| Clone Name | bags13n08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102436.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093J18, full insert sequence Length = 1094 Score = 361 bits (182), Expect = 2e-96 Identities = 437/522 (83%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| | ||||| | || |||| |||| ||||||||| Sbjct: 56 gtgtgcgtcaccggcgccggggggttcatggcctcgtcgcacgtcgagctgctcctctcc 115 Query: 93 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 152 || ||||| | ||||||||||||||||| ||||| ||| |||| ||||||| |||| Sbjct: 116 cgggggaactacgcggtccgcggcaccgtgcgggatccaggtgatgccaagaatgatcat 175 Query: 153 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 212 |||| ||||||| ||||||| | ||| ||| |||||||||||| ||||| ||| ||||| Sbjct: 176 ctcagggcgctacaaggtgccgaggagaggttgcagctgctcaaggctgatctgttggac 235 Query: 213 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 272 || ||||| | || || |||||||| ||||||||||||||||||||||| || |||||| Sbjct: 236 tatgacagtgtagcttcagcggttgccggctgtgagggcgtcttccatgtcgccagccct 295 Query: 273 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 332 || || || || |||| ||||||||||||| ||| || ||||| ||||||||||||||| Sbjct: 296 gtaccctcgggccgatccaccaaccctgaggtagaggtcatagctcctgctgtaacaggc 355 Query: 333 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 392 ||||| |||||||||||||| ||| | |||||||||||||||||||||||||| |||||| Sbjct: 356 acacttaatgtgttgaaggcctgccatgaggcaaaagttaagcgagttgtcatggtgtct 415 Query: 393 tcatgtgctgctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagac 452 || |||||| ||||||| |||||||||||||| |||| || | || ||||||||| Sbjct: 416 tccattgctgccgtgttcagtaatcctaactggccaaaggataaggctttcactgaagac 475 Query: 453 agctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacg 512 || |||||||| ||||| | ||||||||| | |||||||||||| ||||| |||||| Sbjct: 476 agttggtcagatgaggaattatgcagaaagaatcaggattggtattacctttcgaaaacg 535 Query: 513 cgcgcagagcgtgaggcttttgcttatgcagcgaaaactggg 554 ||||||||||||||||||||||||||||| ||||||||| Sbjct: 536 gtggcagagcgtgaggcttttgcttatgcagcaaaaactggg 577
>gb|AY103770.1| Zea mays PCO100327 mRNA sequence Length = 1333 Score = 222 bits (112), Expect = 1e-54 Identities = 310/376 (82%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||||||||||| || ||||||||||| || ||| || ||||||||||||||| Sbjct: 144 gtgtgcgtgaccggcgctggcggcttcgtcgcgtcggagctggtgaagctcctcctctcc 203 Query: 93 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 152 || ||| ||| | |||||||||||||||||||| || ||| | |||||||| ||| Sbjct: 204 cggggccaatacgcggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgcccat 263 Query: 153 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 212 ||||||| ||| ||||| |||| ||||||| ||||||| |||| ||||| ||| ||||| Sbjct: 264 ctcaaggtgctggaaggagctgaggaaaggttgcagcttctcaaggctgatctgatggac 323 Query: 213 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 272 |||||||||||||| || || ||||| ||||||||||| ||||||||||| ||||||||| Sbjct: 324 tacgacagcattgcatcagcagttgccggctgtgagggtgtcttccatgtagctagccct 383 Query: 273 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 332 |||| ||| | || | |||||||||||| || || ||||| || ||||||| ||| Sbjct: 384 gtcctttcccatcgaccctccaaccctgaggtggaggtcatagctcccgctgtaataggt 443 Query: 333 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 392 ||| |||||||| ||||||||| | ||||||||||||| ||||||||| | |||||| Sbjct: 444 acaaccaatgtgttaaaggcttgctatgaggcaaaagttaggcgagttgtggtggtgtct 503 Query: 393 tcatgtgctgctgtgt 408 ||||||| ||||||| Sbjct: 504 tcatgtggagctgtgt 519 Score = 44.1 bits (22), Expect = 0.48 Identities = 55/66 (83%) Strand = Plus / Plus Query: 446 tgaagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttc 505 ||||||| |||||||||| |||||| ||||| ||| |||||||||||||| |||| Sbjct: 556 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 615 Query: 506 caaaac 511 |||||| Sbjct: 616 caaaac 621
>gb|BT018028.1| Zea mays clone EL01N0529H05.c mRNA sequence Length = 1336 Score = 210 bits (106), Expect = 4e-51 Identities = 307/374 (82%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||||||||||| || |||||| |||| ||||| || || ||||||||||||| | Sbjct: 69 gtgtgcgtgaccggcgcgggcggcttcatcgcgtcatgtctggtgaagctcctcctctgc 128 Query: 93 aaggcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcat 152 || ||| |||| |||||||||||||||||||| || ||| | |||||||||||| Sbjct: 129 cggggccaatacaaggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgctcat 188 Query: 153 ctcaaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggac 212 ||||||| ||| ||||| |||||||||||| ||||||| ||| ||||| || ||||| Sbjct: 189 ctcaaggtgctggaaggggctggggaaaggttgcagcttgtcaaggctgatttgttggac 248 Query: 213 tacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccct 272 ||| ||| |||| || || |||| ||||||||||| ||||||||||| ||||||||| Sbjct: 249 tacagcagtgttgcatcagcaattgccggctgtgagggtgtcttccatgtagctagccct 308 Query: 273 gtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggc 332 |||||||| ||| | || |||||||||||| || || |||| |||||||||||||| Sbjct: 309 gtcccttccggtcggtcctccaaccctgaggtggaggtcataggtcctgctgtaacaggt 368 Query: 333 acactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtct 392 ||| | |||||||| ||||||||| | |||||||||||| ||||||||| | || ||| Sbjct: 369 acaatcaatgtgttaaaggcttgctatgaggcaaaagttgggcgagttgtggtggtctct 428 Query: 393 tcatgtgctgctgt 406 |||||||| ||||| Sbjct: 429 tcatgtgcagctgt 442 Score = 42.1 bits (21), Expect = 1.9 Identities = 54/65 (83%) Strand = Plus / Plus Query: 486 gaggattggtatttgctttccaaaacgcgcgcagagcgtgaggcttttgcttatgcagcg 545 |||||||||||||| ||||||| || | || || || |||||||||| ||||||||| Sbjct: 522 gaggattggtattttgtttccaagacactggcggaacgagaggcttttgtttatgcagca 581 Query: 546 aaaac 550 ||||| Sbjct: 582 aaaac 586
>gb|AY107063.1| Zea mays PCO100324 mRNA sequence Length = 999 Score = 176 bits (89), Expect = 5e-41 Identities = 404/509 (79%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctccaag 95 |||||||||||||| ||||||||| |||| || |||||||| ||||||||||||||| Sbjct: 205 tgcgtgaccggcgcgggaggcttcatcgcgtcttggctcgtgaagctcctcctctcccgt 264 Query: 96 gcccactacactgtccgcggcaccgtgcgcgatcccggtaatgctaagaatgctcatctc 155 | || ||| |||||||||||||||||||| || ||| | ||||||||||||||| Sbjct: 265 ggtcagtacgtggtccgcggcaccgtgcgcgaccctggtgctagcaagaatgctcatctc 324 Query: 156 aaggcgctagaaggtgctggggaaaggctgcagctgctcagcgctgacctgctggactac 215 |||| | | || | |||||||||||| ||||||| ||| ||||| || |||||||| Sbjct: 325 aaggagttggagcgggctggggaaaggttgcagcttctccaggctgatttgttggactac 384 Query: 216 gacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttgctagccctgtc 275 ||| |||| || || |||||||||||||||| ||||||||||| ||| |||||||| Sbjct: 385 agcagtgttgcatcagcaattgctggctgtgagggtgtcttccatgtagcttgccctgtc 444 Query: 276 ccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctgtaacaggcaca 335 ||||||||| | || ||||||| ||| || || |||| ||||||||| ||| ||| Sbjct: 445 ccttctggtcggtcctccaaccccaaggtggaggtcataggtcctgctgtagtaggaaca 504 Query: 336 ctgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtcatagtgtcttca 395 |||||||| ||||||||| | ||||||||||||||||||||||| | |||||||| Sbjct: 505 accaatgtgttaaaggcttgctatgaggcaaaagttaagcgagttgtggtggtgtcttct 564 Query: 396 tgtgctgctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagacagc 455 | | ||||| |||| || ||||| ||||| |||| ||| || ||| ||||||| Sbjct: 565 gtttcagctgtattcagtaaccctaattggcctaaggacaaggtctttgatgaagactct 624 Query: 456 tggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacgcgc 515 ||||||||||||||| ||||| ||| |||||||||||||| ||||| ||||| | Sbjct: 625 tggtcagacgaggattattgcaggaagaatgaggattggtattatctttctaaaactcta 684 Query: 516 gcagagcgtgaggcttttgcttatgcagc 544 | || |||||||||||||||| |||||| Sbjct: 685 tccgaacgtgaggcttttgcttttgcagc 713
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 149 bits (75), Expect = 1e-32 Identities = 147/171 (85%) Strand = Plus / Minus Query: 312 atagcccctgctgtaacaggcacactgaatgtgttgaaggcttgcaacgaggcaaaagtt 371 ||||| |||||||||||||||||||| |||||||||||||| ||| | |||||||||||| Sbjct: 24691679 atagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatgaggcaaaagtt 24691620 Query: 372 aagcgagttgtcatagtgtcttcatgtgctgctgtgttcaacaatcctaactggcccaag 431 |||||||||||||| |||||||| |||||| ||||||| |||||||||||||| ||| Sbjct: 24691619 aagcgagttgtcatggtgtcttccattgctgccgtgttcagtaatcctaactggccaaag 24691560 Query: 432 ggcaaagtatttactgaagacagctggtcagacgaggatctgtgcagaaag 482 | || | || ||||||||||| |||||||| ||||| | ||||||||| Sbjct: 24691559 gataaggctttcactgaagacagttggtcagatgaggaattatgcagaaag 24691509 Score = 119 bits (60), Expect = 1e-23 Identities = 141/168 (83%) Strand = Plus / Minus Query: 136 atgctaagaatgctcatctcaaggcgctagaaggtgctggggaaaggctgcagctgctca 195 |||| ||||||| |||||||| ||||||| ||||||| | ||| ||| |||||||||||| Sbjct: 24692171 atgccaagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctca 24692112 Query: 196 gcgctgacctgctggactacgacagcattgcgtcggcggttgctggctgtgagggcgtct 255 ||||| ||| ||||||| ||||| | || || |||||||| |||||||||||||||| Sbjct: 24692111 aggctgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtct 24692052 Query: 256 tccatgttgctagccctgtcccttctggtagatcgaccaaccctgagg 303 ||||||| || |||||||| || || || |||| ||||||||||||| Sbjct: 24692051 tccatgtcgccagccctgtaccctcgggccgatccaccaaccctgagg 24692004 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||||||||||| || |||||||| || || |||||||||||||||||||||||| Sbjct: 24706381 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 24706322 Score = 79.8 bits (40), Expect = 9e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 487 aggattggtatttgctttccaaaacgcgcgcagagcgtgaggcttttgcttatgcagcga 546 |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| | Sbjct: 24691224 aggattggtattacctttcgaaaacggtggcagagcgtgaggcttttgcttatgcagcaa 24691165 Query: 547 aaactggg 554 |||||||| Sbjct: 24691164 aaactggg 24691157 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || |||||||||||||| ||||||||| | | |||||||||| Sbjct: 24687296 gtgtgcgtcaccggcgccggcggcttcgtcgcctcgtggctcgtccatcgcctcctctcc 24687237 Score = 44.1 bits (22), Expect = 0.48 Identities = 79/98 (80%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| | ||||| | || |||| |||| ||||||||| Sbjct: 24692747 gtgtgcgtcaccggcgccggggggttcatggcctcgtcgcacgtcgagctgctcctctcc 24692688 Query: 93 aaggcccactacactgtccgcggcaccgtgcgcgatcc 130 || ||||| | ||||||||||||||||| ||||| Sbjct: 24692687 cgggggaactacgcggtccgcggcaccgtgcgggatcc 24692650
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0029G06 Length = 169711 Score = 149 bits (75), Expect = 1e-32 Identities = 147/171 (85%) Strand = Plus / Minus Query: 312 atagcccctgctgtaacaggcacactgaatgtgttgaaggcttgcaacgaggcaaaagtt 371 ||||| |||||||||||||||||||| |||||||||||||| ||| | |||||||||||| Sbjct: 25360 atagctcctgctgtaacaggcacacttaatgtgttgaaggcctgccatgaggcaaaagtt 25301 Query: 372 aagcgagttgtcatagtgtcttcatgtgctgctgtgttcaacaatcctaactggcccaag 431 |||||||||||||| |||||||| |||||| ||||||| |||||||||||||| ||| Sbjct: 25300 aagcgagttgtcatggtgtcttccattgctgccgtgttcagtaatcctaactggccaaag 25241 Query: 432 ggcaaagtatttactgaagacagctggtcagacgaggatctgtgcagaaag 482 | || | || ||||||||||| |||||||| ||||| | ||||||||| Sbjct: 25240 gataaggctttcactgaagacagttggtcagatgaggaattatgcagaaag 25190 Score = 119 bits (60), Expect = 1e-23 Identities = 141/168 (83%) Strand = Plus / Minus Query: 136 atgctaagaatgctcatctcaaggcgctagaaggtgctggggaaaggctgcagctgctca 195 |||| ||||||| |||||||| ||||||| ||||||| | ||| ||| |||||||||||| Sbjct: 25852 atgccaagaatgatcatctcagggcgctacaaggtgccgaggagaggttgcagctgctca 25793 Query: 196 gcgctgacctgctggactacgacagcattgcgtcggcggttgctggctgtgagggcgtct 255 ||||| ||| ||||||| ||||| | || || |||||||| |||||||||||||||| Sbjct: 25792 aggctgatctgttggactatgacagtgtagcttcagcggttgccggctgtgagggcgtct 25733 Query: 256 tccatgttgctagccctgtcccttctggtagatcgaccaaccctgagg 303 ||||||| || |||||||| || || || |||| ||||||||||||| Sbjct: 25732 tccatgtcgccagccctgtaccctcgggccgatccaccaaccctgagg 25685 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||||||||||| || |||||||| || || |||||||||||||||||||||||| Sbjct: 40062 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 40003 Score = 79.8 bits (40), Expect = 9e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 487 aggattggtatttgctttccaaaacgcgcgcagagcgtgaggcttttgcttatgcagcga 546 |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| | Sbjct: 24905 aggattggtattacctttcgaaaacggtggcagagcgtgaggcttttgcttatgcagcaa 24846 Query: 547 aaactggg 554 |||||||| Sbjct: 24845 aaactggg 24838 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || |||||||||||||| ||||||||| | | |||||||||| Sbjct: 20977 gtgtgcgtcaccggcgccggcggcttcgtcgcctcgtggctcgtccatcgcctcctctcc 20918 Score = 44.1 bits (22), Expect = 0.48 Identities = 79/98 (80%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| | ||||| | || |||| |||| ||||||||| Sbjct: 26428 gtgtgcgtcaccggcgccggggggttcatggcctcgtcgcacgtcgagctgctcctctcc 26369 Query: 93 aaggcccactacactgtccgcggcaccgtgcgcgatcc 130 || ||||| | ||||||||||||||||| ||||| Sbjct: 26368 cgggggaactacgcggtccgcggcaccgtgcgggatcc 26331
>ref|XM_480400.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 79.8 bits (40), Expect = 9e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||||||| ||||| |||||||||||||||||| Sbjct: 34 gtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctcc 93 Query: 93 aaggcccactac 104 |||| ||||||| Sbjct: 94 aaggaccactac 105 Score = 69.9 bits (35), Expect = 8e-09 Identities = 176/223 (78%) Strand = Plus / Plus Query: 205 tgctggactacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttg 264 |||| ||||||| |||| | ||| ||||| | || ||||| || |||||||||||||| | Sbjct: 230 tgctcgactacggcagcgtcgcggcggcgatcgccggctgcgacggcgtcttccatgtcg 289 Query: 265 ctagccctgtcccttctggtagatcgaccaaccctgaggaagaagttatagcccctgctg 324 | ||||||||| | || || || | ||||| ||||||| ||| | || || | |||| Sbjct: 290 ccagccctgtcacctccggccgacccaccaatcctgaggtagatatcatcgctacggctg 349 Query: 325 taacaggcacactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagttgtca 384 |||| || |||||||||||||||| ||| || |||| |||||||| ||||||||||| Sbjct: 350 taactgggacactgaatgtgttgagagctagccacgaagcaaaagtgaagcgagttgtgg 409 Query: 385 tagtgtcttcatgtgctgctgtgttcaacaatcctaactggcc 427 | || |||||| || || |||||||| ||||| |||||||| Sbjct: 410 tggtttcttcagttgtcgcagtgttcaataatcccaactggcc 452 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Plus Query: 516 gcagagcgtgaggcttttgcttatgcagcgaaaactgggatgg 558 ||||||||||||||||||| || || || ||||||||||||| Sbjct: 547 gcagagcgtgaggcttttgagtacgcggcaaaaactgggatgg 589
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 9e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||||||| ||||| |||||||||||||||||| Sbjct: 4893882 gtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctcc 4893823 Query: 93 aaggcccactac 104 |||| ||||||| Sbjct: 4893822 aaggaccactac 4893811 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 321 gctgtaacaggcacactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagtt 380 |||||||| || |||||||||||||||| ||| || |||| |||||||| ||||||||| Sbjct: 4893253 gctgtaactgggacactgaatgtgttgagagctagccacgaagcaaaagtgaagcgagtt 4893194 Query: 381 gtcatagtgtcttcatgtgctgctgtgttcaacaatcctaactggcc 427 || | || |||||| || || |||||||| ||||| |||||||| Sbjct: 4893193 gtggtggtttcttcagttgtcgcagtgttcaataatcccaactggcc 4893147 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctc 89 ||||| |||||||| || || ||| |||| || ||||||||||||||||||||| Sbjct: 10712452 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctc 10712505 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Minus Query: 205 tgctggactacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttg 264 |||| ||||||| |||| | ||| ||||| | || ||||| || |||||||||||||| | Sbjct: 4893594 tgctcgactacggcagcgtcgcggcggcgatcgccggctgcgacggcgtcttccatgtcg 4893535 Query: 265 ctagccctgtc 275 | ||||||||| Sbjct: 4893534 ccagccctgtc 4893524 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 516 gcagagcgtgaggcttttgcttatgcagcgaaaactgggatgg 558 ||||||||||||||||||| || || || ||||||||||||| Sbjct: 4892663 gcagagcgtgaggcttttgagtacgcggcaaaaactgggatgg 4892621
>dbj|AP004646.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1122_A12 Length = 149011 Score = 79.8 bits (40), Expect = 9e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||||||| ||||| |||||||||||||||||| Sbjct: 53136 gtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctcc 53077 Query: 93 aaggcccactac 104 |||| ||||||| Sbjct: 53076 aaggaccactac 53065 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 321 gctgtaacaggcacactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagtt 380 |||||||| || |||||||||||||||| ||| || |||| |||||||| ||||||||| Sbjct: 52507 gctgtaactgggacactgaatgtgttgagagctagccacgaagcaaaagtgaagcgagtt 52448 Query: 381 gtcatagtgtcttcatgtgctgctgtgttcaacaatcctaactggcc 427 || | || |||||| || || |||||||| ||||| |||||||| Sbjct: 52447 gtggtggtttcttcagttgtcgcagtgttcaataatcccaactggcc 52401 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Minus Query: 205 tgctggactacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttg 264 |||| ||||||| |||| | ||| ||||| | || ||||| || |||||||||||||| | Sbjct: 52848 tgctcgactacggcagcgtcgcggcggcgatcgccggctgcgacggcgtcttccatgtcg 52789 Query: 265 ctagccctgtc 275 | ||||||||| Sbjct: 52788 ccagccctgtc 52778 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 516 gcagagcgtgaggcttttgcttatgcagcgaaaactgggatgg 558 ||||||||||||||||||| || || || ||||||||||||| Sbjct: 51917 gcagagcgtgaggcttttgagtacgcggcaaaaactgggatgg 51875
>dbj|AP005440.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056D04 Length = 158118 Score = 79.8 bits (40), Expect = 9e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||||||| ||||| |||||||||||||||||| Sbjct: 98676 gtgtgcgtcaccggcgccggcggattcctcgcctcgtggctggtcaagctcctcctctcc 98617 Query: 93 aaggcccactac 104 |||| ||||||| Sbjct: 98616 aaggaccactac 98605 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Minus Query: 321 gctgtaacaggcacactgaatgtgttgaaggcttgcaacgaggcaaaagttaagcgagtt 380 |||||||| || |||||||||||||||| ||| || |||| |||||||| ||||||||| Sbjct: 98047 gctgtaactgggacactgaatgtgttgagagctagccacgaagcaaaagtgaagcgagtt 97988 Query: 381 gtcatagtgtcttcatgtgctgctgtgttcaacaatcctaactggcc 427 || | || |||||| || || |||||||| ||||| |||||||| Sbjct: 97987 gtggtggtttcttcagttgtcgcagtgttcaataatcccaactggcc 97941 Score = 46.1 bits (23), Expect = 0.12 Identities = 59/71 (83%) Strand = Plus / Minus Query: 205 tgctggactacgacagcattgcgtcggcggttgctggctgtgagggcgtcttccatgttg 264 |||| ||||||| |||| | ||| ||||| | || ||||| || |||||||||||||| | Sbjct: 98388 tgctcgactacggcagcgtcgcggcggcgatcgccggctgcgacggcgtcttccatgtcg 98329 Query: 265 ctagccctgtc 275 | ||||||||| Sbjct: 98328 ccagccctgtc 98318 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Minus Query: 516 gcagagcgtgaggcttttgcttatgcagcgaaaactgggatgg 558 ||||||||||||||||||| || || || ||||||||||||| Sbjct: 97457 gcagagcgtgaggcttttgagtacgcggcaaaaactgggatgg 97415
>dbj|AK073641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052J24, full insert sequence Length = 1232 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||||||||||| || |||||||| || || |||||||||||||||||||||||| Sbjct: 55 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 114
>dbj|AK063958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G03, full insert sequence Length = 1737 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||||||||||| || |||||||| || || |||||||||||||||||||||||| Sbjct: 502 gtgtgcgtgaccggcgccgggggcttcgtggcgtcgtggctcgtcaagctcctcctctcc 561
>gb|AY111471.1| Zea mays CL42025_1 mRNA sequence Length = 830 Score = 69.9 bits (35), Expect = 8e-09 Identities = 122/153 (79%) Strand = Plus / Minus Query: 402 gctgtgttcaacaatcctaactggcccaagggcaaagtatttactgaagacagctggtca 461 ||||||||||| |||||| ||||||| |||||| | | |||||||| || ||||||||| Sbjct: 779 gctgtgttcaataatcctgactggcctaagggcgaggcctttactgaggatagctggtca 720 Query: 462 gacgaggatctgtgcagaaagggtgaggattggtatttgctttccaaaacgcgcgcagag 521 || | ||| ||||| |||||| |||||||| ||||| ||||| ||||| Sbjct: 719 gatggggaatattgcagnnnnnntgaggaatggtatttcctttctaaaacattggcagaa 660 Query: 522 cgtgaggcttttgcttatgcagcgaaaactggg 554 | ||||||||||||||||||||| ||||||||| Sbjct: 659 catgaggcttttgcttatgcagccaaaactggg 627
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 28 gcgttgtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcc 87 |||| |||||||| |||||||| || || ||||||| ||| ||||||||| ||||||||| Sbjct: 16250 gcgtcgtgtgcgtcaccggcgccggcgggttcgtcggctcgtggctcgtcgagctcctcc 16309 Query: 88 tctcc 92 ||||| Sbjct: 16310 tctcc 16314 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||||||||||| || || ||| || ||| |||||||||||||||||||||||| Sbjct: 42147 gtgtgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcctctcc 42206 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||| ||| |||||||||||||||||||||||| Sbjct: 35497 gtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctcc 35556 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||| ||| |||||||||||||||||||||||| Sbjct: 26410 gtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctcc 26469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||| ||| ||||||||||| |||||||||||| Sbjct: 21825 gtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaatctcctcctctcc 21884 Score = 48.1 bits (24), Expect = 0.031 Identities = 30/32 (93%) Strand = Plus / Plus Query: 61 tcgcctcatggctcgtcaagctcctcctctcc 92 ||||||| |||||||||||||| ||||||||| Sbjct: 6438 tcgcctcctggctcgtcaagctgctcctctcc 6469
>dbj|AK062287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E03, full insert sequence Length = 1272 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 28 gcgttgtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcc 87 |||| |||||||| |||||||| || || ||||||| ||| ||||||||| ||||||||| Sbjct: 100 gcgtcgtgtgcgtcaccggcgccggcgggttcgtcggctcgtggctcgtcgagctcctcc 159 Query: 88 tctcc 92 ||||| Sbjct: 160 tctcc 164
>gb|AY771357.1| Triticum aestivum cultivar H4564 cinnamoyl-CoA reductase mRNA, complete cds Length = 1489 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 88 |||||||| |||||||| || |||||| ||||||| ||||||||||||| |||||| Sbjct: 215 gtgtgcgtcaccggcgccggcggcttcatcgcctcgtggctcgtcaagcgcctcct 270
>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0040H10 Length = 173301 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || |||||||||||||| ||||||||| | | |||||||||| Sbjct: 170489 gtgtgcgtcaccggcgccggcggcttcgtcgcctcgtggctcgtccatcgcctcctctcc 170430
>dbj|AK107469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B02, full insert sequence Length = 1507 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || |||||||||||||| ||||||||| | | |||||||||| Sbjct: 81 gtgtgcgtcaccggcgccggcggcttcgtcgcctcgtggctcgtccatcgcctcctctcc 140
>dbj|AK073442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044G18, full insert sequence Length = 1342 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||||||||||| || || ||| || ||| |||||||||||||||||||||||| Sbjct: 91 gtgtgcgtgaccggcgccggcgggttcaccggctcgtggctcgtcaagctcctcctctcc 150
>dbj|AK068648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159B10, full insert sequence Length = 1452 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||| ||| |||||||||||||||||||||||| Sbjct: 131 gtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctcc 190
>dbj|AK062138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F11, full insert sequence Length = 1270 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 |||||||| |||||||| || || ||| ||| ||| |||||||||||||||||||||||| Sbjct: 130 gtgtgcgtcaccggcgccggcgggttcatcggctcgtggctcgtcaagctcctcctctcc 189
>gb|AY108351.1| Zea mays PCO122024 mRNA sequence Length = 1233 Score = 60.0 bits (30), Expect = 8e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 35 gtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctctcc 92 ||||||||| ||||| || || | | ||||||| |||||||||||||||||||||||| Sbjct: 139 gtgcgtgacgggcgccggcgggtacatcgcctcgtggctcgtcaagctcctcctctcc 196
>ref|XM_481219.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1420 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctc 89 ||||| |||||||| || || ||| |||| || ||||||||||||||||||||| Sbjct: 214 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctc 267
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctc 89 ||||| |||||||| || || ||| |||| || ||||||||||||||||||||| Sbjct: 9584 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctc 9637
>dbj|AK106439.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D08, full insert sequence Length = 1420 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctc 89 ||||| |||||||| || || ||| |||| || ||||||||||||||||||||| Sbjct: 214 tgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagctcctcctc 267
>ref|XM_450149.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1614 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctc 89 |||||||| |||||||| || || ||| |||| || ||||||||||||| ||||||| Sbjct: 273 gtgtgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctc 329
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctc 89 |||||||| |||||||| || || ||| |||| || ||||||||||||| ||||||| Sbjct: 2033013 gtgtgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctc 2032957 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 53 aggcttcgtcgcctcatggctcgtcaag 80 ||||||||||||||| |||||| ||||| Sbjct: 18825243 aggcttcgtcgcctcttggctcatcaag 18825216
>gb|AY227672.1| Zea mays genotype Mo17 cinnamoyl-CoA reductase (ccr2) gene, promoter region, exons 1 through 5, and complete cds Length = 2937 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 88 ||||||||||| || ||||| ||| | ||||| ||||||||||||| |||||| Sbjct: 1216 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 1268
>gb|AY227671.1| Zea mays genotype F288 cinnamoyl-CoA reductase (ccr2) gene, promoter region, exons 1 through 5, and complete cds Length = 2942 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 88 ||||||||||| || ||||| ||| | ||||| ||||||||||||| |||||| Sbjct: 1222 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 1274
>gb|AY227670.1| Zea mays genotype MBS847 cinnamoyl-CoA reductase (ccr2) gene, promoter region, exons 1 through 5, and complete cds Length = 2937 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 88 ||||||||||| || ||||| ||| | ||||| ||||||||||||| |||||| Sbjct: 1216 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 1268
>gb|AY227669.1| Zea mays genotype F271 cinnamoyl-CoA reductase (ccr2) gene, promoter region, exons 1 through 5, and complete cds Length = 2937 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 88 ||||||||||| || ||||| ||| | ||||| ||||||||||||| |||||| Sbjct: 1216 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 1268
>gb|AY227668.1| Zea mays genotype F7025 cinnamoyl-CoA reductase (ccr2) gene, promoter region, exons 1 through 5, and complete cds Length = 2937 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 88 ||||||||||| || ||||| ||| | ||||| ||||||||||||| |||||| Sbjct: 1177 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 1229
>gb|AY227029.1| Zea mays genotype B73 cinnamoyl-CoA reductase (ccr2) gene, promoter region, exons 1 through 5, and complete cds Length = 2966 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 88 ||||||||||| || ||||| ||| | ||||| ||||||||||||| |||||| Sbjct: 1206 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 1258
>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1352_A10 Length = 111655 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctc 89 |||||||| |||||||| || || ||| |||| || ||||||||||||| ||||||| Sbjct: 68380 gtgtgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctc 68324
>emb|Y15069.1|ZMCCR2 Zea mays mRNA for cinnamoyl-CoA reductase Length = 1468 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 36 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 88 ||||||||||| || ||||| ||| | ||||| ||||||||||||| |||||| Sbjct: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
>dbj|AK100234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051O20, full insert sequence Length = 1612 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcctc 89 |||||||| |||||||| || || ||| |||| || ||||||||||||| ||||||| Sbjct: 273 gtgtgcgtcaccggcgccggcgggttcatcgcgtcgtggctcgtcaagcgcctcctc 329
>emb|X88797.1|EGRNACAD1 E.gunnii mRNA for cinnamyl alcohol dehydrogenase Length = 1225 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 61 tcgcctcatggctcgtcaagctcctcct 88 ||||||| |||||||||||||||||||| Sbjct: 128 tcgcctcgtggctcgtcaagctcctcct 155
>gb|BT017666.1| Zea mays clone EL01N0441F03.c mRNA sequence Length = 869 Score = 44.1 bits (22), Expect = 0.48 Identities = 55/66 (83%) Strand = Plus / Plus Query: 446 tgaagacagctggtcagacgaggatctgtgcagaaagggtgaggattggtatttgctttc 505 ||||||| |||||||||| |||||| ||||| ||| |||||||||||||| |||| Sbjct: 76 tgaagactgctggtcagatgaggattactgcaggaagaaggaggattggtatttagtttc 135 Query: 506 caaaac 511 |||||| Sbjct: 136 caaaac 141
>gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, complete sequence Length = 192324 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 agaaggtgctggggaaaggctg 185 |||||||||||||||||||||| Sbjct: 73720 agaaggtgctggggaaaggctg 73741
>emb|Z74618.1|HSLUCA1 Human DNA sequence from clone XXcos-1 on chromosome 3, complete sequence Length = 30377 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 164 agaaggtgctggggaaaggctg 185 |||||||||||||||||||||| Sbjct: 1483 agaaggtgctggggaaaggctg 1504
>ref|NM_121949.2| Arabidopsis thaliana alcohol dehydrogenase AT5G19440 mRNA, complete cds Length = 1273 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 tcgcctcatggctcgtcaagctcct 85 |||||||||||||||||||| |||| Sbjct: 129 tcgcctcatggctcgtcaagttcct 153
>ref|NM_187716.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 981 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggct 73 ||||||||||||||||| || |||||| ||| |||||||| Sbjct: 25 gtgtgcgtgaccggcgccggtggcttcatcgggtcatggct 65
>gb|AF101045.1| Oryza sativa (japonica cultivar-group) putative ADP-glucose pyrophosphorylase subunit SH2 and putative transcription factor X1, putative transcription factor X2 and putative NADPH-dependent reductase A1 genes, complete cds Length = 29877 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 27191 ggcttcgtcggctcatggctcgtca 27215
>gb|U70541.1|OSU70541 Oryza sativa (indica cultivar-group) putative ADP-glucose pyrophosphorylase subunit SH2 and putative NADPH-dependent reductase A1 genes, complete cds Length = 30034 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 26955 ggcttcgtcggctcatggctcgtca 26979
>ref|XM_781914.1| PREDICTED: Strongylocentrotus purpuratus similar to Exportin-7 (Ran-binding protein 16) (LOC581937), mRNA Length = 3183 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 tcgtcaagctcctcctctcca 93 ||||||||||||||||||||| Sbjct: 2594 tcgtcaagctcctcctctcca 2614
>gb|BT024722.1| Arabidopsis thaliana At5g19440 mRNA, complete cds Length = 981 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 tcgcctcatggctcgtcaagctcct 85 |||||||||||||||||||| |||| Sbjct: 56 tcgcctcatggctcgtcaagttcct 80
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 25378974 ggcttcgtcggctcatggctcgtca 25378998 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggct 73 ||||||||||||||||| || |||||| ||| |||||||| Sbjct: 10142474 gtgtgcgtgaccggcgccggtggcttcatcgggtcatggct 10142514
>emb|BX833200.1|CNS09YNN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL39ZA05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1140 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 tcgcctcatggctcgtcaagctcct 85 |||||||||||||||||||| |||| Sbjct: 97 tcgcctcatggctcgtcaagttcct 121
>gb|AY088448.1| Arabidopsis thaliana clone 6748 mRNA, complete sequence Length = 1205 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 tcgcctcatggctcgtcaagctcct 85 |||||||||||||||||||| |||| Sbjct: 122 tcgcctcatggctcgtcaagttcct 146
>gb|AF296837.1|F7K24 Arabidopsis thaliana BAC F7K24 Length = 103024 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 61 tcgcctcatggctcgtcaagctcct 85 |||||||||||||||||||| |||| Sbjct: 83664 tcgcctcatggctcgtcaagttcct 83688
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggct 73 ||||||||||||||||| || |||||| ||| |||||||| Sbjct: 89943 gtgtgcgtgaccggcgccggtggcttcatcgggtcatggct 89983
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggct 73 ||||||||||||||||| || |||||| ||| |||||||| Sbjct: 7788 gtgtgcgtgaccggcgccggtggcttcatcgggtcatggct 7828
>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0663E10 Length = 162297 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 68974 ggcttcgtcggctcatggctcgtca 68998
>emb|Y07956.1|OSDIHYFLA O.sativa mRNA for dihydroflavonol reductase Length = 1438 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 166 ggcttcgtcggctcatggctcgtca 190
>dbj|AB003495.1| Oryza sativa (japonica cultivar-group) DNA for dihydroflavonol 4-reductase, complete cds Length = 3613 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 928 ggcttcgtcggctcatggctcgtca 952
>gb|U87451.1|OSU87451 Oryza sativa NADPH-dependent reductase A1 gene, partial cds Length = 461 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 22 ggcttcgtcggctcatggctcgtca 46
>dbj|AB010744.1| Oryza sativa (japonica cultivar-group) gene for dihydroflavonol 4-reductase, exon 1, 2, partial sequence Length = 360 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 88 ggcttcgtcggctcatggctcgtca 112
>dbj|AB003496.1| Oryza sativa (japonica cultivar-group) mRNA for dihydroflavonol 4-reductase, complete cds Length = 1480 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 150 ggcttcgtcggctcatggctcgtca 174
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 33 gtgtgcgtgaccggcgcaggaggcttcgtcgcctcatggct 73 ||||||||||||||||| || |||||| ||| |||||||| Sbjct: 67073 gtgtgcgtgaccggcgccggtggcttcatcgggtcatggct 67113
>dbj|AB010745.1| Oryza sativa (japonica cultivar-group) gene for dihydroflavonol 4-reductase, exon 1, 2, partial sequence Length = 360 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 ggcttcgtcgcctcatggctcgtca 78 |||||||||| |||||||||||||| Sbjct: 88 ggcttcgtcggctcatggctcgtca 112
>gb|AY742323.1| Chlamydomonas reinhardtii chloroplast triosephosphate isomerase (TIM) mRNA, complete cds; nuclear gene for chloroplast product Length = 1035 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cagctgctcagcgctgacct 205 |||||||||||||||||||| Sbjct: 396 cagctgctcagcgctgacct 377
>gb|AF134807.3| Oryza sativa putative dihydroflavonol reductase mRNA, complete cds Length = 1185 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 aggcttcgtcgcctcatggctcgtcaag 80 ||||||||||||||| |||||| ||||| Sbjct: 50 aggcttcgtcgcctcttggctcatcaag 77
>gb|AC010976.6| Homo sapiens BAC clone RP11-286H15 from 2, complete sequence Length = 204142 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cctcctctccaaggcccact 102 |||||||||||||||||||| Sbjct: 135156 cctcctctccaaggcccact 135175
>gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, complete sequence Length = 249008 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 aagggtgaggattggtattt 499 |||||||||||||||||||| Sbjct: 185876 aagggtgaggattggtattt 185895
>ref|NM_001007895.1| Xenopus tropicalis grhpr protein (grhpr), mRNA Length = 1306 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cttcatgtgctgctgtgttc 410 |||||||||||||||||||| Sbjct: 68 cttcatgtgctgctgtgttc 49
>gb|BC080331.1| Xenopus tropicalis grhpr protein, mRNA (cDNA clone MGC:79548 IMAGE:6978272), complete cds Length = 1306 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cttcatgtgctgctgtgttc 410 |||||||||||||||||||| Sbjct: 68 cttcatgtgctgctgtgttc 49
>emb|AL596247.22| Human DNA sequence from clone RP11-417O11 on chromosome 10 Contains the 5' end of the CAMK2G gene for calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma, the PLAU gene for plasminogen activator urokinase, three novel genes (FLJ35198), the 5' end of the VCL gene for vinculin and three CpG islands, complete sequence Length = 228098 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 tgctggggaaaggctgcagctgct 193 |||||||||||||||| ||||||| Sbjct: 14982 tgctggggaaaggctggagctgct 14959
>ref|XM_500551.1| Yarrowia lipolytica CLIB122, YALI0B05940g predicted mRNA Length = 9963 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tcaagctcctcctctccaag 95 |||||||||||||||||||| Sbjct: 5915 tcaagctcctcctctccaag 5896
>emb|AL389885.12| Human DNA sequence from clone RP11-391J2 on chromosome 10 Contains a histone deacetylase 1 (HD1, RPD3, RPD3L1) (HDAC1) pseudogene, part of the PLCE1 gene for phospholipase C, epsilon 1 (PLCE, KIAA1516) and a novel gene, complete sequence Length = 101767 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 tcctcctctccaaggcccac 101 |||||||||||||||||||| Sbjct: 32847 tcctcctctccaaggcccac 32828
>emb|AL133377.10| Human DNA sequence from clone RP1-295F6 on chromosome 6 Contains the 3' end of the TEX27 gene for testis expressed sequence 27 (FLJ13222) and a novel gene, complete sequence Length = 69663 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 ctgacctgctggactacgacagca 222 ||||||||||| |||||||||||| Sbjct: 53927 ctgacctgctgaactacgacagca 53904
>dbj|AB110186.1| Oryza sativa (japonica cultivar-group) mRNA for dihydroflavonol reductase, complete cds, clone: 14FPG037 Length = 1194 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 aggcttcgtcgcctcatggctcgtcaag 80 ||||||||||||||| |||||| ||||| Sbjct: 59 aggcttcgtcgcctcttggctcatcaag 86
>dbj|AK128858.1| Homo sapiens cDNA FLJ46664 fis, clone TRACH3007274 Length = 4596 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 ctgacctgctggactacgacagca 222 ||||||||||| |||||||||||| Sbjct: 3574 ctgacctgctgaactacgacagca 3551
>dbj|AK091649.1| Homo sapiens cDNA FLJ34330 fis, clone FEBRA2009120 Length = 2673 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 199 ctgacctgctggactacgacagca 222 ||||||||||| |||||||||||| Sbjct: 1820 ctgacctgctgaactacgacagca 1797
>gb|AY064169.1| Pinus taeda cinnamoyl-CoA reductase mRNA, complete cds Length = 1359 Score = 40.1 bits (20), Expect = 7.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 141 aagaatgctcatctcaaggcgctagaaggtgc 172 |||||||||||||||||| ||| |||||||| Sbjct: 384 aagaatgctcatctcaagcagctggaaggtgc 415
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 aggcttgcaacgaggcaaaa 368 |||||||||||||||||||| Sbjct: 6219595 aggcttgcaacgaggcaaaa 6219576 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 aggcttgcaacgaggcaaaa 368 |||||||||||||||||||| Sbjct: 4931132 aggcttgcaacgaggcaaaa 4931151 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 aggcttgcaacgaggcaaaa 368 |||||||||||||||||||| Sbjct: 3892006 aggcttgcaacgaggcaaaa 3892025 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 aggcttgcaacgaggcaaaa 368 |||||||||||||||||||| Sbjct: 2169730 aggcttgcaacgaggcaaaa 2169749 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 aggcttgcaacgaggcaaaa 368 |||||||||||||||||||| Sbjct: 1973865 aggcttgcaacgaggcaaaa 1973884 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 aggcttgcaacgaggcaaaa 368 |||||||||||||||||||| Sbjct: 1550875 aggcttgcaacgaggcaaaa 1550856 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 aggcttgcaacgaggcaaaa 368 |||||||||||||||||||| Sbjct: 600768 aggcttgcaacgaggcaaaa 600787
>ref|NM_001027182.1| Caenorhabditis elegans T23B7.2 (T23B7.2) mRNA, complete cds Length = 507 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tgaggcttttgcttatgcag 543 |||||||||||||||||||| Sbjct: 224 tgaggcttttgcttatgcag 205
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ctcgtcaagctcctcctctccaag 95 ||||||| |||||||||||||||| Sbjct: 1397349 ctcgtcatgctcctcctctccaag 1397326
>dbj|AK099770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D01, full insert sequence Length = 2836 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 aggcttcgtcgcctcatggctcgtcaag 80 ||||||||||||||| |||||| ||||| Sbjct: 1677 aggcttcgtcgcctcttggctcatcaag 1704
>emb|CR760190.2| Xenopus tropicalis finished cDNA, clone TNeu118d21 Length = 1291 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cttcatgtgctgctgtgttc 410 |||||||||||||||||||| Sbjct: 65 cttcatgtgctgctgtgttc 46
>gb|AC091332.8| Mus musculus chromosome 17, clone RP23-12K1, complete sequence Length = 216370 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cttcatgtgctgctgtgttc 410 |||||||||||||||||||| Sbjct: 22743 cttcatgtgctgctgtgttc 22724
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tcaagctcctcctctccaag 95 |||||||||||||||||||| Sbjct: 800576 tcaagctcctcctctccaag 800557 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,460,816 Number of Sequences: 3902068 Number of extensions: 4460816 Number of successful extensions: 84363 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 83794 Number of HSP's gapped (non-prelim): 560 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)