ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags14b13 |
|---|---|
| Clone Library Name | barley_pub |
>ZFPL1_HUMAN (O95159) Zinc finger protein-like 1 (Zinc-finger protein MCG4)| Length = 310 Score = 88.2 bits (217), Expect = 2e-17 Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 2/100 (2%) Frame = +1 Query: 79 MVVCKC--RKATRVYCFVHQVPVCGECICSPEHQLCVVKNYAEWVVNSDYDWPQHCSLCN 252 M +CKC RK T ++CF H+V VC C+ + H C+V++Y +W+ +SDY+ +C LCN Sbjct: 1 MGLCKCPKRKVTNLFCFEHRVNVCEHCLVA-NHAKCIVQSYLQWLQDSDYN--PNCRLCN 57 Query: 253 LVLEAASEETTRLGCLHVMHTKCLISHVQSFPAQTAPAGF 372 + L AS ETTRL C + H CL P TAPAG+ Sbjct: 58 IPL--ASRETTRLVCYDLFHWACLNERAAQLPRNTAPAGY 95
>ZFPL1_MOUSE (Q9DB43) Zinc finger protein-like 1| Length = 310 Score = 86.3 bits (212), Expect = 8e-17 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 2/100 (2%) Frame = +1 Query: 79 MVVCKC--RKATRVYCFVHQVPVCGECICSPEHQLCVVKNYAEWVVNSDYDWPQHCSLCN 252 M +CKC RK T ++CF H+V VC C+ + H C+V++Y +W+ +SDY+ +C LCN Sbjct: 1 MGLCKCPKRKVTNLFCFEHRVNVCEHCLVA-NHAKCIVQSYLQWLQDSDYN--PNCRLCN 57 Query: 253 LVLEAASEETTRLGCLHVMHTKCLISHVQSFPAQTAPAGF 372 L AS ETTRL C + H C+ P TAPAG+ Sbjct: 58 TPL--ASRETTRLVCYDLFHWACINERAAQLPRNTAPAGY 95
>ZFPL1_BRARE (P62447) Zinc finger protein-like 1| Length = 317 Score = 78.2 bits (191), Expect = 2e-14 Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 2/100 (2%) Frame = +1 Query: 79 MVVCKC--RKATRVYCFVHQVPVCGECICSPEHQLCVVKNYAEWVVNSDYDWPQHCSLCN 252 M +CKC +K T ++CF H+V VC C+ S H C+V++Y +W+ +SDY+ +CSLC Sbjct: 1 MGLCKCPKKKVTNLFCFKHRVNVCEHCLVS-NHNKCIVQSYLQWLQDSDYN--PNCSLCI 57 Query: 253 LVLEAASEETTRLGCLHVMHTKCLISHVQSFPAQTAPAGF 372 L+ S++T RL C + H CL P TAP G+ Sbjct: 58 QPLD--SQDTVRLVCYDLFHWSCLNELASHQPLNTAPDGY 95
>ITB8_RABIT (P26013) Integrin beta-8 precursor| Length = 768 Score = 31.6 bits (70), Expect = 2.4 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +1 Query: 88 CKCRKATRVYCFVHQVPVCGECICSPEHQLCVVKNYAEWVVNSDYDWP-QHCSLC 249 CK + V C V VCG+C+C H++ + K Y ++ D+ P H SLC Sbjct: 511 CKAHEDQPV-CSGRGVCVCGKCLC---HKMKLGKVYGKYCEKDDFSCPYHHGSLC 561
>TRAIP_MOUSE (Q8VIG6) TRAF-interacting protein| Length = 470 Score = 30.4 bits (67), Expect = 5.3 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = +1 Query: 238 CSLCNLVLEAASEETTRLGCLHVMHTKCLISHVQSFPAQTAP 363 C++C+ + S + + C H H +CLI ++ P++T P Sbjct: 7 CTICSDFFDH-SRDVAAIHCGHTFHLQCLIQWFETAPSRTCP 47
>TRAIP_HUMAN (Q9BWF2) TRAF-interacting protein| Length = 469 Score = 30.4 bits (67), Expect = 5.3 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = +1 Query: 238 CSLCNLVLEAASEETTRLGCLHVMHTKCLISHVQSFPAQTAP 363 C++C+ + S + + C H H +CLI ++ P++T P Sbjct: 7 CTICSDFFDH-SRDVAAIHCGHTFHLQCLIQWFETAPSRTCP 47
>TXDP3_PARLU (P83258) Delta-palutoxin IT3 (Delta-paluIT3)| Length = 36 Score = 30.4 bits (67), Expect = 5.3 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 441 C*TEGSSCPDWSGEECIWESFC 506 C EG C DWSG C E +C Sbjct: 3 CLNEGDWCADWSGPSCCGEMWC 24
>GLNE_RALSO (Q8XW19) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 955 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -1 Query: 165 WGADTLAADRNLVDEAINPRCLAAFADDHRRGIREKNRESVRGA 34 W AD L L+DE ++ L+A D +G RE+ RE +R A Sbjct: 580 WAADYLTRHPQLLDELLDTEALSAAPD--WQGFRERVRERLRAA 621
>ABF2_STRCX (P82594) Alpha-N-arabinofuranosidase 2 precursor (EC 3.2.1.55)| (Alpha-N-arabinofuranosidase II) (Arabinosidase II) (Alpha-N-AFase II) Length = 328 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Frame = -2 Query: 671 PAEYVSPW-ESTADDKVASFEELSVFAAVDSPEYDRRLRGSEANAGGVRASALGIVTK*F 495 PA Y +P AD + + + +PEYDR + GG+ +A ++ + Sbjct: 47 PAPYENPLVRQRADPHIHRHTDGRYYFTATAPEYDRIVLRRSRTLGGLSTAAESVIWRAH 106 Query: 494 PNTFFSRPVWA 462 P + +WA Sbjct: 107 PTGDMAAHIWA 117
>UBP4_MOUSE (P35123) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)| (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein) Length = 962 Score = 29.6 bits (65), Expect = 9.1 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +1 Query: 442 AKLKEVVAQTGLEKNVFGNHFVTMPKADARTPPAFASDPLKRLSYSGESTAANTLNSSKD 621 +KL + GL + G V P+ + T P + + S T ++ ++S Sbjct: 196 SKLDNTIQDAGLYQ---GQVLVIEPQNEDGTWPRQSLQSKSSTAPSRNFTTSSKPSASPY 252 Query: 622 ATLSSAVLSQGD-TYSAGMYSSGI 690 ++S+++++ GD T S+GM+SSG+ Sbjct: 253 CSVSASLIANGDSTNSSGMHSSGV 276
>CD22_MOUSE (P35329) B-cell receptor CD22 precursor (Leu-14) (B-lymphocyte cell| adhesion molecule) (BL-CAM) (Siglec-2) Length = 862 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Frame = +1 Query: 427 GSRLHAKLKEVVAQTGLEKNVFGNHFVTMPKADARTPPAFASDPLKRLSYSGESTAANTL 606 G ++ K K+ +Q GL++N G F K RTP LS +S Sbjct: 720 GMKIQKKWKQNRSQQGLQENSSGQSFFVRNKKARRTP----------LSEGPQSQGC--Y 767 Query: 607 NSSKDATLSSAVL--SQGDTYSAG 672 N + D T+S A+L + D ++AG Sbjct: 768 NPAMDDTVSYAILRFPESDMHNAG 791 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,990,529 Number of Sequences: 219361 Number of extensions: 2253678 Number of successful extensions: 5874 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5863 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
