKVNVTES 319 N +G R ++V+ S Sbjct: 346 NGYRLGERVLQVSFKTS 362
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 58.9 bits (141), Expect = 1e-08 Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 1/181 (0%) Frame = +2 Query: 71 ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVA 250 ++ T +++ N+ + N L F+A G ++ +V D+ G ++ +GFV + E Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESAN 222 Query: 251 AAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEV 427 AAIE +N + +K+ V ++ +S+ + + + VY+ NL ++T + Sbjct: 223 AAIEHVNGMLLNDKKVYVG------HHVSRRERQSKVEALKANFTNVYIKNLDTEITEQE 276 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNR 607 + F + GE+ S ++ + K +G+G N+ E +G+ + V R Sbjct: 277 FSDLFGQFGEITSLSLVK-DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGR 335 Query: 608 A 610 A Sbjct: 336 A 336 Score = 55.5 bits (132), Expect = 1e-07 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 5/176 (2%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N+ +T E S +F G + ++ D+ + + R FGFV + E A++ L Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 ND E G+K+ V + + E ++ K +++ NL +V E LK Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 FS G + SA + KSKG+G N L G+ + V Sbjct: 382 AEFSAFGTITSAKI-MTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436 Score = 51.2 bits (121), Expect = 3e-06 Identities = 25/76 (32%), Positives = 45/76 (59%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L++ N+ V ++ L A F+A GT+ A++M D+ G+S+ FGFV +T EE A+ + Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTEM 424 Query: 269 NDTEVGGRKIKVNVTE 316 N + G+ + V + + Sbjct: 425 NQRMLAGKPLYVALAQ 440 Score = 49.7 bits (117), Expect = 8e-06 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 1/159 (0%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 ASS + + LYVG + +VT L +F + G V V D + RS + + Sbjct: 66 ASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY 125 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD-SQYKVYVG 397 V E+ A++ LN T + GR ++ + + +PS V++ Sbjct: 126 VNFHNMEDGEKALDELNYTLIKGRPCRIMWS------------QRDPSLRKMGTGNVFIK 173 Query: 398 NLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 NL + + L + FS G++LS V+ + +KGYG Sbjct: 174 NLDPAIDNKALHDTFSAFGKILSCKVA-VDELGNAKGYG 211
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 58.5 bits (140), Expect = 2e-08 Identities = 49/186 (26%), Positives = 76/186 (40%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+GN+ VT+ L + G VV + D+ FGF ++V A + L Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N ++ G+ I+VN AS + + + ++VGNL V VL + FS Sbjct: 73 NQVKLFGKPIRVN---------RASQDRGVNTLIGA--NLFVGNLDPLVDERVLYDTFSA 121 Query: 449 KGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA*T*QKF 628 G+++ A +SKGYG NN L + I V+ A F Sbjct: 122 LGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYA-----F 176 Query: 629 RTGGKG 646 + GKG Sbjct: 177 KREGKG 182
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 58.2 bits (139), Expect = 2e-08 Identities = 42/157 (26%), Positives = 75/157 (47%) Frame = +2 Query: 44 SSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFV 223 SS V E + L +P+ +T +EL ++F + G + +++ DK +G+S +GFV Sbjct: 26 SSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 85 Query: 224 TMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNL 403 ++ AI +LN + + IKV+ A S S D+ +YV L Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGL 132 Query: 404 AKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K +T + L+ FS+ G ++++ + T S+G G Sbjct: 133 PKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG 169 Score = 52.0 bits (123), Expect = 2e-06 Identities = 26/97 (26%), Positives = 46/97 (47%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + + LYV +P+T+T EL +F+ +G ++ + ++ D+ +G Sbjct: 104 RLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNV 310 SR GF+ E AI+ LN + G + V Sbjct: 164 ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITV 200 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/73 (34%), Positives = 39/73 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L MF G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 269 NDTEVGGRKIKVN 307 N +G R ++V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 37.7 bits (86), Expect = 0.030 Identities = 26/94 (27%), Positives = 41/94 (43%) Frame = +2 Query: 329 NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKG 508 N + S+P + DS+ + L + +T E LK+ F GE+ S + R T +S G Sbjct: 22 NNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 509 YGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 YG N L+ +TI+V+ A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 58.2 bits (139), Expect = 2e-08 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 3/137 (2%) Frame = +2 Query: 59 EAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTA 238 + + +T KL+VG++PRT T +E+ F HG V+ ++ DK +G+ + FV +T+ Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171 Query: 239 EEVAAAIESLND--TEVGGR-KIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAK 409 ++ AI +L++ T GG ++V + I ++K++VG+L K Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGT-----------LEFKLFVGSLNK 220 Query: 410 KVTTEVLKNFFSEKGEV 460 + T + ++ F + G V Sbjct: 221 QATEKEVEEIFLQFGHV 237 Score = 42.7 bits (99), Expect = 0.001 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG++ + T E+ +F G V +M D+Y +SR GFV S+ E AAI+ Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDG 270 Query: 266 LNDT 277 LN T Sbjct: 271 LNGT 274
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 58.2 bits (139), Expect = 2e-08 Identities = 28/78 (35%), Positives = 46/78 (58%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 + +VG + +++L F+ G V+ ++++ D+ SGRSR FGFVT + + AIE Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66 Query: 266 LNDTEVGGRKIKVNVTES 319 +N E+ GR I VN +S Sbjct: 67 MNGKELDGRVITVNEAQS 84 Score = 42.7 bits (99), Expect = 0.001 Identities = 26/90 (28%), Positives = 42/90 (46%) Frame = +2 Query: 377 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXX 556 +Y+ +VG LA E L+ FS+ G+V+ + + + +S+G+G Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64 Query: 557 XXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N EL+G+ I VN A Q +GG G Sbjct: 65 EEMNGKELDGRVITVNEA---QSRGSGGGG 91
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 58.2 bits (139), Expect = 2e-08 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 1/145 (0%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 RKL++G + T + L + G + VM D S RSR FGFVT S EV AA+ Sbjct: 9 RKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS 68 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 + T + GR ++ P + ES +P + K++VG + + L+ + Sbjct: 69 ARPHT-IDGRVVE--------PKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREY 119 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYG 514 F E G++ S + + K +G+G Sbjct: 120 FEEYGKIESTEIITDKQSGKKRGFG 144 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 + +KL+VG I L F +G + E++ DK SG+ R FGFVT + + V Sbjct: 97 VTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPV 154
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 57.8 bits (138), Expect = 3e-08 Identities = 45/174 (25%), Positives = 73/174 (41%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 T KL++GN+ EL A+F +GTVV +V+ + +GFV M T ++ AI Sbjct: 6 TFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAI 57 Query: 260 ESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 ++LN + IKV +S AP + + K++VGNL K ++ Sbjct: 58 QNLNGYTLNEFAIKVEAAKS------RRAPNTPTT------KIFVGNLTDKTRAPEVREL 105 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 F + G V+ + R YG N ++GQ ++V Sbjct: 106 FQKYGTVVECDIVR--------NYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV 151
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 57.8 bits (138), Expect = 3e-08 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Frame = +2 Query: 38 LASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFG 217 +A V + + + R ++VGNIP T ++L +F+ G VV ++YD+ +G+ + +G Sbjct: 1 MAGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 60 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTES-----FLPNIDASAPESEPSFVDS 376 F E +A+ +LN E GR ++V+ S L ++ AP E + +S Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGES 118 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/91 (32%), Positives = 41/91 (45%) Frame = +2 Query: 338 ASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGX 517 A P +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 2 AGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGF 61 Query: 518 XXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 N E G+ +RV+ A Sbjct: 62 CEYQDQETALSAMRNLNGREFSGRALRVDNA 92
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 57.8 bits (138), Expect = 3e-08 Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ +++ N L F+A G ++ +V+ D+ S+ +GFV T E AI+ + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + RK+ V +S E+E ++ VY+ N + + E LK +F Sbjct: 159 NGMLLNDRKVFVGRFKS------RKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFG 212 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G LS V KS+G+G N +L G+ I V RA Sbjct: 213 QYGAALSVKV-MTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRA 266 Score = 54.7 bits (130), Expect = 2e-07 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + ++ L F +G + +VM D + G+SR FGFV+ E+ A++ + Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N ++ G+ I V + + + E D ++Y+ +YV NL + E L+ Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 F+ G + SA V G +SKG+G Sbjct: 312 KEFTPFGSITSAKVMMEGG--RSKGFG 336 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV N+ + ++ L F G++ A+VM + GRS+ FGFV S+ EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 269 NDTEVGGRKIKVNVTE 316 N V + + V + + Sbjct: 354 NGRIVATKPLYVALAQ 369
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 57.8 bits (138), Expect = 3e-08 Identities = 35/143 (24%), Positives = 66/143 (46%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + T D L F +GTV ++M D +GRSR FGF++ V +++ Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 ++ + + + + P E D K++VG + V + + FFS Sbjct: 220 ------------QHILDGKVIDPKRAIPRDEQ---DKTGKIFVGGIGPDVRPKEFEEFFS 264 Query: 446 EKGEVLSATVSRIPGTPKSKGYG 514 + G ++ A + T +S+G+G Sbjct: 265 QWGTIIDAQLMLDKDTGQSRGFG 287 Score = 52.0 bits (123), Expect = 2e-06 Identities = 31/95 (32%), Positives = 50/95 (52%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 KV+ + E+ T K++VG I V E F+ GT++ A++M DK +G+SR Sbjct: 226 KVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRG 285 Query: 212 FGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTE 316 FGFVT +A+ V ++ + RKI++ E Sbjct: 286 FGFVTYDSADAVDRVCQN-KFIDFKDRKIEIKRAE 319
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 57.8 bits (138), Expect = 3e-08 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ ++ N L F+A G ++ +V+ D+Y SR +GFV T E AI+++ Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSF---VDSQYKVYVGNLAKKVTTEVLKNF 439 N + RK+ V + S E E + V VY+ N + + + LK Sbjct: 159 NGMLLNDRKVFVGHFK--------SRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEI 210 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 FS G LS V + + +S+G+G N E+ G+ + V RA Sbjct: 211 FSAFGNTLSVKV-MMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA 266 Score = 57.0 bits (136), Expect = 5e-08 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + + L +F+A G + +VM D SGRSR FGFV EE A+ + Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N EV GR + V + + + E + ++Y+ +YV NL + + L+ Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + S V G SKG+G Sbjct: 312 KEFSPYGTITSTKVMTEGG--HSKGFG 336 Score = 33.5 bits (75), Expect = 0.57 Identities = 23/89 (25%), Positives = 36/89 (40%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +Y+G+L VT +L FS G ++S V R T +S GY Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 566 NNTELEGQTIRVNRA*T*QKFRTGGKGRI 652 N ++G+ IR+ + R G G + Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNV 101
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 57.4 bits (137), Expect = 4e-08 Identities = 27/90 (30%), Positives = 50/90 (55%) Frame = +2 Query: 38 LASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFG 217 +A V + + + R ++VGNIP T ++L +F+ G VV ++YD+ +G+ + +G Sbjct: 1 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 60 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRKIKVN 307 F E +A+ +LN E GR ++V+ Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVD 90 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 535 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 536 XXXXXXXXXXNNTELEGQTIRVNRA 610 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 57.4 bits (137), Expect = 4e-08 Identities = 38/142 (26%), Positives = 70/142 (49%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L V +P+ +T +E ++F + G + +++ DK +G+S +GFV ++ AI +L Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N + + IKV+ A S S D+ +YV L K +T + L+ FS+ Sbjct: 101 NGLRLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQ 147 Query: 449 KGEVLSATVSRIPGTPKSKGYG 514 G ++++ + T S+G G Sbjct: 148 YGRIITSRILVDQVTGVSRGVG 169 Score = 52.8 bits (125), Expect = 9e-07 Identities = 26/97 (26%), Positives = 46/97 (47%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + + LYV +P+T+T EL +F+ +G ++ + ++ D+ +G Sbjct: 104 RLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNV 310 SR GF+ E AI+ LN + G + V Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 200 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L +F G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 269 NDTEVGGRKIKVN 307 N +G R ++V+ Sbjct: 352 NGYRLGDRVLQVS 364 Score = 34.3 bits (77), Expect = 0.33 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 DS+ + V L + +T E ++ F GE+ S + R T +S GYG Sbjct: 36 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95 Query: 551 XXXXXNNTELEGQTIRVNRA 610 N L+ +TI+V+ A Sbjct: 96 AINTLNGLRLQTKTIKVSYA 115
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 57.4 bits (137), Expect = 4e-08 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Frame = +2 Query: 62 APE--ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 APE E L+V I + DEL +F+ GTV +M + + SR FGF++ ST Sbjct: 92 APEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151 Query: 236 AEEVAAAIESLNDTEVGGRKIKVNVTESFLPN 331 EE +AI++LN E GR + V + P+ Sbjct: 152 VEEATSAIDNLNSQEFYGRVLNVQKAKRSRPH 183
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 57.4 bits (137), Expect = 4e-08 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + + L +F+A G + +VM D +GRSR FGFV EE A+ + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N EV GR I V + + + E + ++Y+ +YV NL + + L+ Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + SA V G SKG+G Sbjct: 312 KEFSPYGTITSAKVMTEGG--HSKGFG 336 Score = 57.4 bits (137), Expect = 4e-08 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ ++ N L F+A G ++ +V+ D++ SR +GFV T E AI+++ Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSF---VDSQYKVYVGNLAKKVTTEVLKNF 439 N + RK+ V + S E E + V VY+ N + + + L+ Sbjct: 159 NGMLLNDRKVFVGHFK--------SRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 FS G LS V + T +S+G+G N E+ G+ I V RA Sbjct: 211 FSAFGNTLSVKV-MMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266 Score = 33.9 bits (76), Expect = 0.43 Identities = 24/89 (26%), Positives = 36/89 (40%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +YVG+L VT +L FS G ++S V R T +S GY Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 566 NNTELEGQTIRVNRA*T*QKFRTGGKGRI 652 N ++G+ IR+ + R G G + Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNV 101
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 57.4 bits (137), Expect = 4e-08 Identities = 38/142 (26%), Positives = 70/142 (49%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L V +P+ +T +E ++F + G + +++ DK +G+S +GFV ++ AI +L Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N + + IKV+ A S S D+ +YV L K +T + L+ FS+ Sbjct: 108 NGLRLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQ 154 Query: 449 KGEVLSATVSRIPGTPKSKGYG 514 G ++++ + T S+G G Sbjct: 155 YGRIITSRILVDQVTGVSRGVG 176 Score = 52.8 bits (125), Expect = 9e-07 Identities = 26/97 (26%), Positives = 46/97 (47%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + + LYV +P+T+T EL +F+ +G ++ + ++ D+ +G Sbjct: 111 RLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 170 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNV 310 SR GF+ E AI+ LN + G + V Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 207 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L +F G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 269 NDTEVGGRKIKVN 307 N +G R ++V+ Sbjct: 359 NGYRLGDRVLQVS 371 Score = 34.3 bits (77), Expect = 0.33 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 DS+ + V L + +T E ++ F GE+ S + R T +S GYG Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 102 Query: 551 XXXXXNNTELEGQTIRVNRA 610 N L+ +TI+V+ A Sbjct: 103 AINTLNGLRLQTKTIKVSYA 122
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 57.4 bits (137), Expect = 4e-08 Identities = 27/90 (30%), Positives = 50/90 (55%) Frame = +2 Query: 38 LASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFG 217 +A V + + + R ++VGNIP T ++L +F+ G VV ++YD+ +G+ + +G Sbjct: 1 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 60 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRKIKVN 307 F E +A+ +LN E GR ++V+ Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVD 90 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 535 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 536 XXXXXXXXXXNNTELEGQTIRVNRA 610 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 57.4 bits (137), Expect = 4e-08 Identities = 27/90 (30%), Positives = 50/90 (55%) Frame = +2 Query: 38 LASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFG 217 +A V + + + R ++VGNIP T ++L +F+ G VV ++YD+ +G+ + +G Sbjct: 1 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG 60 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRKIKVN 307 F E +A+ +LN E GR ++V+ Sbjct: 61 FCEYQDQETALSAMRNLNGREFSGRALRVD 90 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/85 (32%), Positives = 39/85 (45%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXX 535 +P+ S V+VGN+ + T E LK+ FSE G V+S + T K KGYG Sbjct: 8 DPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 536 XXXXXXXXXXNNTELEGQTIRVNRA 610 N E G+ +RV+ A Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNA 92
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 57.4 bits (137), Expect = 4e-08 Identities = 27/65 (41%), Positives = 43/65 (66%) Frame = +2 Query: 125 DELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKV 304 + L + F+ +G V+ ++++ D+ + RSR FGFVT ST E + +AIE +N E+ GR I V Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60 Query: 305 NVTES 319 N +S Sbjct: 61 NEAQS 65 Score = 33.9 bits (76), Expect = 0.43 Identities = 19/61 (31%), Positives = 27/61 (44%) Frame = +2 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNR 607 L + FS GEVL + + T +S+G+G N EL+G+ I VN Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62 Query: 608 A 610 A Sbjct: 63 A 63
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 57.4 bits (137), Expect = 4e-08 Identities = 38/142 (26%), Positives = 70/142 (49%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L V +P+ +T +E ++F + G + +++ DK +G+S +GFV ++ AI +L Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N + + IKV+ A S S D+ +YV L K +T + L+ FS+ Sbjct: 113 NGLRLQTKTIKVSY-----------ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQ 159 Query: 449 KGEVLSATVSRIPGTPKSKGYG 514 G ++++ + T S+G G Sbjct: 160 YGRIITSRILVDQVTGVSRGVG 181 Score = 52.8 bits (125), Expect = 9e-07 Identities = 26/97 (26%), Positives = 46/97 (47%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG 199 R K + S + + LYV +P+T+T EL +F+ +G ++ + ++ D+ +G Sbjct: 116 RLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 175 Query: 200 RSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNV 310 SR GF+ E AI+ LN + G + V Sbjct: 176 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 212 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V N+ L +F G V +V+ D + + + FGFVTM+ +E A AI SL Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 269 NDTEVGGRKIKVN 307 N +G R ++V+ Sbjct: 364 NGYRLGDRVLQVS 376 Score = 34.3 bits (77), Expect = 0.33 Identities = 22/80 (27%), Positives = 35/80 (43%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 DS+ + V L + +T E ++ F GE+ S + R T +S GYG Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 107 Query: 551 XXXXXNNTELEGQTIRVNRA 610 N L+ +TI+V+ A Sbjct: 108 AINTLNGLRLQTKTIKVSYA 127
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 57.0 bits (136), Expect = 5e-08 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 1/175 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ +++ N L F+A G ++ +V+ D+ S+ +GFV T E AI+ + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFS 445 N + RK+ V +S E+E ++ VY+ N + E LK F Sbjct: 159 NGMLLNDRKVFVGRFKS------RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG 212 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 + G LS V KSKG+G N ++ G+++ V RA Sbjct: 213 KYGPALSVKV-MTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRA 266 Score = 52.4 bits (124), Expect = 1e-06 Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + ++ L MF +G + +VM D +G+S+ FGFV+ E+ A++ + Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N ++ G+ + V + + + E D ++Y+ +YV NL + E L+ Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 F G + SA V G +SKG+G Sbjct: 312 KEFLPFGTITSAKVMMEGG--RSKGFG 336 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/76 (32%), Positives = 40/76 (52%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 LYV N+ + ++ L F GT+ A+VM + GRS+ FGFV S+ EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 269 NDTEVGGRKIKVNVTE 316 N V + + V + + Sbjct: 354 NGRIVATKPLYVALAQ 369
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 E+L LYV N+ R++T+++L +F +G +V+ ++ DK++G R F+ + EE Sbjct: 159 EQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEA 218 Query: 248 AAAIESLNDT--EVGGRKIKVNVTE 316 AI +LN+ E G + + V V E Sbjct: 219 QEAISALNNVIPEGGTQPLTVRVAE 243 Score = 55.5 bits (132), Expect = 1e-07 Identities = 41/168 (24%), Positives = 69/168 (41%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L V +P+ + + EL ++F G + +M D +G S +GFV + + AI +L Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N V ++IKV+ + P E +YV NL++ +T E L+ F + Sbjct: 140 NGITVRNKRIKVSF----------ARPGGEQL---RDTNLYVTNLSRSITDEQLETIFGK 186 Query: 449 KGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQT 592 G+++ + R T +G NN EG T Sbjct: 187 YGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGT 234
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 57.0 bits (136), Expect = 5e-08 Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 1/150 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T+D L F G + VM D + RSR FGFVT S EE Sbjct: 23 PEQL--RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEE 80 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTT 421 V A++ S +V GR ++ P S +S P + K++VG + + Sbjct: 81 VDASM-SARPHKVDGRVVE--------PKRAVSREDSARPGAHLTVKKIFVGGIKEDTEE 131 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 L+++F G++ + V + K +G+ Sbjct: 132 YHLRDYFEGYGKIETIEVMEDRQSGKKRGF 161 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 L +K++VG I L F +G + EVM D+ SG+ R F FVT + V Sbjct: 115 LTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 172 Score = 37.0 bits (84), Expect = 0.051 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 EP + K+++G L+ + T + L+ F + G++ V R P T +S+G+G Sbjct: 19 EPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 56.6 bits (135), Expect = 6e-08 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 1/144 (0%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 RKL++G + T + L + GT+ VM D S RSR FGFVT S EV AA+ Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA 68 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 + T + GR ++ P + ES +P + K++VG + + L+ + Sbjct: 69 TRPHT-IDGRVVE--------PKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREY 119 Query: 440 FSEKGEVLSATVSRIPGTPKSKGY 511 F E G++ S + + K +G+ Sbjct: 120 FEEYGKIDSIEIITDKQSGKKRGF 143 Score = 39.3 bits (90), Expect = 0.010 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 + +KL+VG I L F +G + E++ DK SG+ R F FVT + V Sbjct: 97 VTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPV 154 Score = 37.7 bits (86), Expect = 0.030 Identities = 18/76 (23%), Positives = 37/76 (48%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K+++G L+ + T E L+N++ + G + V R P + +S+G+G Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 563 XNNTELEGQTIRVNRA 610 +T ++G+ + RA Sbjct: 70 RPHT-IDGRVVEPKRA 84
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 56.6 bits (135), Expect = 6e-08 Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 8/199 (4%) Frame = +2 Query: 29 VKVLASSAVMEAPE------ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDK 190 +KV + +E P+ E R L N+P VT DEL +F AE+ Sbjct: 370 LKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFED-----AAEIRLVS 424 Query: 191 YSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFV 370 G+S+ ++ T + E TE+ GR I + T N D ++ Sbjct: 425 KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSG 484 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXX 544 +S+ V + NL+ T E L+ F + AT ++P KSKGY Sbjct: 485 ESKTLV-LSNLSYSATEETLQEVFEK------ATFIKVPQNQNGKSKGYAFIEFASFEDA 537 Query: 545 XXXXXXXNNTELEGQTIRV 601 N E+EG+ IR+ Sbjct: 538 KEALNSCNKREIEGRAIRL 556 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/76 (30%), Positives = 42/76 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 ++ L+V + T + L F VRA ++ D+ +G S+ FGFV ++ E+ AA Sbjct: 572 SKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 628 Query: 260 ESLNDTEVGGRKIKVN 307 E++ D E+ G K+ ++ Sbjct: 629 EAMEDGEIDGNKVTLD 644 Score = 44.7 bits (104), Expect = 2e-04 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 5/208 (2%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDEL----SAMFAAHGTVVRAEVMYDKYSGRSR 208 A +E E L+VGN+ + EL S +FA + V D G +R Sbjct: 294 AKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAV-----VDVRIGMTR 348 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKV 388 +FG+V +AE++ A+E L +V G +IK+ P+ + S + + Sbjct: 349 KFGYVDFESAEDLEKALE-LTGLKVFGNEIKL------------EKPKGKDSKKERDART 395 Query: 389 YVG-NLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 + NL KVT + LK F + +A + + KSKG Sbjct: 396 LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEK 450 Query: 566 NNTELEGQTIRVNRA*T*QKFRTGGKGR 649 TE++G++I + + TG KG+ Sbjct: 451 QGTEIDGRSISL--------YYTGEKGQ 470
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 56.6 bits (135), Expect = 6e-08 Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+ N + + L +F+A G + +VM D SGRSR FGFV EE A+ + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD--SQYK---VYVGNLAKKVTTEVLK 433 N EV GR I V + + + E + ++Y+ +YV NL + + L+ Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 F G + SA V G SKG+G Sbjct: 312 KEFLPYGTITSAKVMTEGG--HSKGFG 336 Score = 55.5 bits (132), Expect = 1e-07 Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 3/177 (1%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++ N+ ++ N L F+A G ++ +V+ D++ SR +GFV T E AI+++ Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSF---VDSQYKVYVGNLAKKVTTEVLKNF 439 N + RK+ V + S E E + V VY+ N + + + L+ Sbjct: 159 NGMLLNDRKVFVGHFK--------SRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREI 210 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 FS G LS V + + +S+G+G N E+ G+ I V RA Sbjct: 211 FSAFGNTLSVKV-MMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA 266
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 56.6 bits (135), Expect = 6e-08 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 1/187 (0%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +YVG + V+ L + G VV + D+ + + FGFV E+ AI+ L Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 N ++ G+ IKVN + N+D A ++VGNL +V ++L + FS Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMDVGA------------NIFVGNLDPEVDEKLLYDTFSA 122 Query: 449 KGEVLSA-TVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA*T*QK 625 G +L + R + SKG+ N L + I V+ A Sbjct: 123 FGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA----- 177 Query: 626 FRTGGKG 646 F+ KG Sbjct: 178 FKRDSKG 184
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 56.6 bits (135), Expect = 6e-08 Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 8/199 (4%) Frame = +2 Query: 29 VKVLASSAVMEAPE------ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDK 190 +KV + +E P+ E R L N+P VT DEL +F AE+ Sbjct: 369 LKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFED-----AAEIRLVS 423 Query: 191 YSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFV 370 G+S+ ++ T + E TE+ GR I + T N D ++ Sbjct: 424 KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSG 483 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXX 544 +S+ V + NL+ T E L+ F + AT ++P KSKGY Sbjct: 484 ESKTLV-LSNLSYSATEETLQEVFEK------ATFIKVPQNQNGKSKGYAFIEFASFEDA 536 Query: 545 XXXXXXXNNTELEGQTIRV 601 N E+EG+ IR+ Sbjct: 537 KEALNSCNKREIEGRAIRL 555 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/76 (30%), Positives = 42/76 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 ++ L+V + T + L F VRA ++ D+ +G S+ FGFV ++ E+ AA Sbjct: 571 SKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 627 Query: 260 ESLNDTEVGGRKIKVN 307 E++ D E+ G K+ ++ Sbjct: 628 EAMEDGEIDGNKVTLD 643 Score = 44.7 bits (104), Expect = 2e-04 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 5/208 (2%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDEL----SAMFAAHGTVVRAEVMYDKYSGRSR 208 A +E E L+VGN+ + EL S +FA + V D G +R Sbjct: 293 AKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAV-----VDVRIGMTR 347 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKV 388 +FG+V +AE++ A+E L +V G +IK+ P+ + S + + Sbjct: 348 KFGYVDFESAEDLEKALE-LTGLKVFGNEIKL------------EKPKGKDSKKERDART 394 Query: 389 YVG-NLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 + NL KVT + LK F + +A + + KSKG Sbjct: 395 LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEK 449 Query: 566 NNTELEGQTIRVNRA*T*QKFRTGGKGR 649 TE++G++I + + TG KG+ Sbjct: 450 QGTEIDGRSISL--------YYTGEKGQ 469
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 56.6 bits (135), Expect = 6e-08 Identities = 51/199 (25%), Positives = 78/199 (39%), Gaps = 8/199 (4%) Frame = +2 Query: 29 VKVLASSAVMEAPE------ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDK 190 +KV + +E P+ E R L N+P VT DEL +F AE+ Sbjct: 368 LKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFED-----AAEIRLVS 422 Query: 191 YSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFV 370 G+S+ ++ T + E TE+ GR I + T N D ++ Sbjct: 423 KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSG 482 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXX 544 +S+ V + NL+ T E L+ F + AT ++P KSKGY Sbjct: 483 ESKTLV-LSNLSYSATEETLQEVFEK------ATFIKVPQNQNGKSKGYAFIEFASFEDA 535 Query: 545 XXXXXXXNNTELEGQTIRV 601 N E+EG+ IR+ Sbjct: 536 KEALNSCNKREIEGRAIRL 554 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/76 (30%), Positives = 42/76 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 ++ L+V + T + L F VRA ++ D+ +G S+ FGFV ++ E+ AA Sbjct: 570 SKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 626 Query: 260 ESLNDTEVGGRKIKVN 307 E++ D E+ G K+ ++ Sbjct: 627 EAMEDGEIDGNKVTLD 642 Score = 44.7 bits (104), Expect = 2e-04 Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 5/208 (2%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDEL----SAMFAAHGTVVRAEVMYDKYSGRSR 208 A +E E L+VGN+ + EL S +FA + V D G +R Sbjct: 292 AKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAV-----VDVRIGMTR 346 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKV 388 +FG+V +AE++ A+E L +V G +IK+ P+ + S + + Sbjct: 347 KFGYVDFESAEDLEKALE-LTGLKVFGNEIKL------------EKPKGKDSKKERDART 393 Query: 389 YVG-NLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 + NL KVT + LK F + +A + + KSKG Sbjct: 394 LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEK 448 Query: 566 NNTELEGQTIRVNRA*T*QKFRTGGKGR 649 TE++G++I + + TG KG+ Sbjct: 449 QGTEIDGRSISL--------YYTGEKGQ 468
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 56.2 bits (134), Expect = 8e-08 Identities = 27/78 (34%), Positives = 45/78 (57%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 + +VG + + L FA +G V+ ++++ D+ +GRSR FGFVT + + AIE Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 266 LNDTEVGGRKIKVNVTES 319 +N ++ GR I VN +S Sbjct: 69 MNGQDLDGRSITVNEAQS 86 Score = 43.1 bits (100), Expect = 7e-04 Identities = 25/92 (27%), Positives = 43/92 (46%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 D +Y+ +VG LA L+ F++ G+V+ + + T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64 Query: 551 XXXXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N +L+G++I VN A Q +GG G Sbjct: 65 AIEGMNGQDLDGRSITVNEA---QSRGSGGGG 93
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 56.2 bits (134), Expect = 8e-08 Identities = 31/90 (34%), Positives = 48/90 (53%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KLY+G + L F++ V A VM +K +GRSR +GFV + + +AI + Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPES 355 +N E+ G I VNV + + P++ S ES Sbjct: 92 MNGQELNGFNISVNVAKDW-PSLPLSLDES 120 Score = 37.4 bits (85), Expect = 0.039 Identities = 24/76 (31%), Positives = 30/76 (39%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K+Y+G L+ LK+ FS V A V T +S+GYG Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 563 XNNTELEGQTIRVNRA 610 N EL G I VN A Sbjct: 92 MNGQELNGFNISVNVA 107
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 56.2 bits (134), Expect = 8e-08 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 1/190 (0%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 ++ L V N+ + T D L +F + + GR++ F F+ S+AE+ A+ Sbjct: 413 SKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAM 467 Query: 260 ESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-VYVGNLAKKVTTEVLKN 436 +S N+TE+ GR I++ ++ P+ +Q K ++V L++ T E LK Sbjct: 468 DSCNNTEIEGRSIRLEFSQ-------GGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKE 520 Query: 437 FFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA*T 616 F ++A + T SKG+G + E++G + ++ A Sbjct: 521 AFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKP 577 Query: 617 *QKFRTGGKG 646 + GG+G Sbjct: 578 KGDSQRGGRG 587 Score = 40.4 bits (93), Expect = 0.005 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 2/174 (1%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++GN+ T DEL + + D G S++FG+V S+ EEV A++ L Sbjct: 234 IFIGNLNSTKEFDELKDALREFFSKKNLTIQ-DIRIGNSKKFGYVDFSSEEEVEKALK-L 291 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSE 448 ++ G ++K+ +F N A + S ++V N+ T E L+ F Sbjct: 292 TGKKILGTEVKIEKAMAFDKNKTAENKKERDS-----RTLFVKNIPYSTTVEELQEIFEN 346 Query: 449 KGEVLSATVSRIP--GTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVN 604 ++ RIP +KG E+EG++I V+ Sbjct: 347 AKDI------RIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVD 394
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 55.8 bits (133), Expect = 1e-07 Identities = 47/194 (24%), Positives = 86/194 (44%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE + RKL++G + T++ L A F G +V VM D + RSR FGF+T S + Sbjct: 27 PEHM--RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSM 84 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 + A +S ++ GR ++ + +P D +P + + K++VG L + Sbjct: 85 IDEAQKS-RPHKIDGRVVE---PKRAVPRQDIDSPNAGATV----KKLFVGALKDDHDEQ 136 Query: 425 VLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVN 604 ++++F G ++ + T K +G+ + +L G+ + V Sbjct: 137 SIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQH-QLNGKMVDVK 195 Query: 605 RA*T*QKFRTGGKG 646 +A Q + GG G Sbjct: 196 KALPKQNDQQGGGG 209 Score = 36.6 bits (83), Expect = 0.067 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = +2 Query: 335 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 D P+ + + K+++G L + T E LK F + G ++ V + P T +S+G+G Sbjct: 16 DDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFG 75
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 55.8 bits (133), Expect = 1e-07 Identities = 30/78 (38%), Positives = 44/78 (56%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAA 253 L + KL++G + + L FA G VV A+V+ D+ +GRSR FGFV + A Sbjct: 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATA 91 Query: 254 AIESLNDTEVGGRKIKVN 307 AI ++ E+ GR I+VN Sbjct: 92 AISEMDGKELNGRHIRVN 109 Score = 35.4 bits (80), Expect = 0.15 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K+++G L+ L++ F+ G+V+ A V T +S+G+G Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 563 XNNTELEGQTIRVNRA 610 + EL G+ IRVN A Sbjct: 96 MDGKELNGRHIRVNPA 111
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 55.8 bits (133), Expect = 1e-07 Identities = 42/172 (24%), Positives = 77/172 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++GN+PR T E+ ++F +G V+ +++ + +GFV + AI + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+ ++ G VN+ N++AS +S+ S K++VGN++ T + L+ F Sbjct: 55 LHHYKLHG----VNI------NVEASKNKSKAS-----TKLHVGNISPTCTNQELRAKFE 99 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E G V+ + K Y +NTE +G+ + V Sbjct: 100 EYGPVIECDI--------VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 55.8 bits (133), Expect = 1e-07 Identities = 42/172 (24%), Positives = 77/172 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++GN+PR T E+ ++F +G V+ +++ + +GFV + AI + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+ ++ G VN+ N++AS +S+ S K++VGN++ T + L+ F Sbjct: 55 LHHYKLHG----VNI------NVEASKNKSKAS-----TKLHVGNISPTCTNQELRAKFE 99 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E G V+ + K Y +NTE +G+ + V Sbjct: 100 EYGPVIECDI--------VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 55.8 bits (133), Expect = 1e-07 Identities = 30/89 (33%), Positives = 48/89 (53%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R LYVG + V + L A F G + ++ D + + R F FV AE+ AAAI+ Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAP 349 ++N++E+ GR I+VN+ + +S P Sbjct: 66 NMNESELFGRTIRVNLAKPMRIKEGSSRP 94 Score = 38.1 bits (87), Expect = 0.023 Identities = 23/75 (30%), Positives = 34/75 (45%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +YVG LA++V +VL F G++ + T K +G+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 566 NNTELEGQTIRVNRA 610 N +EL G+TIRVN A Sbjct: 68 NESELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 55.8 bits (133), Expect = 1e-07 Identities = 30/89 (33%), Positives = 48/89 (53%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R LYVG + V + L A F G + ++ D + + R F FV AE+ AAAI+ Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAP 349 ++N++E+ GR I+VN+ + +S P Sbjct: 66 NMNESELFGRTIRVNLAKPMRIKEGSSRP 94 Score = 38.1 bits (87), Expect = 0.023 Identities = 23/75 (30%), Positives = 34/75 (45%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +YVG LA++V +VL F G++ + T K +G+ Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 566 NNTELEGQTIRVNRA 610 N +EL G+TIRVN A Sbjct: 68 NESELFGRTIRVNLA 82
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 55.8 bits (133), Expect = 1e-07 Identities = 35/115 (30%), Positives = 58/115 (50%) Frame = +2 Query: 56 MEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 +E E R +YVGN+ T +EL A F G+V R ++ DK+SG + F ++ S Sbjct: 158 LEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 217 Query: 236 AEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGN 400 E V ++ +L+++ GR+IKV + P I ++ F S+Y+ N Sbjct: 218 KESVRTSL-ALDESLFRGRQIKVIPKRTNRPGIST----TDRGFPRSRYRARTTN 267
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 55.8 bits (133), Expect = 1e-07 Identities = 42/172 (24%), Positives = 77/172 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++GN+PR T E+ ++F +G V+ +++ + +GFV + AI + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+ ++ G VN+ N++AS +S+ S K++VGN++ T + L+ F Sbjct: 55 LHHYKLHG----VNI------NVEASKNKSKAS-----TKLHVGNISPTCTNQELRAKFE 99 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E G V+ + K Y +NTE +G+ + V Sbjct: 100 EYGPVIECDI--------VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 55.8 bits (133), Expect = 1e-07 Identities = 42/172 (24%), Positives = 77/172 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++GN+PR T E+ ++F +G V+ +++ + +GFV + AI + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+ ++ G VN+ N++AS +S+ S K++VGN++ T + L+ F Sbjct: 55 LHHYKLHG----VNI------NVEASKNKSKAS-----TKLHVGNISPTCTNQELRAKFE 99 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E G V+ + K Y +NTE +G+ + V Sbjct: 100 EYGPVIECDI--------VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 55.8 bits (133), Expect = 1e-07 Identities = 42/172 (24%), Positives = 77/172 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++GN+PR T E+ ++F +G V+ +++ + +GFV + AI + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+ ++ G VN+ N++AS +S+ S K++VGN++ T + L+ F Sbjct: 55 LHHYKLHG----VNI------NVEASKNKSKAS-----TKLHVGNISPTCTNQELRAKFE 99 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E G V+ + K Y +NTE +G+ + V Sbjct: 100 EYGPVIECDI--------VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 55.8 bits (133), Expect = 1e-07 Identities = 26/78 (33%), Positives = 44/78 (56%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 + +VG + ++ L F+ G + ++++ D+ +GRSR FGFVT + + AIE Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66 Query: 266 LNDTEVGGRKIKVNVTES 319 +N E+ GR I VN +S Sbjct: 67 MNGQELDGRNITVNEAQS 84 Score = 43.1 bits (100), Expect = 7e-04 Identities = 26/90 (28%), Positives = 41/90 (45%) Frame = +2 Query: 377 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXX 556 +Y+ +VG LA E L+ FS+ G++ + + T +S+G+G Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64 Query: 557 XXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N EL+G+ I VN A Q +GG G Sbjct: 65 EGMNGQELDGRNITVNEA---QSRGSGGGG 91
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 55.5 bits (132), Expect = 1e-07 Identities = 42/172 (24%), Positives = 77/172 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++GN+PR T E+ ++F +G V+ +++ + +GFV + AI + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+ ++ G VN+ N++AS +S+ S K++VGN++ T + L+ F Sbjct: 55 LHHYKLHG----VNI------NVEASKNKSKTS-----TKLHVGNISPTCTNKELRAKFE 99 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E G V+ + K Y +NTE +G+ + V Sbjct: 100 EYGPVIECDI--------VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 55.5 bits (132), Expect = 1e-07 Identities = 42/172 (24%), Positives = 77/172 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++GN+PR T E+ ++F +G V+ +++ + +GFV + AI + Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+ ++ G VN+ N++AS +S+ S K++VGN++ T + L+ F Sbjct: 55 LHHYKLHG----VNI------NVEASKNKSKTS-----TKLHVGNISPTCTNKELRAKFE 99 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E G V+ + K Y +NTE +G+ + V Sbjct: 100 EYGPVIECDI--------VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 55.5 bits (132), Expect = 1e-07 Identities = 35/112 (31%), Positives = 61/112 (54%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL V N+P VT E+ +F+A+G +V + K++ SR F F STA+E A S Sbjct: 705 KLVVKNLPFEVTKKEVRTLFSAYGKLVALRIP-KKFNQSSRGFAFAEFSTAKEALNAFNS 763 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 421 L DT + GR++ ++ ++ +ID PE + + ++ + + V +A + T Sbjct: 764 LKDTHILGRRLVIDFAQA--EDID---PEDQIAAMEKKTRAQVNKVALQQLT 810 Score = 38.9 bits (89), Expect = 0.014 Identities = 26/96 (27%), Positives = 46/96 (47%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 ++ +++V N+P T+T E F+A G V D +R GFV +AE+ A A Sbjct: 3 SSSRIFVKNLPPTITEAEFRKHFSAEGRQVT-----DVKLIPARHIGFVGYKSAEDAARA 57 Query: 257 IESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPS 364 ++ N + + +I V++ + P D+ PS Sbjct: 58 VKYFNRSFIRMSRISVDIAK---PIADSKPQHKSPS 90
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 55.5 bits (132), Expect = 1e-07 Identities = 30/89 (33%), Positives = 48/89 (53%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R +YVG + VT L+ F G + ++ D S R R F F+ +E+ AAAI+ Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAP 349 ++ND+E+ GR I+VN+ + D+ P Sbjct: 66 NMNDSELCGRTIRVNLAKPVRVKEDSFKP 94 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/75 (29%), Positives = 35/75 (46%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +YVG LA +VT +L N F G++ + + + +G+ Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 566 NNTELEGQTIRVNRA 610 N++EL G+TIRVN A Sbjct: 68 NDSELCGRTIRVNLA 82
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/78 (34%), Positives = 45/78 (57%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 + +VG + + EL F+ G V+ ++++ D+ +GRSR FGFVT + + AI+ Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66 Query: 266 LNDTEVGGRKIKVNVTES 319 +N E+ GR I VN +S Sbjct: 67 MNGKELDGRTITVNEAQS 84 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/90 (31%), Positives = 42/90 (46%) Frame = +2 Query: 377 QYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXX 556 +Y+ +VG LA L+ FS+ GEV+ + + T +S+G+G Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64 Query: 557 XXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N EL+G+TI VN A + R GG G Sbjct: 65 DEMNGKELDGRTITVNEA----QSRGGGGG 90
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 55.1 bits (131), Expect = 2e-07 Identities = 30/79 (37%), Positives = 45/79 (56%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R +V + T +L +F+ +G VV A+V+ + S +R +GFVTMSTAEE I Sbjct: 428 RNFWVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCIN 487 Query: 263 SLNDTEVGGRKIKVNVTES 319 L+ TE+ G+ I V +S Sbjct: 488 HLHKTELHGKMISVEKAKS 506 Score = 35.0 bits (79), Expect = 0.20 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +2 Query: 389 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXN 568 +V L+ LKN FS G+V+ A V +P ++ YG + Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 569 NTELEGQTIRVNRA 610 TEL G+ I V +A Sbjct: 491 KTELHGKMISVEKA 504
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 55.1 bits (131), Expect = 2e-07 Identities = 28/74 (37%), Positives = 45/74 (60%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R L+V + + +L ++F+ HG V+ A+V+ + S +R +GFVTMST++E I Sbjct: 451 RNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCIS 510 Query: 263 SLNDTEVGGRKIKV 304 L+ TE+ GR I V Sbjct: 511 HLHRTELHGRMISV 524 Score = 35.4 bits (80), Expect = 0.15 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 ++V L+ LK+ FS+ G+V+ A V +P ++ YG Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512 Query: 566 NNTELEGQTIRVNRA 610 + TEL G+ I V +A Sbjct: 513 HRTELHGRMISVEKA 527
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 55.1 bits (131), Expect = 2e-07 Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 1/196 (0%) Frame = +2 Query: 65 PEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 PE+L RKL++G + T+D L F G + VM D + RSR FGFVT S EE Sbjct: 23 PEQL--RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEE 80 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTT 421 V A++ S +V GR ++ P S +S P + K++VG + + Sbjct: 81 VDASM-SARPHKVDGRVVE--------PKRAVSREDSARPGAHLTVKKIFVGGIKEDTEE 131 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+++ G++ + V + K +G+ +T + G V Sbjct: 132 YHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEV 190 Query: 602 NRA*T*QKFRTGGKGR 649 +A + Q+ +T R Sbjct: 191 KKALSKQEMQTASAQR 206 Score = 35.8 bits (81), Expect = 0.11 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = +2 Query: 356 EPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 +P + K+++G L+ + T + L+ F + G++ V R P T +S+G+G Sbjct: 19 DPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFG 71
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 54.7 bits (130), Expect = 2e-07 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 1/145 (0%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 RKL++G + T + L + G + VM D S RSR FGFVT S+ EV AA+ Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM- 79 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 + + GR ++ P + ES +P + K++VG + + L+++ Sbjct: 80 AARPHSIDGRVVE--------PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDY 131 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYG 514 F E G++ + + + K +G+G Sbjct: 132 FEEYGKIDTIEIITDRQSGKKRGFG 156 Score = 40.0 bits (92), Expect = 0.006 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 + +KL+VG I L F +G + E++ D+ SG+ R FGFVT + V Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV 166
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 54.7 bits (130), Expect = 2e-07 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 1/145 (0%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 RKL++G + T + L + G + VM D S RSR FGFVT S+ EV AA+ Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM- 67 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAPES-EPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 + + GR ++ P + ES +P + K++VG + + L+++ Sbjct: 68 AARPHSIDGRVVE--------PKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDY 119 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYG 514 F E G++ + + + K +G+G Sbjct: 120 FEEYGKIDTIEIITDRQSGKKRGFG 144 Score = 40.0 bits (92), Expect = 0.006 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 + +KL+VG I L F +G + E++ D+ SG+ R FGFVT + V Sbjct: 97 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV 154
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/78 (33%), Positives = 45/78 (57%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 + +VG + + L F+ +G V+ ++++ D+ +GRSR FGFVT + + AIE Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 266 LNDTEVGGRKIKVNVTES 319 +N ++ GR I VN +S Sbjct: 69 MNGQDLDGRSITVNEAQS 86 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/92 (30%), Positives = 43/92 (46%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 D +Y+ +VG LA L+ FS+ GEVL + + T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 551 XXXXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N +L+G++I VN A Q +GG G Sbjct: 65 AIEGMNGQDLDGRSITVNEA---QSRGSGGGG 93
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/93 (32%), Positives = 51/93 (54%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 A+ + E PE L++ ++P+ + +L MF G VV A+V DK + S+ FGF Sbjct: 390 AAGSQKEGPEGA---NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 446 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTES 319 V+ AAI+S+N ++G +++KV + S Sbjct: 447 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 479 Score = 47.4 bits (111), Expect = 4e-05 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Frame = +2 Query: 71 ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG--RSRRFGFVTMSTAEE 244 +L K++VG +PRT + +L +F +G V ++ D+ +S+ FVT T + Sbjct: 12 DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRK- 70 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 AA+E+ N + V I +SE + K+++G ++KK T Sbjct: 71 --AALEAQNALH------NMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEN 122 Query: 425 VLKNFFSEKGEVLSATVSRIP 487 ++ FS G++ + R P Sbjct: 123 DIRVMFSSFGQIEECRILRGP 143
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/93 (32%), Positives = 51/93 (54%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 A+ + E PE L++ ++P+ + +L MF G VV A+V DK + S+ FGF Sbjct: 390 AAGSQKEGPEGA---NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF 446 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTES 319 V+ AAI+S+N ++G +++KV + S Sbjct: 447 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 479 Score = 47.8 bits (112), Expect = 3e-05 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 2/141 (1%) Frame = +2 Query: 71 ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG--RSRRFGFVTMSTAEE 244 +L K++VG +PRT + +L +F +G V V+ D+ +S+ FVT T + Sbjct: 12 DLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK- 70 Query: 245 VAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 AA+E+ N + V I +SE + K+++G ++KK T Sbjct: 71 --AALEAQNALH------NMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEN 122 Query: 425 VLKNFFSEKGEVLSATVSRIP 487 ++ FS G++ + R P Sbjct: 123 DIRVMFSSFGQIEECRILRGP 143
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 54.3 bits (129), Expect = 3e-07 Identities = 31/96 (32%), Positives = 51/96 (53%) Frame = +2 Query: 56 MEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 +E E R +YVGN+ T +EL A F G+V R ++ DK+SG + F ++ S Sbjct: 162 IEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 221 Query: 236 AEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDAS 343 E V ++ +L+++ GR+IKV + P I + Sbjct: 222 KESVRTSL-ALDESLFRGRQIKVIPKRTNRPGISTT 256
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 54.3 bits (129), Expect = 3e-07 Identities = 31/96 (32%), Positives = 51/96 (53%) Frame = +2 Query: 56 MEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 +E E R +YVGN+ T +EL A F G+V R ++ DK+SG + F ++ S Sbjct: 162 IEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSD 221 Query: 236 AEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDAS 343 E V ++ +L+++ GR+IKV + P I + Sbjct: 222 KESVRTSL-ALDESLFRGRQIKVIPKRTNRPGISTT 256
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/74 (39%), Positives = 44/74 (59%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R L+V + T +L +F+ +G VV A+V+ + S +R +GFVTMST++E I Sbjct: 407 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCIS 466 Query: 263 SLNDTEVGGRKIKV 304 L+ TE+ GR I V Sbjct: 467 HLHRTELHGRMISV 480 Score = 36.2 bits (82), Expect = 0.088 Identities = 21/75 (28%), Positives = 33/75 (44%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 ++V L+ LKN FS+ G+V+ A V +P ++ YG Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Query: 566 NNTELEGQTIRVNRA 610 + TEL G+ I V +A Sbjct: 469 HRTELHGRMISVEKA 483
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/74 (39%), Positives = 43/74 (58%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R +V + T +L +F+ +G VV A+V+ + S +R +GFVTMSTAEE I Sbjct: 406 RNFWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCIN 465 Query: 263 SLNDTEVGGRKIKV 304 L+ TE+ G+ I V Sbjct: 466 HLHKTELHGKMISV 479 Score = 35.4 bits (80), Expect = 0.15 Identities = 21/74 (28%), Positives = 32/74 (43%) Frame = +2 Query: 389 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXN 568 +V L+ LKN FS+ G+V+ A V +P ++ YG + Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 569 NTELEGQTIRVNRA 610 TEL G+ I V +A Sbjct: 469 KTELHGKMISVEKA 482
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 53.5 bits (127), Expect = 5e-07 Identities = 39/143 (27%), Positives = 64/143 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + T + L F G V VM D + RSR FGFVT V + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + E+ + I V A ++P V K++VG L+ T E +K++F Sbjct: 80 QSRHELDSKTIDPKV---------AFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFE 130 Query: 446 EKGEVLSATVSRIPGTPKSKGYG 514 + G+V A + T + +G+G Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFG 153 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/74 (28%), Positives = 41/74 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 T+K++VG + T +++ F G V A +M+DK + R R FGFVT +E++ + Sbjct: 108 TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE-SEDIVEKV 166 Query: 260 ESLNDTEVGGRKIK 301 ++ E+ + ++ Sbjct: 167 CEIHFHEINNKMVE 180 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = +2 Query: 332 IDASAPESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKS 502 ++ AP+ + DS + K+++G L+ + T E L+ +F + GEV V R P T +S Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60 Query: 503 KGYG 514 +G+G Sbjct: 61 RGFG 64
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 53.5 bits (127), Expect = 5e-07 Identities = 39/143 (27%), Positives = 64/143 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + T + L F G V VM D + RSR FGFVT V + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + E+ + I V A ++P V K++VG L+ T E +K++F Sbjct: 80 QSRHELDSKTIDPKV---------AFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFE 130 Query: 446 EKGEVLSATVSRIPGTPKSKGYG 514 + G+V A + T + +G+G Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFG 153 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/74 (28%), Positives = 41/74 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 T+K++VG + T +++ F G V A +M+DK + R R FGFVT +E++ + Sbjct: 108 TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE-SEDIVEKV 166 Query: 260 ESLNDTEVGGRKIK 301 ++ E+ + ++ Sbjct: 167 CEIHFHEINNKMVE 180 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = +2 Query: 332 IDASAPESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKS 502 ++ AP+ + DS + K+++G L+ + T E L+ +F + GEV V R P T +S Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60 Query: 503 KGYG 514 +G+G Sbjct: 61 RGFG 64
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 53.5 bits (127), Expect = 5e-07 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 2/174 (1%) Frame = +2 Query: 86 KLYVGNIPRT-VTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 K++VGN+ T +EL+A+FA +GTV+ VM ++F FV M AIE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGAVRAIE 53 Query: 263 SLNDTEV-GGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 +L+ E+ GR + V + S P +++ +K++VGN++ T++ L++ Sbjct: 54 ALHGHELRPGRALVVEM--------------SRPRPLNT-WKIFVGNVSAACTSQELRSL 98 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 F +G V+ V K Y N E++G+ I V Sbjct: 99 FERRGRVIECDV--------VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 53.5 bits (127), Expect = 5e-07 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 2/174 (1%) Frame = +2 Query: 86 KLYVGNIPRT-VTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 K++VGN+ T +EL+A+FA +GTV+ VM ++F FV M AIE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGAVRAIE 53 Query: 263 SLNDTEV-GGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 +L+ E+ GR + V + S P +++ +K++VGN++ T++ L++ Sbjct: 54 ALHGHELRPGRALVVEM--------------SRPRPLNT-WKIFVGNVSAACTSQELRSL 98 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 F +G V+ V K Y N E++G+ I V Sbjct: 99 FERRGRVIECDV--------VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/78 (33%), Positives = 43/78 (55%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 + +VG + L F+ G +V ++++ D+ +GRSR FGFVT + + AIE Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 266 LNDTEVGGRKIKVNVTES 319 +N ++ GR I VN +S Sbjct: 69 MNGQDLDGRSITVNEAQS 86 Score = 42.0 bits (97), Expect = 0.002 Identities = 26/93 (27%), Positives = 44/93 (47%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 D +Y+ +VG LA L+ FS+ GE++ + + T +S+G+G Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 551 XXXXXNNTELEGQTIRVNRA*T*QKFRTGGKGR 649 N +L+G++I VN A + + GG GR Sbjct: 65 AIEGMNGQDLDGRSITVNEAQS-RGSGAGGGGR 96
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 53.1 bits (126), Expect = 7e-07 Identities = 39/143 (27%), Positives = 63/143 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + T + L F G V VM D + RSR FGFVT V + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + E+ + I V A ++P V K++VG L+ T E +K +F Sbjct: 80 QSRHELDSKTIDPKV---------AFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFE 130 Query: 446 EKGEVLSATVSRIPGTPKSKGYG 514 + G+V A + T + +G+G Sbjct: 131 QFGKVDDAMLMFDKTTNRHRGFG 153 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/74 (28%), Positives = 41/74 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 T+K++VG + T +++ F G V A +M+DK + R R FGFVT +E++ + Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE-SEDIVEKV 166 Query: 260 ESLNDTEVGGRKIK 301 ++ E+ + ++ Sbjct: 167 CEIHFHEINNKMVE 180 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = +2 Query: 332 IDASAPESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKS 502 ++ AP+ + DS + K+++G L+ + T E L+ +F + GEV V R P T +S Sbjct: 1 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 60 Query: 503 KGYG 514 +G+G Sbjct: 61 RGFG 64
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 53.1 bits (126), Expect = 7e-07 Identities = 46/163 (28%), Positives = 74/163 (45%) Frame = +2 Query: 23 AAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGR 202 A V VLA + E RKL++G + T + L + G VV VM D + R Sbjct: 12 ADVIVLADREEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKR 71 Query: 203 SRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQY 382 SR FGF+T + + V A E+ + G+ ++ + LP + + E+ S Sbjct: 72 SRGFGFITYTKSLMVDRAQEN-RPHIIDGKTVE---AKRALPRPERESRETNISV----K 123 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 K++VG L E L+ +F + G V+S + T K +G+ Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGF 166 Score = 38.1 bits (87), Expect = 0.023 Identities = 21/76 (27%), Positives = 36/76 (47%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K+++G LA T E LK F+ + G+V+ V R T +S+G+G Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 563 XNNTELEGQTIRVNRA 610 + ++G+T+ RA Sbjct: 93 RPHI-IDGKTVEAKRA 107
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 53.1 bits (126), Expect = 7e-07 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 2/174 (1%) Frame = +2 Query: 86 KLYVGNIPRT-VTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 K++VGN+ T +EL+A+FA +GTV+ VM ++F FV M AIE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGALRAIE 53 Query: 263 SLNDTEV-GGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 +L+ E+ GR + V + S P +++ +K++VGN++ T++ L++ Sbjct: 54 ALHGHELRPGRALVVEM--------------SRPRPLNT-WKIFVGNVSAACTSQELRSL 98 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 F +G V+ V K Y N E++G+ I V Sbjct: 99 FERRGRVIECDV--------VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 53.1 bits (126), Expect = 7e-07 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 2/174 (1%) Frame = +2 Query: 86 KLYVGNIPRT-VTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 K++VGN+ T +EL+A+FA +GTV+ VM ++F FV M AIE Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--------KQFAFVHMRENAGALRAIE 53 Query: 263 SLNDTEV-GGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNF 439 +L+ E+ GR + V + S P +++ +K++VGN++ T++ L++ Sbjct: 54 ALHGHELRPGRALVVEM--------------SRPRPLNT-WKIFVGNVSAACTSQELRSL 98 Query: 440 FSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 F +G V+ V K Y N E++G+ I V Sbjct: 99 FERRGRVIECDV--------VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 144
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 52.8 bits (125), Expect = 9e-07 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 24/175 (13%) Frame = +2 Query: 29 VKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSR 208 V+V +S+ + + L + L+V +IP+ VT+++L+ F+ + A V+ D + RSR Sbjct: 8 VEVPSSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDT-NKRSR 66 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNV------TESFLPNIDASAPES----- 355 FGFV+ + ++ A+ T+ G ++V++ ++ ++ S PES Sbjct: 67 GFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVEKSTPESSEKIT 126 Query: 356 ------------EPSFVDSQYKVYVGNLAKKVTTEV-LKNFFSEKGEVLSATVSR 481 E S + + K+ + N+ V LK F G V+ AT+ R Sbjct: 127 GQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPR 181 Score = 41.2 bits (95), Expect = 0.003 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +2 Query: 86 KLYVGNIPRTVTND-ELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 KL + N+P + + +L +F +GTVV A + K G+ F FVTM A+E Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPR-KRDGKLCGFAFVTMKKISNCRIALE 206 Query: 263 SLNDTEVGGRKIKVN 307 + D ++ GRK+ V+ Sbjct: 207 NTKDLKIDGRKVAVD 221
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 52.4 bits (124), Expect = 1e-06 Identities = 37/143 (25%), Positives = 63/143 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + + D L F+ G + VM D + RSR FGFVT + V + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + E+ + I V A ++P V K++VG L+ E +K +F Sbjct: 82 PHH-ELDSKTIDPKV---------AFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131 Query: 446 EKGEVLSATVSRIPGTPKSKGYG 514 + G+V A + T + +G+G Sbjct: 132 QFGKVEDAMLMFDKTTNRHRGFG 154 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/74 (28%), Positives = 39/74 (52%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 T+K++VG + +++ F G V A +M+DK + R R FGFVT E+V + Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN-EDVVEKV 167 Query: 260 ESLNDTEVGGRKIK 301 ++ E+ + ++ Sbjct: 168 CEIHFHEINNKMVE 181 Score = 40.8 bits (94), Expect = 0.004 Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 3/60 (5%) Frame = +2 Query: 344 APESEPSFVDSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 +P + S DSQ+ K+++G L+ + + + L+++FS+ GE+ V R P T +S+G+G Sbjct: 6 SPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 52.4 bits (124), Expect = 1e-06 Identities = 37/143 (25%), Positives = 63/143 (44%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + + D L F+ G + VM D + RSR FGFVT + V + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + E+ + I V A ++P V K++VG L+ E +K +F Sbjct: 82 PHH-ELDSKTIDPKV---------AFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131 Query: 446 EKGEVLSATVSRIPGTPKSKGYG 514 + G+V A + T + +G+G Sbjct: 132 QFGKVEDAMLMFDKTTNRHRGFG 154 Score = 42.0 bits (97), Expect = 0.002 Identities = 21/74 (28%), Positives = 39/74 (52%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 T+K++VG + +++ F G V A +M+DK + R R FGFVT E+V + Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN-EDVVEKV 167 Query: 260 ESLNDTEVGGRKIK 301 ++ E+ + ++ Sbjct: 168 CEIHFHEINNKMVE 181 Score = 39.3 bits (90), Expect = 0.010 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 3/51 (5%) Frame = +2 Query: 371 DSQY---KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 DSQ+ K+++G L+ + + + L+++FS+ GE+ V R P T +S+G+G Sbjct: 15 DSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 52.4 bits (124), Expect = 1e-06 Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 1/167 (0%) Frame = +2 Query: 14 RRRAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKY 193 R RA ++ + + E K++VG + + +L F G VV + D Sbjct: 45 RPRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN 104 Query: 194 SGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVD 373 +GRSR FGF+ A V ++ + + GR I A A + +P Sbjct: 105 TGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPK---------KAMAMKKDP---- 150 Query: 374 SQYKVYVGNL-AKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 K++VG L + T E ++ +F E GE+ + + P K +G+ Sbjct: 151 -VKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGF 196 Score = 38.9 bits (89), Expect = 0.014 Identities = 16/44 (36%), Positives = 30/44 (68%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K++VG L+ + + LK++F++ GEV+ T+ P T +S+G+G Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 112
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 51.6 bits (122), Expect = 2e-06 Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 23/220 (10%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMF-----------AAHGTVV 166 + AV V+ S+ +A R+LYVGNIP VT +E+ F AA V+ Sbjct: 78 QTAVPVVGSTITRQA------RRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVL 131 Query: 167 RAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESF--LPNIDA 340 ++ DK F F+ + +E A+ + + + G+ +K+ + +P I Sbjct: 132 ACQINLDK------NFAFLEFRSIDETTQAM-AFDGINLKGQSLKIRRPHDYQPMPGI-T 183 Query: 341 SAPESEPSFV----------DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPG 490 P +P+ V DS +K+++G L + + +K G++ + + + Sbjct: 184 DTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAA 243 Query: 491 TPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA 610 T SKGY N +L + + V RA Sbjct: 244 TGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRA 283
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 51.2 bits (121), Expect = 3e-06 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 3/129 (2%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L++G++ TVT + L +F + + V A+V D + +S G++ EE A+E L Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKK---VTTEVLKNF 439 N T+V G++I++ +P++ + + V+ NL +TT V + Sbjct: 153 NYTKVNGKEIRI------MPSLRNTTFRK-----NFGTNVFFSNLPLNNPLLTTRVFYDT 201 Query: 440 FSEKGEVLS 466 FS G++LS Sbjct: 202 FSRYGKILS 210 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/72 (29%), Positives = 33/72 (45%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 +++G+L + VT E LK F + +SA V T KS G+G Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 566 NNTELEGQTIRV 601 N T++ G+ IR+ Sbjct: 153 NYTKVNGKEIRI 164
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 51.2 bits (121), Expect = 3e-06 Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 8/199 (4%) Frame = +2 Query: 29 VKVLASSAVMEAPEEL------ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDK 190 +KV + +E P+ A R L N+ +T DEL +F E+ Sbjct: 372 LKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED-----AVEIRLVS 426 Query: 191 YSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFV 370 GRS+ ++ + + +E E+ GR + + T + + S ++ Sbjct: 427 QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNS--TWS 484 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXX 544 + + NL+ T E L+ F + AT ++P P KSKGY Sbjct: 485 GESKTLVLSNLSYSATEETLQEVFEK------ATFIKVPQNPHGKSKGYAFIEFASFEDA 538 Query: 545 XXXXXXXNNTELEGQTIRV 601 N E+EG+TIR+ Sbjct: 539 KEALNSCNKMEIEGRTIRL 557 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/76 (30%), Positives = 42/76 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 ++ L+V + T + L F VRA ++ D+ +G S+ FGFV ++ E+ AA Sbjct: 573 SKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 629 Query: 260 ESLNDTEVGGRKIKVN 307 E++ D E+ G K+ ++ Sbjct: 630 EAMEDGEIDGNKVTLD 645 Score = 36.2 bits (82), Expect = 0.088 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 4/207 (1%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDEL----SAMFAAHGTVVRAEVMYDKYSGRSR 208 A +E E L++GN+ + EL S +FA + D +G +R Sbjct: 296 AKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAA-----VDVRTGTNR 350 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKV 388 +FG+V +AE++ A+E L +V G +IK+ + + V + + Sbjct: 351 KFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG-----------RDSKKVRAARTL 398 Query: 389 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXN 568 NL+ +T + LK F + E + + +SKG Sbjct: 399 LAKNLSFNITEDELKEVFEDAVE-----IRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQ 453 Query: 569 NTELEGQTIRVNRA*T*QKFRTGGKGR 649 E++G+++ + + TG KG+ Sbjct: 454 GAEIDGRSVSL--------YYTGEKGQ 472
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 51.2 bits (121), Expect = 3e-06 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 2/180 (1%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 EE R ++V + +T+ EL F G V A+++ DK SGRS+ +V + V Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294 Query: 248 AAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPE--SEPSFVDSQYKVYVGNLAKKVTT 421 AAI +L+ + G + V +TE+ A E S +++ V N+ +T Sbjct: 295 QAAI-ALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTD 353 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 E +K F G++ + R +SKG+G N +L G+ +RV Sbjct: 354 EDVKAIFEPFGDIEFVHLQR-DDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/75 (36%), Positives = 44/75 (58%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 ++L+V NIP + +L MF G ++ E+++++ S+ FGFVT + + A E Sbjct: 117 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRARE 174 Query: 263 SLNDTEVGGRKIKVN 307 L+ T V GRKI+VN Sbjct: 175 KLHGTVVEGRKIEVN 189
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/97 (28%), Positives = 53/97 (54%) Frame = +2 Query: 44 SSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFV 223 + A+ E + + +YVGN+ +VT +EL + FA+ G+V R ++ DK++G + F ++ Sbjct: 42 TEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYI 101 Query: 224 TMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNI 334 S V A+ LN + + R +KV + +P + Sbjct: 102 EFSEPSLVPNAL-LLNGSMLHERPLKVTPKRTNVPGM 137 Score = 33.5 bits (75), Expect = 0.57 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Frame = +2 Query: 278 EVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGE 457 E+ K+ + L N + A ++ +D+Q VYVGN+ VT E L++ F+ G Sbjct: 23 EMEAEAAKLRAMQEQLDN-ETEALRNDKESIDAQ-SVYVGNVDYSVTPEELQSHFASCGS 80 Query: 458 VLSATV--SRIPGTPKSKGY 511 V T+ + G PK Y Sbjct: 81 VNRVTILCDKFTGHPKGFAY 100
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/72 (33%), Positives = 43/72 (59%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++VGNIP V+ +++ +F G V +++ D +G + +GF +E A A+ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 269 NDTEVGGRKIKV 304 N++E+G RKI+V Sbjct: 69 NNSELGPRKIRV 80 Score = 36.2 bits (82), Expect = 0.088 Identities = 21/72 (29%), Positives = 32/72 (44%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXX 565 V+VGN+ V+ + + F++ G V + + P T KGYG Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 566 NNTELEGQTIRV 601 NN+EL + IRV Sbjct: 69 NNSELGPRKIRV 80
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/75 (36%), Positives = 44/75 (58%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 ++L+V NIP + +L MF G ++ E+++++ S+ FGFVT + + A E Sbjct: 121 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRARE 178 Query: 263 SLNDTEVGGRKIKVN 307 L+ T V GRKI+VN Sbjct: 179 KLHGTVVEGRKIEVN 193
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 50.8 bits (120), Expect = 3e-06 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 18/160 (11%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAA-HGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++VG++ V ++ ++FA+ + + A++M D + SR +GFV + + +A+ Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247 Query: 266 LNDTEVGGRKIKV---------------NVTESFLPNIDA-SAPESEPSFVDSQYK-VYV 394 + G R I+V NV +P + SA + P F D+ V+V Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307 Query: 395 GNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 G L+K V+ E LK F GE++ + P KG G Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCG 341
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/75 (36%), Positives = 44/75 (58%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 ++L+V NIP + +L MF G ++ E+++++ S+ FGFVT + + A E Sbjct: 116 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRARE 173 Query: 263 SLNDTEVGGRKIKVN 307 L+ T V GRKI+VN Sbjct: 174 KLHGTVVEGRKIEVN 188
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 50.4 bits (119), Expect = 4e-06 Identities = 42/147 (28%), Positives = 63/147 (42%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 ASSAV T L V +P T +L F+ G V+ +V D +G S+ FGF Sbjct: 90 ASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGF 149 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGN 400 V + E + + + GR LPN S E S KV+VG Sbjct: 150 VRFTEYETQVKVMSQRH--MIDGRWCDCK-----LPNSKQSQDEPLRS-----RKVFVGR 197 Query: 401 LAKKVTTEVLKNFFSEKGEVLSATVSR 481 + +T + L+ FFS+ G+V+ + + Sbjct: 198 CTEDMTEDELREFFSQYGDVMDVFIPK 224 Score = 32.7 bits (73), Expect = 0.97 Identities = 22/60 (36%), Positives = 28/60 (46%) Frame = +2 Query: 335 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 DAS+ V + V L K T + LK +FS GEVL V + T SKG+G Sbjct: 89 DASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFG 148 Score = 31.6 bits (70), Expect = 2.2 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMS 232 E L +RK++VG +T DEL F+ +G V+ +V K R F FVT + Sbjct: 186 EPLRSRKVFVGRCTEDMTEDELREFFSQYGDVM--DVFIPK---PFRAFAFVTFA 235
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 50.4 bits (119), Expect = 4e-06 Identities = 22/74 (29%), Positives = 45/74 (60%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 +R +Y+G+IP T +++ + + G V+ ++M+D +GRS+ + F+ E A+A+ Sbjct: 17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 76 Query: 260 ESLNDTEVGGRKIK 301 +LN ++G R +K Sbjct: 77 RNLNGYQLGSRFLK 90
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 50.4 bits (119), Expect = 4e-06 Identities = 37/130 (28%), Positives = 59/130 (45%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L+VGN+P +T DE +FA +G EV +K G FGF+ + + A Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGE--PGEVFINKGKG----FGFIKLESRALAEIAKAE 343 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+DT + GR+++V F + V NL+ V+ E+L+ FS Sbjct: 344 LDDTPMRGRQLRVR-------------------FATHAAALSVRNLSPYVSNELLEEAFS 384 Query: 446 EKGEVLSATV 475 + G + A V Sbjct: 385 QFGPIERAVV 394
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 50.4 bits (119), Expect = 4e-06 Identities = 37/130 (28%), Positives = 59/130 (45%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L+VGN+P +T DE +FA +G EV +K G FGF+ + + A Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGE--PGEVFINKGKG----FGFIKLESRALAEIAKAE 351 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L+DT + GR+++V F + V NL+ V+ E+L+ FS Sbjct: 352 LDDTPMRGRQLRVR-------------------FATHAAALSVRNLSPYVSNELLEEAFS 392 Query: 446 EKGEVLSATV 475 + G + A V Sbjct: 393 QFGPIERAVV 402
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/142 (26%), Positives = 62/142 (43%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + T +L F+ G VV + D +GRSR FGFV +E V ++ Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + ++ G+ I P + EP K++VG L+ E ++ +F Sbjct: 156 -KEHKLNGKVID--------PKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFG 201 Query: 446 EKGEVLSATVSRIPGTPKSKGY 511 GEV S + T K +G+ Sbjct: 202 GFGEVESIELPMDNKTNKRRGF 223 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = +2 Query: 275 TEVGGRKIKVNVTESFLPNIDASAPESEPSFVD-SQYKVYVGNLAKKVTTEVLKNFFSEK 451 TE G KI + E + ++S +E + ++K+++G L+ T + LK++FS+ Sbjct: 59 TEAEGAKIDASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 118 Query: 452 GEVLSATVSRIPGTPKSKGYG 514 G+V+ T+ P T +S+G+G Sbjct: 119 GDVVDCTLKLDPITGRSRGFG 139
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 50.1 bits (118), Expect = 6e-06 Identities = 43/147 (29%), Positives = 62/147 (42%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 ASSAV T L V +P T +L F+ G V+ +V D +G S+ FGF Sbjct: 90 ASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGF 149 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGN 400 V + E + + + GR LPN S E S KV+VG Sbjct: 150 VRFTEYETQVKVMSQRH--MIDGRWCDCK-----LPNSKQSPDEPLRS-----RKVFVGR 197 Query: 401 LAKKVTTEVLKNFFSEKGEVLSATVSR 481 + +T E L+ FF + GEV+ + + Sbjct: 198 CTEDMTAEELQQFFCQYGEVVDVFIPK 224 Score = 33.1 bits (74), Expect = 0.74 Identities = 22/60 (36%), Positives = 29/60 (48%) Frame = +2 Query: 335 DASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 DAS+ V + V L K T + LK++FS GEVL V + T SKG+G Sbjct: 89 DASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFG 148
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 50.1 bits (118), Expect = 6e-06 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 6/149 (4%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + + T + L + F+ +G VV +M DK + +SR FGFV V + S Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAP-----ESEPSFVDSQY-KVYVGNLAKKVTTEV 427 T + GR I + S P + EP +S+ K++VG + Sbjct: 71 RPHT-LDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETE 129 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 LK +F+ G V + + +G+G Sbjct: 130 LKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158 Score = 47.0 bits (110), Expect = 5e-05 Identities = 25/83 (30%), Positives = 41/83 (49%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 E + K++VG IP EL F G V ++YD R R FGF+T + V Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 168 Query: 248 AAAIESLNDTEVGGRKIKVNVTE 316 A+ +++ ++ G+K++V E Sbjct: 169 DQAV-NMHFHDIMGKKVEVKRAE 190
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/142 (26%), Positives = 62/142 (43%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + T +L F+ G VV + D +GRSR FGFV +E V ++ Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + ++ G+ I P + EP K++VG L+ E ++ +F Sbjct: 158 -KEHKLNGKVID--------PKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFG 203 Query: 446 EKGEVLSATVSRIPGTPKSKGY 511 GEV S + T K +G+ Sbjct: 204 GFGEVESIELPMDNKTNKRRGF 225 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = +2 Query: 278 EVGGRKIKVNVTESFLPNIDASAPESEPSFVD-SQYKVYVGNLAKKVTTEVLKNFFSEKG 454 E G KI + E + ++S +E + ++K+++G L+ T + LK++FS+ G Sbjct: 62 EAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFG 121 Query: 455 EVLSATVSRIPGTPKSKGYG 514 EV+ T+ P T +S+G+G Sbjct: 122 EVVDCTLKLDPITGRSRGFG 141
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/142 (26%), Positives = 62/142 (43%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+++G + T +L F+ G VV + D +GRSR FGFV +E V ++ Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + ++ G+ I P + EP K++VG L+ E ++ +F Sbjct: 158 -KEHKLNGKVID--------PKRAKAMKTKEP-----VKKIFVGGLSPDTPEEKIREYFG 203 Query: 446 EKGEVLSATVSRIPGTPKSKGY 511 GEV S + T K +G+ Sbjct: 204 GFGEVESIELPMDNKTNKRRGF 225 Score = 42.7 bits (99), Expect = 0.001 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = +2 Query: 278 EVGGRKIKVNVTESFLPNIDASAPESEPSFVD-SQYKVYVGNLAKKVTTEVLKNFFSEKG 454 E G KI + E + ++S SE + ++K+++G L+ T + LK++FS+ G Sbjct: 62 ESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFG 121 Query: 455 EVLSATVSRIPGTPKSKGYG 514 EV+ T+ P T +S+G+G Sbjct: 122 EVVDCTLKLDPITGRSRGFG 141
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 1/144 (0%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +++VG IPR + DEL +F G + +M D +G +R + FVT T E A++ Sbjct: 73 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132 Query: 266 LNDTEV-GGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFF 442 N+ E+ G+ I V ++ + +++VG++ K T E + F Sbjct: 133 YNNHEIRSGKHIGVCISV-------------------ANNRLFVGSIPKSKTKEQILEEF 173 Query: 443 SEKGEVLSATVSRIPGTPKSKGYG 514 S+ E L+ + K K G Sbjct: 174 SKVTEGLTDVILYHQPDDKKKNRG 197 Score = 44.3 bits (103), Expect = 3e-04 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 2/178 (1%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAA 253 +A +L+VG+IP++ T +++ F+ + ++Y + + + GF + + A Sbjct: 150 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 209 Query: 254 AIESLNDTEVGGRKIKVNV-TESFLPNIDASAPESEPSFVDSQYKV-YVGNLAKKVTTEV 427 A ++ G K+ NV T + I+ PE V ++ KV +V NLA VT E+ Sbjct: 210 A-QARRRLMSGKVKVWGNVGTVEWADPIEDPDPE-----VMAKVKVLFVRNLANTVTEEI 263 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+ FS+ G ++ K K Y N +LEG+ I + Sbjct: 264 LEKSFSQFG--------KLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 313
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 50.1 bits (118), Expect = 6e-06 Identities = 47/187 (25%), Positives = 78/187 (41%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++G + + L F A GT+ V+ + + RSR FGFVT S EE AA+ + Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAM-A 66 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + V G +++ S D++ P + K++VG L V L FS Sbjct: 67 ASPHAVDGNTVELKRAVS---REDSARPGAHAKV----KKLFVGGLKGDVAEGDLIEHFS 119 Query: 446 EKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRVNRA*T*QK 625 + G V A + + K +G+G + ++G + V +A + Sbjct: 120 QFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFH-PIQGHRVEVKKAVPKED 178 Query: 626 FRTGGKG 646 +GG G Sbjct: 179 IYSGGGG 185 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/47 (44%), Positives = 30/47 (63%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFV 223 +KL+VG + V +L F+ GTV +AE++ DK SG+ R FGFV Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 1/144 (0%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +++VG IPR + DEL +F G + +M D +G +R + FVT T E A++ Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222 Query: 266 LNDTEV-GGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFF 442 N+ E+ G+ I V ++ + +++VG++ K T E + F Sbjct: 223 YNNHEIRSGKHIGVCISV-------------------ANNRLFVGSIPKSKTKEQILEEF 263 Query: 443 SEKGEVLSATVSRIPGTPKSKGYG 514 S+ E L+ + K K G Sbjct: 264 SKVTEGLTDVILYHQPDDKKKNRG 287 Score = 44.3 bits (103), Expect = 3e-04 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 2/178 (1%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAA 253 +A +L+VG+IP++ T +++ F+ + ++Y + + + GF + + A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 254 AIESLNDTEVGGRKIKVNV-TESFLPNIDASAPESEPSFVDSQYKV-YVGNLAKKVTTEV 427 A ++ G K+ NV T + I+ PE V ++ KV +V NLA VT E+ Sbjct: 300 A-QARRRLMSGKVKVWGNVGTVEWADPIEDPDPE-----VMAKVKVLFVRNLANTVTEEI 353 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+ FS+ G ++ K K Y N +LEG+ I + Sbjct: 354 LEKSFSQFG--------KLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 403
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 1/144 (0%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +++VG IPR + DEL +F G + +M D +G +R + FVT T E A++ Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222 Query: 266 LNDTEV-GGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFF 442 N+ E+ G+ I V ++ + +++VG++ K T E + F Sbjct: 223 YNNHEIRSGKHIGVCISV-------------------ANNRLFVGSIPKSKTKEQILEEF 263 Query: 443 SEKGEVLSATVSRIPGTPKSKGYG 514 S+ E L+ + K K G Sbjct: 264 SKVTEGLTDVILYHQPDDKKKNRG 287 Score = 44.3 bits (103), Expect = 3e-04 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 2/178 (1%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAA 253 +A +L+VG+IP++ T +++ F+ + ++Y + + + GF + + A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 254 AIESLNDTEVGGRKIKVNV-TESFLPNIDASAPESEPSFVDSQYKV-YVGNLAKKVTTEV 427 A ++ G K+ NV T + I+ PE V ++ KV +V NLA VT E+ Sbjct: 300 A-QARRRLMSGKVKVWGNVGTVEWADPIEDPDPE-----VMAKVKVLFVRNLANTVTEEI 353 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+ FS+ G ++ K K Y N +LEG+ I + Sbjct: 354 LEKAFSQFG--------KLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 403
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 50.1 bits (118), Expect = 6e-06 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 4/147 (2%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAE---EVAA 253 RKL+VG + T EL F +G + V D +GRSR F F+ + E +V+A Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115 Query: 254 AIESL-NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVL 430 A E + N +V +K K K++VG L +++ E + Sbjct: 116 ADEHIINSKKVDPKKAKAR-----------------------HGKIFVGGLTTEISDEEI 152 Query: 431 KNFFSEKGEVLSATVSRIPGTPKSKGY 511 K +F + G ++ + + KG+ Sbjct: 153 KTYFGQFGNIVEVEMPFDKQKSQRKGF 179 Score = 40.8 bits (94), Expect = 0.004 Identities = 17/73 (23%), Positives = 39/73 (53%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K++VG + ++++E+ F G +V E+ +DK + + F F+T +E+V + Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFD-SEQVVTDLLK 195 Query: 266 LNDTEVGGRKIKV 304 ++ G+++ V Sbjct: 196 TPKQKIAGKEVDV 208 Score = 37.4 bits (85), Expect = 0.039 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%) Frame = +2 Query: 272 DTEVGGRKIKVNVTESF--LPNIDASAPESEPSFVDSQY----------KVYVGNLAKKV 415 DTE+ G +VT N DA A S D+Q K++VG L+ + Sbjct: 8 DTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWET 67 Query: 416 TTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 511 T + L++ F + GE+ S V P T +S+G+ Sbjct: 68 TEKELRDHFGKYGEIESINVKTDPQTGRSRGF 99
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/75 (34%), Positives = 44/75 (58%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 ++L+V NIP + +L MF G V E+++++ S+ FGFVTM ++ A + Sbjct: 153 KRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQ 210 Query: 263 SLNDTEVGGRKIKVN 307 L+ + + GRKI+VN Sbjct: 211 ELHGSMIEGRKIEVN 225
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 50.1 bits (118), Expect = 6e-06 Identities = 24/74 (32%), Positives = 41/74 (55%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + L +F+ +G + V+ D+ + RSR FGFVT ++ A+ + Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 LNDTEVGGRKIKVN 307 +N V GR+I+V+ Sbjct: 67 MNGKSVDGRQIRVD 80 Score = 37.4 bits (85), Expect = 0.039 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 563 XNNTELEGQTIRVNRA 610 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 50.1 bits (118), Expect = 6e-06 Identities = 24/74 (32%), Positives = 41/74 (55%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + L +F+ +G + V+ D+ + RSR FGFVT ++ A+ + Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 LNDTEVGGRKIKVN 307 +N V GR+I+V+ Sbjct: 67 MNGKSVDGRQIRVD 80 Score = 37.4 bits (85), Expect = 0.039 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 563 XNNTELEGQTIRVNRA 610 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 50.1 bits (118), Expect = 6e-06 Identities = 35/142 (24%), Positives = 62/142 (43%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K++VG + + +L F G VV + D +GRSR FGF+ + V ++ Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 + + GR I A A + +P K++VG L + T E ++ +F Sbjct: 136 -KEHRLDGRVIDPK---------KAMAMKKDP-----VKKIFVGGLNPEATEEKIREYFG 180 Query: 446 EKGEVLSATVSRIPGTPKSKGY 511 + GE+ + + P K +G+ Sbjct: 181 QFGEIEAIELPIDPKLNKRRGF 202 Score = 38.9 bits (89), Expect = 0.014 Identities = 16/44 (36%), Positives = 30/44 (68%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K++VG L+ + + LK++F++ GEV+ T+ P T +S+G+G Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFG 119
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 50.1 bits (118), Expect = 6e-06 Identities = 29/90 (32%), Positives = 47/90 (52%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGF 220 A SA+ + ++ K++VG +P T+ L F G + A V+ D+ +G+SR +GF Sbjct: 18 APSAMHGSRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGF 77 Query: 221 VTMSTAEEVAAAIESLNDTEVGGRKIKVNV 310 VTM+ A + N + GRK VN+ Sbjct: 78 VTMADRAAADRACKDPNPI-IDGRKANVNL 106 Score = 32.7 bits (73), Expect = 0.97 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = +2 Query: 317 SFLPNIDASAPESEPSFVDSQY-KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGT 493 S P A+ S D+ + K++VG L T L+ +F G++ A V T Sbjct: 10 SVFPRPSAAPSAMHGSRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT 69 Query: 494 PKSKGYG 514 KS+GYG Sbjct: 70 GKSRGYG 76
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.7 bits (117), Expect = 8e-06 Identities = 24/74 (32%), Positives = 41/74 (55%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + L +F+ +G + V+ D+ + RSR FGFVT ++ A+ + Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 LNDTEVGGRKIKVN 307 +N V GR+I+V+ Sbjct: 67 MNGKSVDGRQIRVD 80 Score = 38.1 bits (87), Expect = 0.023 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 563 XNNTELEGQTIRVNRA 610 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.7 bits (117), Expect = 8e-06 Identities = 24/74 (32%), Positives = 41/74 (55%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + L +F+ +G + V+ D+ + RSR FGFVT ++ A+ + Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 LNDTEVGGRKIKVN 307 +N V GR+I+V+ Sbjct: 67 MNGKSVDGRQIRVD 80 Score = 38.1 bits (87), Expect = 0.023 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 563 XNNTELEGQTIRVNRA 610 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.7 bits (117), Expect = 8e-06 Identities = 24/74 (32%), Positives = 41/74 (55%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + L +F+ +G + V+ D+ + RSR FGFVT ++ A+ + Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 266 LNDTEVGGRKIKVN 307 +N V GR+I+V+ Sbjct: 67 MNGKSVDGRQIRVD 80 Score = 38.1 bits (87), Expect = 0.023 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K++VG L+ + L+ FS+ G++ V + T +S+G+G Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 563 XNNTELEGQTIRVNRA 610 N ++G+ IRV++A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.7 bits (117), Expect = 8e-06 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V NI + +++L +F +G +V+ D SG+S+ FGFV T E A+ L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 + + G+ + V + + + E + + + +Y+ NL + + E LK Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + A V G + KG+G Sbjct: 320 EEFSSFGSISRAKVMMEVG--QGKGFG 344
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.7 bits (117), Expect = 8e-06 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V NI + +++L +F +G +V+ D SG+S+ FGFV T E A+ L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 + + G+ + V + + + E + + + +Y+ NL + + E LK Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + A V G + KG+G Sbjct: 320 EEFSSFGSISRAKVMMEVG--QGKGFG 344
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.7 bits (117), Expect = 8e-06 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V NI + +++L +F +G +V+ D SG+S+ FGFV T E A+ L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 + + G+ + V + + + E + + + +Y+ NL + + E LK Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + A V G + KG+G Sbjct: 320 EEFSSFGSISRAKVMMEVG--QGKGFG 344
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.7 bits (117), Expect = 8e-06 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V NI + +++L +F +G +V+ D SG+S+ FGFV T E A+ L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 + + G+ + V + + + E + + + +Y+ NL + + E LK Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + A V G + KG+G Sbjct: 320 EEFSSFGSISRAKVMMEVG--QGKGFG 344
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.7 bits (117), Expect = 8e-06 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V NI + +++L +F +G +V+ D SG+S+ FGFV T E A+ L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 + + G+ + V + + + E + + + +Y+ NL + + E LK Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + A V G + KG+G Sbjct: 320 EEFSSFGSISRAKVMMEVG--QGKGFG 344
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.7 bits (117), Expect = 8e-06 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++V NI + +++L +F +G +V+ D SG+S+ FGFV T E A+ L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 269 NDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK-----VYVGNLAKKVTTEVLK 433 + + G+ + V + + + E + + + +Y+ NL + + E LK Sbjct: 260 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319 Query: 434 NFFSEKGEVLSATVSRIPGTPKSKGYG 514 FS G + A V G + KG+G Sbjct: 320 EEFSSFGSISRAKVMMEVG--QGKGFG 344
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 49.7 bits (117), Expect = 8e-06 Identities = 26/73 (35%), Positives = 39/73 (53%) Frame = +2 Query: 95 VGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLND 274 V N+P+ + DEL +F G V+R + DK +G + F FVT + ++ A AI LND Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239 Query: 275 TEVGGRKIKVNVT 313 + +KV T Sbjct: 240 IRMYHMVLKVEWT 252
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/74 (32%), Positives = 40/74 (54%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++G + D L F +G + V+ D+ + RSR FGFVT ++ A+ + Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 266 LNDTEVGGRKIKVN 307 +N V GR+I+V+ Sbjct: 66 MNGKSVDGRQIRVD 79 Score = 35.4 bits (80), Expect = 0.15 Identities = 20/86 (23%), Positives = 38/86 (44%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K+++G L + + L+ F++ G + V + T +S+G+G Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 563 XNNTELEGQTIRVNRA*T*QKFRTGG 640 N ++G+ IRV++A R GG Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERRGG 91
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 49.3 bits (116), Expect = 1e-05 Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 3/177 (1%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 + ++VGN+ T ++L+ F+ G VVRA+++ + G R G V + +++V AI Sbjct: 135 SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAI 192 Query: 260 ESLNDTEVGGRKIKV---NVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVL 430 + RKI V N S + E ++V V NL V + L Sbjct: 193 RQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQAL 252 Query: 431 KNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 K+ F E G V A V + G S G G N +EG + V Sbjct: 253 KDIFKECGNVAHADV-ELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDV 308 Score = 35.0 bits (79), Expect = 0.20 Identities = 20/75 (26%), Positives = 32/75 (42%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R +Y N+P + +L +F G V AE+ YD G V ++ IE Sbjct: 351 RLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDS-KGAPTGIAVVEYDNVDDADVCIE 409 Query: 263 SLNDTEVGGRKIKVN 307 LN+ GG + ++ Sbjct: 410 RLNNYNYGGCDLDIS 424
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 48.9 bits (115), Expect = 1e-05 Identities = 23/74 (31%), Positives = 41/74 (55%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + L F++ G + V+ D+ + RSR FGF+T + E + A+ + Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 266 LNDTEVGGRKIKVN 307 +N + GR+I+V+ Sbjct: 67 MNGESLDGRQIRVD 80 Score = 36.6 bits (83), Expect = 0.067 Identities = 20/76 (26%), Positives = 33/76 (43%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K++VG L + L++ FS G + V + T +S+G+G Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 563 XNNTELEGQTIRVNRA 610 N L+G+ IRV+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/73 (27%), Positives = 42/73 (57%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++VG I ++++ ELS +F+ +G ++ +++YDK G +GF++ + + I+ L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 269 NDTEVGGRKIKVN 307 N V G + +N Sbjct: 257 NGRTVNGSTLFIN 269
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 48.9 bits (115), Expect = 1e-05 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 7/128 (5%) Frame = +2 Query: 68 EELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEV 247 + L+ LYVG++PR + +L + F G V+R V K +G S+ +GFV E Sbjct: 40 QTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVA 99 Query: 248 AAAIESLNDTEVGGRKIKVNV-------TESFLPNIDASAPESEPSFVDSQYKVYVGNLA 406 E++N+ +G R IK +V + F+ +I P+ V K + + Sbjct: 100 KIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPA-VTRYNKTHTEDDV 158 Query: 407 KKVTTEVL 430 KKV T++L Sbjct: 159 KKVGTKLL 166 Score = 37.0 bits (84), Expect = 0.051 Identities = 19/43 (44%), Positives = 27/43 (62%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 +YVG+L + + LK++F + G+VL VSR T SKGYG Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYG 89
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG-RSR 208 K + S + + + LYV +P+T+T EL A+FA G ++ + ++ + + +++ Sbjct: 231 KTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTK 290 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESE-PSFVDSQYK 385 GF+ EE AI +LN T + V S P + + + P+F++ Q Sbjct: 291 GVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLV 350 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVL 463 +G + L F G++L Sbjct: 351 RRIGGAMHTPVNKGLARFSPMAGDML 376 Score = 47.8 bits (112), Expect = 3e-05 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 14/156 (8%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDK-------------YSGRSRRFGFVTM 229 L V +P+T+T DE+ ++F++ G + +++ DK G+S +GFV Sbjct: 151 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210 Query: 230 STAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAK 409 ++ A+ LN + + IKV+ P+ DA + +YV L K Sbjct: 211 VRPQDAEQAVNVLNGLRLQNKTIKVSFAR---PSSDAIKGAN----------LYVSGLPK 257 Query: 410 KVTTEVLKNFFSEKGEVLSATVSRIPGT-PKSKGYG 514 +T + L+ F+ G ++++ + + G ++KG G Sbjct: 258 TMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVG 293
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%) Frame = +2 Query: 32 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSG-RSR 208 K + S + + + LYV +P+T+T EL A+FA G ++ + ++ + + +++ Sbjct: 267 KTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTK 326 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESE-PSFVDSQYK 385 GF+ EE AI +LN T + V S P + + + P+F++ Q Sbjct: 327 GVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLV 386 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVL 463 +G + L F G++L Sbjct: 387 RRIGGAMHTPVNKGLARFSPMAGDML 412 Score = 47.8 bits (112), Expect = 3e-05 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 14/156 (8%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDK-------------YSGRSRRFGFVTM 229 L V +P+T+T DE+ ++F++ G + +++ DK G+S +GFV Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246 Query: 230 STAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAK 409 ++ A+ LN + + IKV+ P+ DA + +YV L K Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKVSFAR---PSSDAIKGAN----------LYVSGLPK 293 Query: 410 KVTTEVLKNFFSEKGEVLSATVSRIPGT-PKSKGYG 514 +T + L+ F+ G ++++ + + G ++KG G Sbjct: 294 TMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVG 329
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 48.5 bits (114), Expect = 2e-05 Identities = 20/75 (26%), Positives = 43/75 (57%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +Y+GN+ R +T ++ +F+ +G V + D+ +G S+ F ++ A+++L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 269 NDTEVGGRKIKVNVT 313 N ++GGR +K++ T Sbjct: 93 NGFKIGGRALKIDHT 107 Score = 33.9 bits (76), Expect = 0.43 Identities = 18/80 (22%), Positives = 38/80 (47%) Frame = +2 Query: 365 FVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXX 544 + D+ Y +Y+GNL +++T + FSE G + +SR T +S+G+ Sbjct: 27 YKDNAY-IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRST 85 Query: 545 XXXXXXXNNTELEGQTIRVN 604 N ++ G+ ++++ Sbjct: 86 ILAVDNLNGFKIGGRALKID 105
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 48.1 bits (113), Expect = 2e-05 Identities = 19/78 (24%), Positives = 44/78 (56%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 ++VG +P +T ++ +F+ +G +V ++ DK +G+S+ F F+ A+++ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 269 NDTEVGGRKIKVNVTESF 322 N ++ GR I+V+ ++ Sbjct: 98 NGIKIKGRTIRVDHVSNY 115 Score = 36.2 bits (82), Expect = 0.088 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Frame = +2 Query: 374 SQYK----VYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXX 541 S+YK ++VG L ++T + FS+ GE+++ + R T KSKG+ Sbjct: 30 SEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89 Query: 542 XXXXXXXXNNTELEGQTIRVN 604 N +++G+TIRV+ Sbjct: 90 TVLAVDNFNGIKIKGRTIRVD 110
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/74 (31%), Positives = 43/74 (58%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R ++VGN+P V + F G+++ ++ DK +G + FG+V + V A++ Sbjct: 287 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK 346 Query: 263 SLNDTEVGGRKIKV 304 LN++E+ GRK++V Sbjct: 347 -LNNSELMGRKLRV 359 Score = 48.1 bits (113), Expect = 2e-05 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 7/190 (3%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTV--VRAEVMYDKYSGRSRRFGFVT--MSTAEEVA 250 R ++VGN+P T +L + F +G + VR + S++ + + ++ Sbjct: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244 Query: 251 AAIESLNDTEVGGRKIKVN---VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 421 A + + +K N + + F +D + SE S D + V+VGNL KV Sbjct: 245 NAYVVFKEESAATQALKRNGAQIADGFRIRVDLA---SETSSRDKR-SVFVGNLPYKVEE 300 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 ++ F + G +++ + R T KG+G NN+EL G+ +RV Sbjct: 301 SAIEKHFLDCGSIMAVRIVRDKMTGIGKGFG-YVLFENTDSVHLALKLNNSELMGRKLRV 359 Query: 602 NRA*T*QKFR 631 R+ +KF+ Sbjct: 360 MRSVNKEKFK 369
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/75 (34%), Positives = 40/75 (53%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K++VG +P T+ L F G + A V+ D+ +G+SR +GFVTM+ A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 266 LNDTEVGGRKIKVNV 310 N + GRK VN+ Sbjct: 72 PNPI-IDGRKANVNL 85 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 K++VG L T L+ +F G++ A V T KS+GYG Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYG 55
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/74 (31%), Positives = 41/74 (55%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + L F++ G + V+ D+ + RSR FGF+T + E + A+ + Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 266 LNDTEVGGRKIKVN 307 +N + GR+I+V+ Sbjct: 67 MNGESLDGRQIRVD 80 Score = 36.6 bits (83), Expect = 0.067 Identities = 20/76 (26%), Positives = 33/76 (43%) Frame = +2 Query: 383 KVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXX 562 K++VG L + L++ FS G + V + T +S+G+G Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 563 XNNTELEGQTIRVNRA 610 N L+G+ IRV+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 48.1 bits (113), Expect = 2e-05 Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 12/195 (6%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHG--------TVVRAE-VMYDKYSGRSRRFGFVTMST 235 R ++VGN+P T +L + F +G +V+ AE + K + R+F Sbjct: 189 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKF-----HP 243 Query: 236 AEEVAAAIESLNDTEVGGRKIKVN---VTESFLPNIDASAPESEPSFVDSQYKVYVGNLA 406 ++ A D + ++ N + E F +D + SE + D + V+VGNL Sbjct: 244 DQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLA---SETASRDKR-SVFVGNLP 299 Query: 407 KKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEG 586 K+ L+ F + G +++ + R P T +G+G NN+EL G Sbjct: 300 YKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFG-YVLFENTDAVHLALKLNNSELMG 358 Query: 587 QTIRVNRA*T*QKFR 631 + +RV R+ +K + Sbjct: 359 RKLRVMRSVNKEKLK 373 Score = 32.0 bits (71), Expect = 1.7 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 3/101 (2%) Frame = +2 Query: 173 EVMYDKYSGRSRRF---GFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDAS 343 E+ D+ GR RR G V A +VA ++ + GG++ K+ V Sbjct: 135 ELHQDQGQGRRRRSQSRGKVADGEALDVALSL-----AKDGGQRTKIPVN---------- 179 Query: 344 APESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLS 466 PE E + ++ V+VGNL + LK+FF E G+V S Sbjct: 180 -PEEER--LKNERTVFVGNLPVTCNKKKLKSFFKEYGQVES 217
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 47.4 bits (111), Expect = 4e-05 Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 8/199 (4%) Frame = +2 Query: 29 VKVLASSAVMEAPEEL------ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDK 190 +KV + +E P+ A R L N+ +T DEL +F E+ Sbjct: 370 LKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED-----AMEIRLVS 424 Query: 191 YSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFV 370 G+S+ ++ + + +E E+ GR + + T + + S ++ Sbjct: 425 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTS--TWS 482 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXX 544 + + NL+ T E L+ F + AT ++P P K KGY Sbjct: 483 GESKTLVLSNLSYSATKETLEEVFEK------ATFIKVPQNPHGKPKGYAFIEFASFEDA 536 Query: 545 XXXXXXXNNTELEGQTIRV 601 N E+EG+TIR+ Sbjct: 537 KEALNSCNKMEIEGRTIRL 555 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/76 (30%), Positives = 42/76 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 ++ L+V + T + L F VRA ++ D+ +G S+ FGFV ++ E+ AA Sbjct: 567 SKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 623 Query: 260 ESLNDTEVGGRKIKVN 307 E++ D E+ G K+ ++ Sbjct: 624 EAMEDGEIDGNKVTLD 639 Score = 40.0 bits (92), Expect = 0.006 Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 4/207 (1%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDEL----SAMFAAHGTVVRAEVMYDKYSGRSR 208 A +E E L++GN+ + +EL S +FA + V D +G +R Sbjct: 294 AKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAV-----VDVRTGTNR 348 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKV 388 +FG+V +AE++ A+E L +V G +IK+ + + V + + Sbjct: 349 KFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG-----------RDSKKVRAARTL 396 Query: 389 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXN 568 NL+ +T + LK F + E + + KSKG Sbjct: 397 LAKNLSFNITEDELKEVFEDAME-----IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQ 451 Query: 569 NTELEGQTIRVNRA*T*QKFRTGGKGR 649 E++G+++ + + TG KG+ Sbjct: 452 GAEIDGRSVSL--------YYTGEKGQ 470
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++G + L A+F +G +V +M D+ + +SR F FVT+ + + A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 266 LNDTEVGGRKIKV 304 +N + G+ IKV Sbjct: 69 MNGKSLDGKAIKV 81 Score = 35.0 bits (79), Expect = 0.20 Identities = 21/92 (22%), Positives = 40/92 (43%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 D K+++G L + + L+ F + G ++ + + T KS+G+ Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKD 64 Query: 551 XXXXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N L+G+ I+V +A T F +G +G Sbjct: 65 AARDMNGKSLDGKAIKVEQA-TKPFFESGRRG 95
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 47.0 bits (110), Expect = 5e-05 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 9/139 (6%) Frame = +2 Query: 56 MEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 M A A R L+VGN+ VT + L +F G V++ ++ DK G+ ++F FV Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKLKQFAFVNFKH 59 Query: 236 AEEVAAAIESLNDTEVGGRKIKVNV-TESFLPNIDASA--PE------SEPSFVDSQYKV 388 V A+ LN ++ GR IK+ + S + DAS P+ S S + Y+ Sbjct: 60 EVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSPTSTSPNSYER 119 Query: 389 YVGNLAKKVTTEVLKNFFS 445 VGN++ T ++++ FS Sbjct: 120 TVGNVSP--TAQMVQRSFS 136
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 14/100 (14%) Frame = +2 Query: 74 LATRKLYVGN--------------IPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 ++TR+ +VGN + T +L +F+ +G + ++YD+ S RSR Sbjct: 101 MSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRG 160 Query: 212 FGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPN 331 F FV ++ A E N E+ GR+I+V+ + + P+ Sbjct: 161 FAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 14/100 (14%) Frame = +2 Query: 74 LATRKLYVGN--------------IPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 ++TR+ +VGN + T +L +F+ +G + ++YD+ S RSR Sbjct: 101 MSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRG 160 Query: 212 FGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPN 331 F FV ++ A E N E+ GR+I+V+ + + P+ Sbjct: 161 FAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 14/100 (14%) Frame = +2 Query: 74 LATRKLYVGN--------------IPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 ++TR+ +VGN + T +L +F+ +G + ++YD+ S RSR Sbjct: 101 MSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRG 160 Query: 212 FGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPN 331 F FV ++ A E N E+ GR+I+V+ + + P+ Sbjct: 161 FAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPH 200
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++G + L A+F +G +V +M D+ + +SR F FVT + + A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 266 LNDTEVGGRKIKV 304 +N + G+ IKV Sbjct: 69 MNGKSLDGKAIKV 81 Score = 36.6 bits (83), Expect = 0.067 Identities = 21/92 (22%), Positives = 40/92 (43%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 D K+++G L + + L+ F + G ++ + + T KS+G+ Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64 Query: 551 XXXXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N L+G+ I+V +A T F +G +G Sbjct: 65 AARDMNGKSLDGKAIKVEQA-TKPSFESGRRG 95
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 46.6 bits (109), Expect = 6e-05 Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 8/199 (4%) Frame = +2 Query: 29 VKVLASSAVMEAPEEL------ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDK 190 +KV + +E P+ A R L N+ +T DEL +F E+ Sbjct: 369 LKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFED-----ALEIRLVS 423 Query: 191 YSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFV 370 G+S+ ++ + + +E E+ GR + + T + + S ++ Sbjct: 424 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNS--TWS 481 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTP--KSKGYGXXXXXXXXXX 544 + + NL+ T E L+ F + AT ++P KSKGY Sbjct: 482 GESKTLVLSNLSYSATEETLQEVFEK------ATFIKVPQNQQGKSKGYAFIEFASFEDA 535 Query: 545 XXXXXXXNNTELEGQTIRV 601 N E+EG+TIR+ Sbjct: 536 KEALNSCNKMEIEGRTIRL 554 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/76 (30%), Positives = 42/76 (55%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 ++ L+V + T + L F VRA ++ D+ +G S+ FGFV ++ E+ AA Sbjct: 570 SKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 626 Query: 260 ESLNDTEVGGRKIKVN 307 E++ D E+ G K+ ++ Sbjct: 627 EAMEDGEIDGNKVTLD 642 Score = 37.4 bits (85), Expect = 0.039 Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 4/207 (1%) Frame = +2 Query: 41 ASSAVMEAPEELATRKLYVGNIPRTVTNDEL----SAMFAAHGTVVRAEVMYDKYSGRSR 208 A +E E L++GN+ + EL S FA + V D +G +R Sbjct: 293 AKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAV-----VDVRTGTNR 347 Query: 209 RFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKV 388 +FG+V +AE++ A+E L +V G +IK+ + + V + + Sbjct: 348 KFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG-----------RDSKKVRAARTL 395 Query: 389 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXN 568 NL+ +T + LK F + E + + KSKG Sbjct: 396 LAKNLSFNITEDELKEVFEDALE-----IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQ 450 Query: 569 NTELEGQTIRVNRA*T*QKFRTGGKGR 649 E++G+++ + + TG KG+ Sbjct: 451 GAEIDGRSVSL--------YYTGEKGQ 469
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/74 (32%), Positives = 42/74 (56%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 R ++VGN+P V L F G++V ++ + +G R FG+V + V A++ Sbjct: 285 RSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK 344 Query: 263 SLNDTEVGGRKIKV 304 LN++E+ GRK++V Sbjct: 345 -LNNSELMGRKLRV 357 Score = 46.6 bits (109), Expect = 6e-05 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 7/190 (3%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTV--VRAEVMYDKYSGRSRRFGFVTMSTAEEVAA- 253 R ++VGN+P T +L + F +G V VR + S++ + + + Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242 Query: 254 -AIESLNDTEVGGRKIKVN---VTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTT 421 A + + ++ N + E F +D + SE + D + V+VGNL +V Sbjct: 243 NAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLA---SETASRDKR-SVFVGNLPYRVDE 298 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+ F + G +++ + R P T +G+G NN+EL G+ +RV Sbjct: 299 SALEEHFLDCGSIVAVRIVRNPLTGVGRGFG-YVLFENTDAVHLALKLNNSELMGRKLRV 357 Query: 602 NRA*T*QKFR 631 R+ +K + Sbjct: 358 MRSVNKEKLK 367 Score = 32.0 bits (71), Expect = 1.7 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Frame = +2 Query: 173 EVMYDKYSGR--SRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASA 346 E+ D+ GR S+ G VT A +VA SLN+ K+ +N E L N Sbjct: 130 EIRQDQGQGRRRSQSRGKVTDGEALDVAL---SLNEDGRQRTKVPLNPEEERLKN----- 181 Query: 347 PESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLS 466 + V+VGNL + LK+FF E G+V S Sbjct: 182 ----------ERTVFVGNLPVTCNKKKLKSFFKEYGQVES 211
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/83 (33%), Positives = 43/83 (51%) Frame = +2 Query: 56 MEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 M A A R L+VGN+ VT + L +F G V++ ++ DK G+ ++F FV Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKH 59 Query: 236 AEEVAAAIESLNDTEVGGRKIKV 304 V A+ LN ++ GR IK+ Sbjct: 60 EVSVPYAMNLLNGIKLFGRPIKI 82
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/83 (33%), Positives = 43/83 (51%) Frame = +2 Query: 56 MEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 M A A R L+VGN+ VT + L +F G V++ ++ DK G+ ++F FV Sbjct: 1 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKH 59 Query: 236 AEEVAAAIESLNDTEVGGRKIKV 304 V A+ LN ++ GR IK+ Sbjct: 60 EVSVPYAMNLLNGIKLYGRPIKI 82
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 46.2 bits (108), Expect = 8e-05 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 + K++VG IP EL F G V ++YD R R FGF+T + V A+ Sbjct: 112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Query: 260 ESLNDTEVGGRKIKVNVTE 316 +++ ++ G+K++V E Sbjct: 172 -NMHFHDIMGKKVEVKRAE 189 Score = 46.2 bits (108), Expect = 8e-05 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + + T + L + F+ +G VV +M DK + +SR FGFV V + S Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 266 LNDTEVGGRKI--KVNVTESFLPNIDA------SAPESEPSFVDSQYKVYVGNLAKKVTT 421 T + GR I K P P S+ S K++VG + Sbjct: 71 RPHT-LDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSS---KSNKIFVGGIPHNCGE 126 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 L+ +F + G V + + +G+G Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFG 157
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 46.2 bits (108), Expect = 8e-05 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = +2 Query: 80 TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAI 259 + K++VG IP EL F G V ++YD R R FGF+T + V A+ Sbjct: 112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Query: 260 ESLNDTEVGGRKIKVNVTE 316 +++ ++ G+K++V E Sbjct: 172 -NMHFHDIMGKKVEVKRAE 189 Score = 45.8 bits (107), Expect = 1e-04 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL+VG + + T + L + F+ +G VV +M DK + +SR FGFV V + S Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 266 LNDTEVGGRKI--KVNVTESFLPNIDA------SAPESEPSFVDSQYKVYVGNLAKKVTT 421 T + GR I K P P S+ S K++VG + Sbjct: 71 RPHT-LDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS---KSNKIFVGGIPHNCGE 126 Query: 422 EVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 L+ +F + G V + + +G+G Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFG 157 Score = 38.1 bits (87), Expect = 0.023 Identities = 18/51 (35%), Positives = 30/51 (58%) Frame = +2 Query: 362 SFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYG 514 S D K++VG L T E L+++FS+ GEV+ + + T +S+G+G Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFG 54
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/90 (31%), Positives = 40/90 (44%) Frame = +2 Query: 2 SARGRRRAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVM 181 SA + A+K A M +E LY+ N+P ++ EL M G V+ ++ Sbjct: 108 SAAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRIL 167 Query: 182 YDKYSGRSRRFGFVTMSTAEEVAAAIESLN 271 D SG SR GF M + E+ A I N Sbjct: 168 RDT-SGTSRGVGFARMESTEKCEAIITHFN 196
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/63 (34%), Positives = 37/63 (58%) Frame = +2 Query: 119 TNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKI 298 T +L +F+ +G + V+YD+ +GRSR F FV ++ A+E N E+ GR+I Sbjct: 131 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRI 190 Query: 299 KVN 307 +V+ Sbjct: 191 RVD 193
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/63 (34%), Positives = 37/63 (58%) Frame = +2 Query: 119 TNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKI 298 T +L +F+ +G + V+YD+ +GRSR F FV ++ A+E N E+ GR+I Sbjct: 129 TERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRI 188 Query: 299 KVN 307 +V+ Sbjct: 189 RVD 191
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/89 (26%), Positives = 48/89 (53%) Frame = +2 Query: 71 ELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVA 250 E +R ++VGNI VT +++ F G + R ++YD+ +G + +G++ + Sbjct: 60 EADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYRE 119 Query: 251 AAIESLNDTEVGGRKIKVNVTESFLPNID 337 A++ LN E+ G+KI V+ + +P + Sbjct: 120 KALQ-LNGGELKGKKIAVSRKRTNIPGFN 147 Score = 36.2 bits (82), Expect = 0.088 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +2 Query: 386 VYVGNLAKKVTTEVLKNFFSEKGEVLSATV--SRIPGTPKSKGYGXXXXXXXXXXXXXXX 559 ++VGN+ VT E +++ F + G++ T+ R GTPK GY Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGY---IEFESPAYREKAL 122 Query: 560 XXNNTELEGQTIRVNR 607 N EL+G+ I V+R Sbjct: 123 QLNGGELKGKKIAVSR 138
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 45.1 bits (105), Expect = 2e-04 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++G + L A+F +G +V +M D+ + +SR F FVT + + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 266 LNDTEVGGRKIKV 304 +N + G+ IKV Sbjct: 69 MNGKSLDGKAIKV 81 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/92 (22%), Positives = 40/92 (43%) Frame = +2 Query: 371 DSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXX 550 D K+++G L + + L+ F + G ++ + + T KS+G+ Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKD 64 Query: 551 XXXXXNNTELEGQTIRVNRA*T*QKFRTGGKG 646 N L+G+ I+V +A T F +G +G Sbjct: 65 VARDMNGKSLDGKAIKVEQA-TKPSFESGRRG 95
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++++G +PR + DEL + G + +M D ++G +R + FVT S +E AI+ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115 Query: 266 LNDTEV-GGRKIKV 304 LN+ E+ GR + V Sbjct: 116 LNNYEIRNGRLLGV 129
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/66 (31%), Positives = 38/66 (57%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++++G +PR + DEL + G + +M D ++G +R + FVT S +E AI+ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQ 115 Query: 266 LNDTEV 283 LN+ E+ Sbjct: 116 LNNYEI 121
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/82 (31%), Positives = 37/82 (45%) Frame = +2 Query: 26 AVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRS 205 A+K A M +E LY+ N+P ++ EL M G V+ ++ D SG S Sbjct: 118 ALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGAS 176 Query: 206 RRFGFVTMSTAEEVAAAIESLN 271 R GF M + E+ A I N Sbjct: 177 RGVGFARMESTEKCEAIITHFN 198
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L V N+P + + +FAA GT+ + + K G+ R+FGF+ + EE AA+ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQAALNH 61 Query: 266 LNDTEVGGRKIKVNVTESF 322 + + + +I V +SF Sbjct: 62 FHRSFIDTTRITVEFCKSF 80 Score = 38.5 bits (88), Expect = 0.018 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Frame = +2 Query: 59 EAPEELA-TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 E E+LA + +L+V N+ T + ++L +F+A+G + D + + + F FVT Sbjct: 391 EEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 450 Query: 236 AEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYK 385 E A ++ GR + V LP+ E + S YK Sbjct: 451 PEHAVKAYAEVDGQVFQGRMLHV------LPSTIKKEASQEANAPGSSYK 494
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 44.7 bits (104), Expect = 2e-04 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 2/178 (1%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAA 253 +A +L+VG+IP+ T + + F+ + ++Y + + + GF + + +A Sbjct: 243 VANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSA 302 Query: 254 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPS-FVDSQYKV-YVGNLAKKVTTEV 427 A ++ G K+ NV ++ + P EP V ++ KV +V NLA VT E+ Sbjct: 303 A-QARRRLMSGKVKVWGNVV-----TVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEI 356 Query: 428 LKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXNNTELEGQTIRV 601 L+ FSE G ++ K K Y N E+EG+ I + Sbjct: 357 LEKSFSEFG--------KLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEI 406 Score = 43.5 bits (101), Expect = 5e-04 Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 1/144 (0%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +++VG IPR + DEL +F G + +M D SG++R + F+T E A++ Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225 Query: 266 LNDTEV-GGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFF 442 + E+ G+ + V ++ + +++VG++ K T E + F Sbjct: 226 CDSYEIRPGKHLGVCISV-------------------ANNRLFVGSIPKNKTKENILEEF 266 Query: 443 SEKGEVLSATVSRIPGTPKSKGYG 514 S+ E L + K K G Sbjct: 267 SKVTEGLVDVILYHQPDDKKKNRG 290
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/83 (32%), Positives = 38/83 (45%) Frame = +2 Query: 23 AAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGR 202 +A+K A M +E LY+ N+P ++ EL M G V+ V+ D SG Sbjct: 121 SALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGA 179 Query: 203 SRRFGFVTMSTAEEVAAAIESLN 271 SR GF M + E+ A I N Sbjct: 180 SRGVGFARMESTEKCEAVIGHFN 202
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 44.7 bits (104), Expect = 2e-04 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 11/119 (9%) Frame = +2 Query: 35 VLASSAVMEAPEE---------LATR--KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVM 181 V AS+ M+A EE +A R K+ + N+P T ++ ++F A+G + R+ + Sbjct: 675 VRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQL-RSVRV 733 Query: 182 YDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLPNIDASAPESE 358 K+ +R FGF +A E A+++L +T + GR++ + N +A PE E Sbjct: 734 PKKFDRSARGFGFADFVSAREAENAMDALKNTHLLGRRLVLE-----FANEEAVDPEQE 787
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/83 (31%), Positives = 38/83 (45%) Frame = +2 Query: 23 AAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGR 202 +A+K A M +E LY+ N+P ++ EL M G V+ ++ D SG Sbjct: 121 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGT 179 Query: 203 SRRFGFVTMSTAEEVAAAIESLN 271 SR GF M + E+ A I N Sbjct: 180 SRGVGFARMESTEKCEAVIGHFN 202
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFA-AHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++VG++ VT +L +F + + A++++D+ +G S+ +GFV + ++E A+ Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 266 LNDTEVGGRKIKVNVT 313 + + GR IKV T Sbjct: 225 MQGVFLNGRAIKVGPT 240 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/73 (24%), Positives = 32/73 (43%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +++G + VT DEL A F GT+V ++ K GFV AAI + Sbjct: 315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCC------GFVQYVDRLSAEAAIAGM 368 Query: 269 NDTEVGGRKIKVN 307 + +++++ Sbjct: 369 QGFPIANSRVRLS 381
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 43.9 bits (102), Expect = 4e-04 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 18/194 (9%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAH-----------GTVVRAEVMYDKYSGRSRRFGFVTM 229 R+LYVGNIP +T + + F A V+ ++ DK F F+ Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK------NFAFLEF 202 Query: 230 STAEEVAAAIESLNDTEVGGRKIKVNVTESF--LPNIDASAPESEPSFV-----DSQYKV 388 + +E A+ + + G+ +K+ + LP + + P V DS +K+ Sbjct: 203 RSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKL 261 Query: 389 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXN 568 ++G L + + +K + G + + + + T SKGY N Sbjct: 262 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 321 Query: 569 NTELEGQTIRVNRA 610 +L + + V RA Sbjct: 322 GMQLGDKKLLVQRA 335
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 43.9 bits (102), Expect = 4e-04 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 18/194 (9%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAH-----------GTVVRAEVMYDKYSGRSRRFGFVTM 229 R+LYVGNIP +T + + F A V+ ++ DK F F+ Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK------NFAFLEF 202 Query: 230 STAEEVAAAIESLNDTEVGGRKIKVNVTESF--LPNIDASAPESEPSFV-----DSQYKV 388 + +E A+ + + G+ +K+ + LP + + P V DS +K+ Sbjct: 203 RSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKL 261 Query: 389 YVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGXXXXXXXXXXXXXXXXXN 568 ++G L + + +K + G + + + + T SKGY N Sbjct: 262 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 321 Query: 569 NTELEGQTIRVNRA 610 +L + + V RA Sbjct: 322 GMQLGDKKLLVQRA 335
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 43.5 bits (101), Expect = 5e-04 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 1/142 (0%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L+VGN+P +T +E+ +F +G EV K G FGF+ + T A Sbjct: 77 RLFVGNLPPDITEEEMRKLFEKYGKA--GEVFIHKDKG----FGFIRLETRTLAEIAKVE 130 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L++ + G++++V F + V NL + V+ E+L+ FS Sbjct: 131 LDNMPLRGKQLRVR-------------------FACHSASLTVRNLPQYVSNELLEEAFS 171 Query: 446 EKGEVLSATV-SRIPGTPKSKG 508 G+V A V G P KG Sbjct: 172 VFGQVERAVVIVDDRGRPSGKG 193
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++++G +PR + DEL + G + +M D ++G +R + FVT S E AI+ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQ 115 Query: 266 LNDTEV-GGRKIKV 304 LN+ E+ GR + V Sbjct: 116 LNNYEIRNGRLLGV 129
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 43.5 bits (101), Expect = 5e-04 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 1/142 (0%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L+VGN+P +T +E+ +F +G EV K G FGF+ + T A Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA--GEVFIHKDKG----FGFIRLETRTLAEIAKVE 128 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L++ + G++++V F + V NL + V+ E+L+ FS Sbjct: 129 LDNMPLRGKQLRVR-------------------FACHSASLTVRNLPQYVSNELLEEAFS 169 Query: 446 EKGEVLSATV-SRIPGTPKSKG 508 G+V A V G P KG Sbjct: 170 VFGQVERAVVIVDDRGRPSGKG 191
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 43.5 bits (101), Expect = 5e-04 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 1/142 (0%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L+VGN+P +T +E+ +F +G EV K G FGF+ + T A Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA--GEVFIHKDKG----FGFIRLETRTLAEIAKVE 128 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L++ + G++++V F + V NL + V+ E+L+ FS Sbjct: 129 LDNMPLRGKQLRVR-------------------FACHSASLTVRNLPQYVSNELLEEAFS 169 Query: 446 EKGEVLSATV-SRIPGTPKSKG 508 G+V A V G P KG Sbjct: 170 VFGQVERAVVIVDDRGRPSGKG 191
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 43.5 bits (101), Expect = 5e-04 Identities = 25/89 (28%), Positives = 40/89 (44%) Frame = +2 Query: 83 RKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 +K+YVGN+P V E+ +F +G + ++ SGR F FV + A+ Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK----SGRGPAFAFVEFEDHRDAEDAVR 64 Query: 263 SLNDTEVGGRKIKVNVTESFLPNIDASAP 349 + + E GR+I+V T P P Sbjct: 65 ARDGYEFDGRRIRVEFTRGVGPRGPGGRP 93
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/74 (31%), Positives = 37/74 (50%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 +YV +P ELS FA G + + +K +G SR +GF+ E+ A ES+ Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152 Query: 269 NDTEVGGRKIKVNV 310 N+ + G ++V V Sbjct: 153 NNYLLMGHLLQVRV 166
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 43.5 bits (101), Expect = 5e-04 Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 1/142 (0%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L+VGN+P +T +E+ +F +G EV K G FGF+ + T A Sbjct: 80 RLFVGNLPPDITEEEMRKLFEKYGKA--GEVFIHKDKG----FGFIRLETRTLAEIAKVE 133 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFS 445 L++ + G++++V F + V NL + V+ E+L+ FS Sbjct: 134 LDNMPLRGKQLRVR-------------------FACHSASLTVRNLPQYVSNELLEEAFS 174 Query: 446 EKGEVLSATV-SRIPGTPKSKG 508 G+V A V G P KG Sbjct: 175 VFGQVERAVVIVDDRGRPSGKG 196
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/79 (29%), Positives = 40/79 (50%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L V N+P + + +FAA GT+ + + K G+ R+FGF+ + EE A + Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 266 LNDTEVGGRKIKVNVTESF 322 N + + +I V +SF Sbjct: 62 FNKSFIDTSRITVEFCKSF 80 Score = 41.6 bits (96), Expect = 0.002 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Frame = +2 Query: 59 EAPEELA-TRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMST 235 E E+LA + +L+V N+P T T ++L +F+ +G + D + + + F F+T Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452 Query: 236 AEEVAAAIESLNDTEVGGRKIKVNVTESFLPN-IDASAPESEPSFVDSQYK 385 E A ++ GR + V LP+ I A E + S YK Sbjct: 453 PEHAVKAYSEVDGQVFQGRMLHV------LPSTIKKEASEDASALGSSSYK 497
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 ++++G +PR + DEL + G + +M D ++G +R + FVT S E AI+ Sbjct: 57 EIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQ 115 Query: 266 LNDTEV-GGRKIKV 304 LN+ E+ GR + V Sbjct: 116 LNNYEIRNGRLLGV 129
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 KL++G + R L A+F HG + ++ D+ S +SR F F+T + A + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS-KSRGFAFITFENPADAKNAAKD 67 Query: 266 LNDTEVGGRKIKV 304 +N + G+ IKV Sbjct: 68 MNGKSLHGKAIKV 80
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 42.7 bits (99), Expect = 0.001 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 16/184 (8%) Frame = +2 Query: 8 RGRRRAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMF-----------AAH 154 RG ++AV V+ S ++ R+LYVGNIP + + F A Sbjct: 156 RGSVQSAVPVVGPSVTCQS------RRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPG 209 Query: 155 GTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLP-- 328 ++ ++ DK F F+ + +E A + + + G+++KV + P Sbjct: 210 NPILLCQINLDK------NFAFIEFRSIDETTAGM-AFDGINFMGQQLKVRRPRDYQPSQ 262 Query: 329 ---NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPK 499 +++A P S VDS K+++G L +T + +K G L A + Sbjct: 263 NTFDMNARMPVSS-IVVDSANKIFIGGLPNYLTEDQVKELLCSFGP-LKAFSLNVDSQGN 320 Query: 500 SKGY 511 SKGY Sbjct: 321 SKGY 324
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/92 (22%), Positives = 48/92 (52%) Frame = +2 Query: 47 SAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVT 226 + + E E + + +YVGN+ + +++ +F+ GT+ R + D++ F F+ Sbjct: 34 NGLQELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFII 93 Query: 227 MSTAEEVAAAIESLNDTEVGGRKIKVNVTESF 322 S +E A++ L+DT++ + I +++ F Sbjct: 94 YSCPDEALNALKYLSDTKLDEKTITIDLDPGF 125
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/75 (32%), Positives = 45/75 (60%) Frame = +2 Query: 92 YVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLN 271 +VGN+ +T ++L F T +R ++ D + RSR FG+V TA+ ++AA+ +L+ Sbjct: 97 HVGNLSFDLTENDLGDFFGEGVTSIR--LVIDPLTERSRGFGYVEFETADTLSAAL-ALS 153 Query: 272 DTEVGGRKIKVNVTE 316 ++ GR +++ V E Sbjct: 154 GEDLMGRPVRITVAE 168
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/78 (24%), Positives = 41/78 (52%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 A + L+V + T +L F +G + R ++Y+K SG+ R + F+ ++ +A Sbjct: 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSA 160 Query: 257 IESLNDTEVGGRKIKVNV 310 + + ++ GR++ V+V Sbjct: 161 YKHADGKKIDGRRVLVDV 178
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 11/104 (10%) Frame = +2 Query: 20 RAAVKVLASSAVMEAPEE---------LATR--KLYVGNIPRTVTNDELSAMFAAHGTVV 166 R + V AS M+A EE +A R K+ + N+P T ++ ++F A+G + Sbjct: 665 RHTLVVRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQL- 723 Query: 167 RAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKI 298 R+ + K+ +R FGF +A E A+++L +T + GR++ Sbjct: 724 RSVRVPKKFDRSARGFGFADFVSAREAENAMDALKNTHLLGRRL 767 Score = 42.0 bits (97), Expect = 0.002 Identities = 35/131 (26%), Positives = 57/131 (43%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAA 253 + + +++V +P T+TND+L F V A V+ RR GFV ++E Sbjct: 1 MESTRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVL------PKRRIGFVGFKSSEAAQQ 54 Query: 254 AIESLNDTEVGGRKIKVNVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLK 433 A+ N T + KI V++ + IDA + S NL +K + +K Sbjct: 55 AVSYFNKTYMRMSKISVDIAKP----IDAEPAHRKDSRTAQPDDALGNNLKRKRDGDTIK 110 Query: 434 NFFSEKGEVLS 466 + S+ E LS Sbjct: 111 D--SKTQEYLS 119
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/90 (25%), Positives = 43/90 (47%) Frame = +2 Query: 62 APEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAE 241 AP+ L + N+ T ++L F +G + + DKYS +S+ FGFV Sbjct: 12 APDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERR 71 Query: 242 EVAAAIESLNDTEVGGRKIKVNVTESFLPN 331 + A++ + V GR+++V + + P+ Sbjct: 72 DAEHALDRTDGKLVDGRELRVTLAKYDRPS 101
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 42.0 bits (97), Expect = 0.002 Identities = 19/78 (24%), Positives = 40/78 (51%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 A + L+V + T +L F +G + R ++Y K SG+ R + F+ ++ +A Sbjct: 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160 Query: 257 IESLNDTEVGGRKIKVNV 310 + + ++ GR++ V+V Sbjct: 161 YKHADGKKIDGRRVLVDV 178
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/57 (35%), Positives = 36/57 (63%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEE 244 L +++VG I T +L+ +F+A+GTV +++ D+ +G S+ +GFVT T +E Sbjct: 30 LIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQE 85
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 42.0 bits (97), Expect = 0.002 Identities = 19/78 (24%), Positives = 40/78 (51%) Frame = +2 Query: 77 ATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA 256 A + L+V + T +L F +G + R ++Y K SG+ R + F+ ++ +A Sbjct: 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160 Query: 257 IESLNDTEVGGRKIKVNV 310 + + ++ GR++ V+V Sbjct: 161 YKHADGKKIDGRRVLVDV 178
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/88 (22%), Positives = 47/88 (53%) Frame = +2 Query: 59 EAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTA 238 E + + + +YVGN+ + ++L +F+ G++ + + D++ F F+ T Sbjct: 38 ELRKSMTSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTP 97 Query: 239 EEVAAAIESLNDTEVGGRKIKVNVTESF 322 +E AA++ L+ T++ R+I +++ F Sbjct: 98 QEALAALKYLSKTKLDDREITIDLDPGF 125
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 41.2 bits (95), Expect = 0.003 Identities = 21/78 (26%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L++ NIP +V+ D+L ++F+++G VV+ K+ + R+ + M + EE A+ L Sbjct: 480 LHLSNIPPSVSEDDLKSLFSSNGGVVKG----FKFFQKDRKMALIQMGSVEEAVQALIEL 535 Query: 269 NDTEVG-GRKIKVNVTES 319 ++ ++G ++V+ ++S Sbjct: 536 HNHDLGENHHLRVSFSKS 553
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 41.2 bits (95), Expect = 0.003 Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 17/220 (7%) Frame = +2 Query: 2 SARGRRRAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSA-----MFAAHG--- 157 S R KV + + E E A R ++VGN+P V ++ A +F +G Sbjct: 132 SKAAEERTKTKVATTVDLKEKELEKADRTVFVGNVPADVITSKIIAKNFKNLFKHYGKID 191 Query: 158 TVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAA--IESLNDTEVGGRKIKVNVTESFLPN 331 ++ + +D++ R F + + + A + + +++ V E Sbjct: 192 SIRYRSISFDEHLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASIAAKELNATVFEDHHLR 251 Query: 332 IDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEK--GEVLSATVSRIPGTPKSK 505 +D S P+ D++ ++VGNL + E L +F+ K +V S + R T K Sbjct: 252 VD---HVSHPAPKDNKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGK 308 Query: 506 GYGXXXXXXXXXXXXXXXXXN-----NTELEGQTIRVNRA 610 G+ + T+ +G+ +R++RA Sbjct: 309 GFALVQFKDTLSVNKALLLNDKPLETGTQKKGRKLRISRA 348
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 41.2 bits (95), Expect = 0.003 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 16/184 (8%) Frame = +2 Query: 8 RGRRRAAVKVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMF-----------AAH 154 RG ++AV V+ S ++ R+LYVGNIP + + F A Sbjct: 165 RGSVQSAVPVVGPSVTCQS------RRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPG 218 Query: 155 GTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFLP-- 328 ++ ++ DK F F+ + +E A + + + G+++KV + P Sbjct: 219 NPILLCQINLDK------NFAFIEFRSIDETTAGM-AFDGINFMGQQLKVRRPRDYQPSQ 271 Query: 329 ---NIDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPK 499 ++++ P S VDS K+++G L +T + +K G L A + Sbjct: 272 NTFDMNSRMPVS-TIVVDSANKIFIGGLPNYLTEDQVKELLCSFGP-LKAFSLNVDSQGN 329 Query: 500 SKGY 511 SKGY Sbjct: 330 SKGY 333
>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) Length = 527 Score = 41.2 bits (95), Expect = 0.003 Identities = 21/78 (26%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = +2 Query: 89 LYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIESL 268 L++ NIP +V+ D+L ++F+++G VV+ K+ + R+ + M + EE A+ L Sbjct: 452 LHLSNIPPSVSEDDLKSLFSSNGGVVKG----FKFFQKDRKMALIQMGSVEEAVQALIEL 507 Query: 269 NDTEVG-GRKIKVNVTES 319 ++ ++G ++V+ ++S Sbjct: 508 HNHDLGENHHLRVSFSKS 525
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 40.8 bits (94), Expect = 0.004 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 14/132 (10%) Frame = +2 Query: 74 LATRKLYVGNIPRTVTNDELSAMFAAHGTV-----VRAEVMYD----KYSGRSRR---FG 217 L +YV + T+TN+ L MF A+ VR+ Y K G RR FG Sbjct: 202 LPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFG 261 Query: 218 FVTMSTAEEVAAAIESLNDTEVGGRK--IKVNVTESFLPNIDASAPESEPSFVDSQYKVY 391 FV+ + AE+ + AIE +N +VG +K V N + E+EP Sbjct: 262 FVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTN 321 Query: 392 VGNLAKKVTTEV 427 V + + +EV Sbjct: 322 VSDSTEPKASEV 333 Score = 36.6 bits (83), Expect = 0.067 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%) Frame = +2 Query: 35 VLASSAVMEAPEELATR-KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 211 V AS+ P + A +++VG + + E+ ++F GTV + + + + +R Sbjct: 27 VHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRL 86 Query: 212 ----FGFVTMSTAEEVAAAIESLNDTEVGGRKIKV 304 FVT + E+V AIE+LN + R+I V Sbjct: 87 VPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVV 121
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 40.8 bits (94), Expect = 0.004 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L++ N+P + DE+ A F + GTV + + DK + S+ FV+ S AA + Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 266 LNDTEVGGR 292 + + GR Sbjct: 375 KDGSTFQGR 383 Score = 37.0 bits (84), Expect = 0.051 Identities = 21/77 (27%), Positives = 39/77 (50%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 +L V +P +T+ L F+ G V ++M + G SR+FGFV + +E A++ Sbjct: 3 RLIVRGLPSYLTDARLREHFSQKGAVTDVKLMR-RPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 266 LNDTEVGGRKIKVNVTE 316 N T + +I + + + Sbjct: 62 FNRTFIDTSRISIELAK 78
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 40.4 bits (93), Expect = 0.005 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 10/139 (7%) Frame = +2 Query: 95 VGNIPR----TVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIE 262 V N+P T D L + HG V +V+ S R+ V ++V A+E Sbjct: 558 VRNLPARSSDTSLKDGLFHEYKKHGKVTWVKVV----GQNSERYALVCFKKPDDVEKALE 613 Query: 263 SLNDTEVGGRKIKV------NVTESFLPNIDASAPESEPSFVDSQYKVYVGNLAKKVTTE 424 +D G KI+V +V ++ +A E P S +++GNL K +T Sbjct: 614 VSHDKHFFGCKIEVEPYQGYDVEDNEFRPYEAELDEYHPK---STRTLFIGNLEKDITAG 670 Query: 425 VLKNFFSEKGEVLSATVSR 481 L++ F GE++ + + Sbjct: 671 ELRSHFEAFGEIIEIDIKK 689
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/91 (27%), Positives = 45/91 (49%) Frame = +2 Query: 86 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 265 K+ + N+P T ++ +F A G++ V K++ SR F F +A+E A+ + Sbjct: 704 KILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAMSA 762 Query: 266 LNDTEVGGRKIKVNVTESFLPNIDASAPESE 358 L T + GR++ + ++ DAS E E Sbjct: 763 LQGTHLLGRRLVLQYAQA-----DASNAEEE 788 Score = 35.0 bits (79), Expect = 0.20 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = +2 Query: 197 GRSRRFGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTESFL-PNIDASAPE 352 G++RRFGFV + E AA++ + + + KI V V +F PN+ S+ E Sbjct: 49 GKTRRFGFVGFRSDETAEAAVKYFDTSFINSTKISVAVAMTFTDPNVPLSSRE 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,216,130 Number of Sequences: 219361 Number of extensions: 1739336 Number of successful extensions: 7595 Number of sequences better than 10.0: 396 Number of HSP's better than 10.0 without gapping: 5924 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7395 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
