| Clone Name | bags13m05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X62388.1|HV1433PH H.vulgare mRNA for 14-3-3 protein homologue (14-3-3a) Length = 1361 Score = 1094 bits (552), Expect = 0.0 Identities = 559/560 (99%), Gaps = 1/560 (0%) Strand = Plus / Plus Query: 2 gtgacaacttgaccctctggnacctccgataacgcagaggagggtggtgatgagatcaag 61 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 802 gtgacaacttgaccctctgg-acctccgataacgcagaggagggtggtgatgagatcaag 860 Query: 62 gaagctgcctcaaagcctgagggagaggggcactgattggccctcaagagtgtgcccaag 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 861 gaagctgcctcaaagcctgagggagaggggcactgattggccctcaagagtgtgcccaag 920 Query: 122 tttatttctgagtccatttacgcagctacctgtatcattcggatcataagatgtactagg 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 921 tttatttctgagtccatttacgcagctacctgtatcattcggatcataagatgtactagg 980 Query: 182 gtcggttgcactatgtgaatcataagatgtggtaggatggtgctatgcgaagcgtgtcga 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 981 gtcggttgcactatgtgaatcataagatgtggtaggatggtgctatgcgaagcgtgtcga 1040 Query: 242 gctgaagtacctagtggactacagtcatgaggacggtcatgtggacatcgtcgcttctta 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1041 gctgaagtacctagtggactacagtcatgaggacggtcatgtggacatcgtcgcttctta 1100 Query: 302 gttcattagcagatttcaaactatttcctgtattgcagcacattattagtattgctgtat 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1101 gttcattagcagatttcaaactatttcctgtattgcagcacattattagtattgctgtat 1160 Query: 362 tagcaattttcatggcttgttgatgattgatcatacttcgcgtaaggcgcccccaaagct 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1161 tagcaattttcatggcttgttgatgattgatcatacttcgcgtaaggcgcccccaaagct 1220 Query: 422 tgtgcctttcttatgaggcaacaactgagattttcttgtctactttccctctcaaaataa 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1221 tgtgcctttcttatgaggcaacaactgagattttcttgtctactttccctctcaaaataa 1280 Query: 482 ttgaagttctaggattcttcccttagcttaattatgaaatgtattttcttattattatat 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281 ttgaagttctaggattcttcccttagcttaattatgaaatgtattttcttattattatat 1340 Query: 542 cgatccacatgttcaacatc 561 |||||||||||||||||||| Sbjct: 1341 cgatccacatgttcaacatc 1360
>ref|XM_469508.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1362 Score = 58.0 bits (29), Expect = 3e-05 Identities = 39/41 (95%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 326 ttcctgtatt-gcagcacattattagtattgctgtattagc 365 |||||||||| |||||||||||||||||| ||||||||||| Sbjct: 1202 ttcctgtatttgcagcacattattagtatcgctgtattagc 1242 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/66 (87%), Gaps = 4/66 (6%) Strand = Plus / Plus Query: 119 aagtttatttctgagtccatttacgcagctac---ctgtatcattcggatcataagatgt 175 |||| ||||||||||||||||||| ||||||| |||||| | | |||||||||||||| Sbjct: 998 aagtctatttctgagtccatttactcagctacctgctgtattact-ggatcataagatgt 1056 Query: 176 actagg 181 |||||| Sbjct: 1057 actagg 1062 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 235 gtgtcgagctgaagtacctagtggac 260 |||||||||||||||||| ||||||| Sbjct: 1111 gtgtcgagctgaagtacccagtggac 1136 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 gaggagggtggtgatgagatcaaggaagc 66 ||||| |||||||| |||||||||||||| Sbjct: 932 gaggatggtggtgacgagatcaaggaagc 960
>gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence Length = 142712 Score = 58.0 bits (29), Expect = 3e-05 Identities = 39/41 (95%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 326 ttcctgtatt-gcagcacattattagtattgctgtattagc 365 |||||||||| |||||||||||||||||| ||||||||||| Sbjct: 40235 ttcctgtatttgcagcacattattagtatcgctgtattagc 40195 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/66 (87%), Gaps = 4/66 (6%) Strand = Plus / Minus Query: 119 aagtttatttctgagtccatttacgcagctac---ctgtatcattcggatcataagatgt 175 |||| ||||||||||||||||||| ||||||| |||||| | | |||||||||||||| Sbjct: 40439 aagtctatttctgagtccatttactcagctacctgctgtattact-ggatcataagatgt 40381 Query: 176 actagg 181 |||||| Sbjct: 40380 actagg 40375 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 235 gtgtcgagctgaagtacctagtggac 260 |||||||||||||||||| ||||||| Sbjct: 40326 gtgtcgagctgaagtacccagtggac 40301 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 38 gaggagggtggtgatgagatcaaggaagc 66 ||||| |||||||| |||||||||||||| Sbjct: 40505 gaggatggtggtgacgagatcaaggaagc 40477
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 39/41 (95%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 326 ttcctgtatt-gcagcacattattagtattgctgtattagc 365 |||||||||| |||||||||||||||||| ||||||||||| Sbjct: 28372807 ttcctgtatttgcagcacattattagtatcgctgtattagc 28372847 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/66 (87%), Gaps = 4/66 (6%) Strand = Plus / Plus Query: 119 aagtttatttctgagtccatttacgcagctac---ctgtatcattcggatcataagatgt 175 |||| ||||||||||||||||||| ||||||| |||||| | | |||||||||||||| Sbjct: 28372603 aagtctatttctgagtccatttactcagctacctgctgtattact-ggatcataagatgt 28372661 Query: 176 actagg 181 |||||| Sbjct: 28372662 actagg 28372667 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 415 caaagcttgtgcctttcttatgag 438 |||||||||||||||||||||||| Sbjct: 29468735 caaagcttgtgcctttcttatgag 29468758 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 235 gtgtcgagctgaagtacctagtggac 260 |||||||||||||||||| ||||||| Sbjct: 28372716 gtgtcgagctgaagtacccagtggac 28372741 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 gaggagggtggtgatgagatcaaggaagc 66 ||||| |||||||| |||||||||||||| Sbjct: 28372537 gaggatggtggtgacgagatcaaggaagc 28372565
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 39/41 (95%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 326 ttcctgtatt-gcagcacattattagtattgctgtattagc 365 |||||||||| |||||||||||||||||| ||||||||||| Sbjct: 28464131 ttcctgtatttgcagcacattattagtatcgctgtattagc 28464171 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/66 (87%), Gaps = 4/66 (6%) Strand = Plus / Plus Query: 119 aagtttatttctgagtccatttacgcagctac---ctgtatcattcggatcataagatgt 175 |||| ||||||||||||||||||| ||||||| |||||| | | |||||||||||||| Sbjct: 28463927 aagtctatttctgagtccatttactcagctacctgctgtattact-ggatcataagatgt 28463985 Query: 176 actagg 181 |||||| Sbjct: 28463986 actagg 28463991 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 415 caaagcttgtgcctttcttatgag 438 |||||||||||||||||||||||| Sbjct: 29560157 caaagcttgtgcctttcttatgag 29560180 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 235 gtgtcgagctgaagtacctagtggac 260 |||||||||||||||||| ||||||| Sbjct: 28464040 gtgtcgagctgaagtacccagtggac 28464065 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 gaggagggtggtgatgagatcaaggaagc 66 ||||| |||||||| |||||||||||||| Sbjct: 28463861 gaggatggtggtgacgagatcaaggaagc 28463889
>dbj|D16140.1|RICS94A Oryza sativa S94 mRNA for brain specific protein, complete cds Length = 1455 Score = 58.0 bits (29), Expect = 3e-05 Identities = 39/41 (95%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 326 ttcctgtatt-gcagcacattattagtattgctgtattagc 365 |||||||||| |||||||||||||||||| ||||||||||| Sbjct: 1239 ttcctgtatttgcagcacattattagtatcgctgtattagc 1279 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/66 (87%), Gaps = 4/66 (6%) Strand = Plus / Plus Query: 119 aagtttatttctgagtccatttacgcagctac---ctgtatcattcggatcataagatgt 175 |||| ||||||||||||||||||| ||||||| |||||| | | |||||||||||||| Sbjct: 1035 aagtctatttctgagtccatttactcagctacctgctgtattact-ggatcataagatgt 1093 Query: 176 actagg 181 |||||| Sbjct: 1094 actagg 1099 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 235 gtgtcgagctgaagtacctagtggac 260 |||||||||||||||||| ||||||| Sbjct: 1148 gtgtcgagctgaagtacccagtggac 1173 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 gaggagggtggtgatgagatcaaggaagc 66 ||||| |||||||| |||||||||||||| Sbjct: 969 gaggatggtggtgacgagatcaaggaagc 997
>dbj|AK103065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117N24, full insert sequence Length = 1382 Score = 58.0 bits (29), Expect = 3e-05 Identities = 39/41 (95%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 326 ttcctgtatt-gcagcacattattagtattgctgtattagc 365 |||||||||| |||||||||||||||||| ||||||||||| Sbjct: 1204 ttcctgtatttgcagcacattattagtatcgctgtattagc 1244 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/66 (87%), Gaps = 4/66 (6%) Strand = Plus / Plus Query: 119 aagtttatttctgagtccatttacgcagctac---ctgtatcattcggatcataagatgt 175 |||| ||||||||||||||||||| ||||||| |||||| | | |||||||||||||| Sbjct: 1000 aagtctatttctgagtccatttactcagctacctgctgtattact-ggatcataagatgt 1058 Query: 176 actagg 181 |||||| Sbjct: 1059 actagg 1064 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 235 gtgtcgagctgaagtacctagtggac 260 |||||||||||||||||| ||||||| Sbjct: 1113 gtgtcgagctgaagtacccagtggac 1138 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 gaggagggtggtgatgagatcaaggaagc 66 ||||| |||||||| |||||||||||||| Sbjct: 934 gaggatggtggtgacgagatcaaggaagc 962
>dbj|AK062077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F06, full insert sequence Length = 1174 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/66 (87%), Gaps = 4/66 (6%) Strand = Plus / Plus Query: 119 aagtttatttctgagtccatttacgcagctac---ctgtatcattcggatcataagatgt 175 |||| ||||||||||||||||||| ||||||| |||||| | | |||||||||||||| Sbjct: 1003 aagtctatttctgagtccatttactcagctacctgctgtattact-ggatcataagatgt 1061 Query: 176 actagg 181 |||||| Sbjct: 1062 actagg 1067 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 235 gtgtcgagctgaagtacctagtggac 260 |||||||||||||||||| ||||||| Sbjct: 1116 gtgtcgagctgaagtacccagtggac 1141 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 38 gaggagggtggtgatgagatcaaggaagc 66 ||||| |||||||| |||||||||||||| Sbjct: 937 gaggatggtggtgacgagatcaaggaagc 965
>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005H20, complete sequence Length = 135560 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 415 caaagcttgtgcctttcttatgag 438 |||||||||||||||||||||||| Sbjct: 18566 caaagcttgtgcctttcttatgag 18543
>dbj|AK154390.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630026G22 product:Warning: possibly chimeric clone, full insert sequence Length = 5435 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 488 ttctaggattcttcccttagctt 510 ||||||||||||||||||||||| Sbjct: 994 ttctaggattcttcccttagctt 972
>emb|AL611924.14| Mouse DNA sequence from clone RP23-106K5 on chromosome 4, complete sequence Length = 164958 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 488 ttctaggattcttcccttagctt 510 ||||||||||||||||||||||| Sbjct: 18112 ttctaggattcttcccttagctt 18090
>gb|AC101748.7| Mus musculus chromosome 5, clone RP24-133H21, complete sequence Length = 168366 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 518 aaatgtattttcttattattat 539 |||||||||||||||||||||| Sbjct: 109069 aaatgtattttcttattattat 109048
>gb|AC099538.2| Homo sapiens chromosome 3 clone RP11-90I9, complete sequence Length = 170033 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 460 tctactttccctctcaaaataa 481 |||||||||||||||||||||| Sbjct: 150505 tctactttccctctcaaaataa 150526
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 aggacggtcatgtggacatcgt 292 |||||||||||||||||||||| Sbjct: 2576630 aggacggtcatgtggacatcgt 2576609
>emb|AL603786.3| Zebrafish DNA sequence from clone BUSM1-57F23, complete sequence Length = 94712 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 tgaaatgtattttcttattattatat 541 ||||||||||| |||||||||||||| Sbjct: 30752 tgaaatgtattatcttattattatat 30727
>emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in linkage group 10, complete sequence Length = 188280 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 516 tgaaatgtattttcttattattatat 541 ||||||||||| |||||||||||||| Sbjct: 74993 tgaaatgtattatcttattattatat 75018
>gb|AC092224.2| Drosophila melanogaster clone BACR17M04, complete sequence Length = 145213 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 519 aatgtattttcttattattat 539 ||||||||||||||||||||| Sbjct: 84645 aatgtattttcttattattat 84665
>gb|BT013570.1| Lycopersicon esculentum clone 132308R, mRNA sequence Length = 5039 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 450 gattttcttgtctactttccc 470 ||||||||||||||||||||| Sbjct: 4502 gattttcttgtctactttccc 4482 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 attttcttgtctactttccc 470 |||||||||||||||||||| Sbjct: 4420 attttcttgtctactttccc 4401
>emb|AL365364.19| Human DNA sequence from clone RP11-624L12 on chromosome 10 Contains a ribosomal protein L17 (RPL17) pseudogene and the 3'end of the FER1L3 gene for fer-1-like 3, myoferlin (C. elegans), complete sequence Length = 173864 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 gcagaggagggtggtgatgag 55 ||||||||||||||||||||| Sbjct: 38936 gcagaggagggtggtgatgag 38956
>emb|AL670472.7| Mouse DNA sequence from clone RP23-26M1 on chromosome 11 Contains a ribosomal protein S6 (Rps6) pseudogene, the gene for ileal fatty acid binding protein 6 (gastrotropin) (Fabp6), two novel genes, the gene for a novel protein (1810033K05Rik), a mitochondrial ribosomal protein 63 (Mrp63) pseudogene, the gene for step II splicing factor SLU7 (Slu7-pending), the Pttg1 gene for pituitary tumor-transforming 1 and a CpG island, complete sequence Length = 232609 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 attttcttgtctactttccct 471 ||||||||||||||||||||| Sbjct: 220835 attttcttgtctactttccct 220815
>dbj|AB182944.1| Triticum aestivum Wknox1b gene for KN1 homeobox protein, complete cds Length = 10847 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 caaaataattgaagttctagg 494 ||||||||||||||||||||| Sbjct: 8565 caaaataattgaagttctagg 8585
>gb|AC154574.2| Mus musculus BAC clone RP23-399K3 from chromosome 14, complete sequence Length = 180263 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 ttagttcattagcagatttca 319 ||||||||||||||||||||| Sbjct: 113641 ttagttcattagcagatttca 113661
>gb|AY913234.1| Uncultured forest soil bacterium clone DUNssu013 16S ribosomal RNA gene, partial sequence Length = 1441 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 29 gataacgcagaggagggtggtgatgagatcaag 61 ||||||| |||||||||||| |||||| ||||| Sbjct: 1114 gataacggagaggagggtggggatgaggtcaag 1146
>gb|AY913233.1| Uncultured forest soil bacterium clone DUNssu012 16S ribosomal RNA gene, partial sequence Length = 1441 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 29 gataacgcagaggagggtggtgatgagatcaag 61 ||||||| |||||||||||| |||||| ||||| Sbjct: 1114 gataacggagaggagggtggggatgaggtcaag 1146
>gb|AE003644.4| Drosophila melanogaster chromosome 2L, section 53 of 83 of the complete sequence Length = 263306 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 519 aatgtattttcttattattat 539 ||||||||||||||||||||| Sbjct: 197999 aatgtattttcttattattat 197979
>gb|U80070.1|MCU80070 Mesembryanthemum crystallinum 14-3-3-like protein (GBF) mRNA, complete cds Length = 1242 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 29 gataacgcagaggagggtggtgatgagatcaaggaagctgc 69 ||||| || |||||||| || |||||||||||||| ||||| Sbjct: 769 gataatgcggaggagggaggcgatgagatcaaggaggctgc 809
>emb|AL772394.7| Mouse DNA sequence from clone RP23-67C1 on chromosome 4, complete sequence Length = 89437 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 atgtattttcttattattata 540 ||||||||||||||||||||| Sbjct: 45374 atgtattttcttattattata 45354
>emb|AL163195.5|CNS01RIH Human chromosome 14 DNA sequence BAC R-14J7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162209 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 513 ttatgaaatgtattttcttat 533 ||||||||||||||||||||| Sbjct: 114286 ttatgaaatgtattttcttat 114266
>gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, complete sequence Length = 176450 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 cttgtctactttccctctca 475 |||||||||||||||||||| Sbjct: 55756 cttgtctactttccctctca 55775
>gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complete sequence Length = 159541 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 gcagatttcaaactatttcc 329 |||||||||||||||||||| Sbjct: 381 gcagatttcaaactatttcc 362
>ref|XM_471692.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1650 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 cccccaaagcttgtgcctttctta 434 |||||||||||| ||||||||||| Sbjct: 397 cccccaaagcttttgcctttctta 374
>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence Length = 78195 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 474 caaaataattgaagttctaggatt 497 |||||||||||||||| ||||||| Sbjct: 36533 caaaataattgaagttttaggatt 36510
>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence Length = 101101 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 474 caaaataattgaagttctaggatt 497 |||||||||| ||||||||||||| Sbjct: 16810 caaaataatttaagttctaggatt 16833
>emb|BX537295.7| Zebrafish DNA sequence from clone DKEY-21O10 in linkage group 1, complete sequence Length = 165366 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 atgtattttcttattattat 539 |||||||||||||||||||| Sbjct: 35845 atgtattttcttattattat 35826
>gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosome 14, complete sequence Length = 163978 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 aaatgtattttcttattatt 537 |||||||||||||||||||| Sbjct: 160386 aaatgtattttcttattatt 160367
>gb|AC126611.3| Mus musculus BAC clone RP23-316N22 from chromosome 14, complete sequence Length = 177469 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 aaatgtattttcttattatt 537 |||||||||||||||||||| Sbjct: 165082 aaatgtattttcttattatt 165101
>gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, complete sequence Length = 210514 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 508 cttaattatgaaatgtattttctt 531 ||||| |||||||||||||||||| Sbjct: 61003 cttaactatgaaatgtattttctt 60980
>emb|AL731621.3|OSJN00268 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence Length = 118791 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 cccccaaagcttgtgcctttctta 434 |||||||||||| ||||||||||| Sbjct: 110138 cccccaaagcttttgcctttctta 110115
>gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosome 10, complete sequence Length = 170988 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 508 cttaattatgaaatgtattttctt 531 ||||| |||||||||||||||||| Sbjct: 115447 cttaactatgaaatgtattttctt 115424
>emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in linkage group 6, complete sequence Length = 171498 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 464 ctttccctctcaaaataattgaag 487 ||||| |||||||||||||||||| Sbjct: 87901 ctttctctctcaaaataattgaag 87878
>gb|AC107025.3| Homo sapiens 3 BAC RP11-474M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178033 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 ttaattatgaaatgtatttt 528 |||||||||||||||||||| Sbjct: 33005 ttaattatgaaatgtatttt 32986
>gb|BC042487.1| Homo sapiens cDNA clone IMAGE:4821609 Length = 2772 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 ttaattatgaaatgtatttt 528 |||||||||||||||||||| Sbjct: 1924 ttaattatgaaatgtatttt 1905
>gb|AC119428.2| Homo sapiens chromosome 1 clone RP11-117D22, complete sequence Length = 67437 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gaggcaacaactgagatttt 455 |||||||||||||||||||| Sbjct: 41749 gaggcaacaactgagatttt 41730
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete sequence Length = 131743 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 atgaaatgtattttcttatt 534 |||||||||||||||||||| Sbjct: 52617 atgaaatgtattttcttatt 52636
>gb|AC158994.4| Mus musculus BAC clone RP24-79P8 from chromosome 5, complete sequence Length = 201330 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 tgaagttctaggattcttcc 502 |||||||||||||||||||| Sbjct: 108720 tgaagttctaggattcttcc 108739
>gb|AC024569.5| Homo sapiens chromosome 5 clone CTD-2188H20, complete sequence Length = 193547 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tgaaatgtattttcttattattat 539 ||||||||||||| |||||||||| Sbjct: 70406 tgaaatgtatttttttattattat 70429
>gb|AC152416.2| Mus musculus BAC clone RP23-352L15 from chromosome 5, complete sequence Length = 204014 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 tgaagttctaggattcttcc 502 |||||||||||||||||||| Sbjct: 23533 tgaagttctaggattcttcc 23552
>gb|AC020977.6| Homo sapiens chromosome 5 clone RP11-92M7, complete sequence Length = 156105 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 tgaaatgtattttcttattattat 539 ||||||||||||| |||||||||| Sbjct: 52902 tgaaatgtatttttttattattat 52925
>gb|AY789247.1| Malus x domestica major allergen Mal d 1.0502 (Mal d 1.05) gene, Mal d 1.0502 allele, complete cds Length = 928 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 agggtggtgatgagatcaaggaag 65 ||||||||| |||||||||||||| Sbjct: 490 agggtggtgttgagatcaaggaag 513
>gb|AY789246.1| Malus x domestica major allergen Mal d 1.0501 (Mal d 1.05) gene, Mal d 1.0501 allele, complete cds Length = 928 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 agggtggtgatgagatcaaggaag 65 ||||||||| |||||||||||||| Sbjct: 490 agggtggtgttgagatcaaggaag 513
>gb|AY789245.1| Malus x domestica major allergen Mal d 1.0501 (Mal d 1.05) gene, Mal d 1.0501 allele, complete cds Length = 928 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 agggtggtgatgagatcaaggaag 65 ||||||||| |||||||||||||| Sbjct: 490 agggtggtgttgagatcaaggaag 513
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 cccccaaagcttgtgcctttctta 434 |||||||||||| ||||||||||| Sbjct: 13473367 cccccaaagcttttgcctttctta 13473344
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 415 caaagcttgtgcctttcttatgag 438 ||||| |||||||||||||||||| Sbjct: 9050131 caaagtttgtgcctttcttatgag 9050154
>gb|AC105443.3| Homo sapiens chromosome 7 clone RP11-533N5, complete sequence Length = 185272 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gattttcttgtctactttcc 469 |||||||||||||||||||| Sbjct: 88583 gattttcttgtctactttcc 88564
>gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromosome 7, complete sequence Length = 222089 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gattttcttgtctactttcc 469 |||||||||||||||||||| Sbjct: 169834 gattttcttgtctactttcc 169815
>gb|AC092620.2| Homo sapiens BAC clone RP11-231E19 from 2, complete sequence Length = 151037 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 ttaattatgaaatgtatttt 528 |||||||||||||||||||| Sbjct: 92023 ttaattatgaaatgtatttt 92004
>gb|AC073977.6| Homo sapiens BAC clone RP11-253H16 from 2, complete sequence Length = 165020 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 tgaagttctaggattcttcc 502 |||||||||||||||||||| Sbjct: 93364 tgaagttctaggattcttcc 93383
>gb|AC124905.3| Equus caballus clone CH241-184O19, complete sequence Length = 171209 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 attgctgtattagcaatttt 371 |||||||||||||||||||| Sbjct: 28812 attgctgtattagcaatttt 28793
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 415 caaagcttgtgcctttcttatgag 438 ||||| |||||||||||||||||| Sbjct: 79138 caaagtttgtgcctttcttatgag 79161
>emb|BX323798.6| Zebrafish DNA sequence from clone CH211-225G5, complete sequence Length = 81343 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ttaattatgaaatgtatttt 528 |||||||||||||||||||| Sbjct: 27612 ttaattatgaaatgtatttt 27631
>emb|AL772311.19| Mouse DNA sequence from clone RP23-87P16 on chromosome 4, complete sequence Length = 234393 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 cttgtctactttccctctca 475 |||||||||||||||||||| Sbjct: 79080 cttgtctactttccctctca 79099
>dbj|AK120531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127H23, full insert sequence Length = 6225 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 415 caaagcttgtgcctttcttatgag 438 ||||| |||||||||||||||||| Sbjct: 1252 caaagtttgtgcctttcttatgag 1229
>dbj|D85880.1|SEQPYGHL1 Seriola quinqueradiata GHL1 mRNA for yghl1, complete cds Length = 1521 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtgacaacttgaccctctgg 21 |||||||||||||||||||| Sbjct: 590 gtgacaacttgaccctctgg 571
>dbj|AB094665.1| Seriola quinqueradiata YGHL1 gene for putative growth hormone like protein-1, complete cds Length = 6658 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtgacaacttgaccctctgg 21 |||||||||||||||||||| Sbjct: 3558 gtgacaacttgaccctctgg 3539
>emb|AL954149.19| Zebrafish DNA sequence from clone CH211-146G19 in linkage group 2, complete sequence Length = 163971 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 513 ttatgaaatgtattttcttattattata 540 |||| |||||||||||||| |||||||| Sbjct: 103621 ttattaaatgtattttctttttattata 103594
>dbj|AB083198.1| Seriola quinqueradiata YGHL1 gene for hypoxia inducible gene homolog, complete cds Length = 2932 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtgacaacttgaccctctgg 21 |||||||||||||||||||| Sbjct: 2001 gtgacaacttgaccctctgg 1982
>dbj|AB083197.1| Seriola quinqueradiata YGHL1 mRNA for hypoxia inducible gene homolog, complete cds Length = 1533 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtgacaacttgaccctctgg 21 |||||||||||||||||||| Sbjct: 602 gtgacaacttgaccctctgg 583
>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence Length = 133238 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 cccccaaagcttgtgcctttctta 434 |||||||||||| ||||||||||| Sbjct: 1161 cccccaaagcttttgcctttctta 1138
>gb|CP000218.1| Drosophila melanogaster genomic scaffold 211000022280780 Length = 166742 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 tattttcttattattatatc 542 |||||||||||||||||||| Sbjct: 130798 tattttcttattattatatc 130817
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 attgctgtattagcaatttt 371 |||||||||||||||||||| Sbjct: 1661456 attgctgtattagcaatttt 1661437
>dbj|AB067686.1| Seriola quinqueradiata mRNA for yghl1, complete cds Length = 1511 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtgacaacttgaccctctgg 21 |||||||||||||||||||| Sbjct: 585 gtgacaacttgaccctctgg 566
>dbj|AP000079.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 15/19, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 tgtattttcttattattata 540 |||||||||||||||||||| Sbjct: 39827 tgtattttcttattattata 39808
>dbj|AB073641.1| Seriola quinqueradiata mRNA for yghl1, complete cds Length = 1529 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtgacaacttgaccctctgg 21 |||||||||||||||||||| Sbjct: 603 gtgacaacttgaccctctgg 584
>dbj|AB073640.1| Seriola quinqueradiata gene for yghl1, complete cds Length = 2418 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtgacaacttgaccctctgg 21 |||||||||||||||||||| Sbjct: 1492 gtgacaacttgaccctctgg 1473 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,565,036 Number of Sequences: 3902068 Number of extensions: 5565036 Number of successful extensions: 117321 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116993 Number of HSP's gapped (non-prelim): 327 length of query: 571 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 548 effective length of database: 17,143,297,704 effective search space: 9394527141792 effective search space used: 9394527141792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)