ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13m02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PP11_HUMAN (P21128) Placental protein 11 precursor (EC 3.4.21.-)... 74 2e-13
2MAD1_CANGA (Q6FS63) Spindle assembly checkpoint component MAD1 (... 33 0.49
3GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta subu... 32 1.1
4GBLP_SOYBN (Q39836) Guanine nucleotide-binding protein beta subu... 32 1.4
5GBLP_TOBAC (P49026) Guanine nucleotide-binding protein beta subu... 32 1.8
6GBLP_ORYSA (P49027) Guanine nucleotide-binding protein beta subu... 32 1.8
7GBLP_NICPL (P93340) Guanine nucleotide-binding protein beta subu... 30 4.1
8GBLP_CHLRE (P25387) Guanine nucleotide-binding protein beta subu... 30 7.0
9RK3_PORPU (P51314) Chloroplast 50S ribosomal protein L3 29 9.2

>PP11_HUMAN (P21128) Placental protein 11 precursor (EC 3.4.21.-) (PP11)|
          Length = 369

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
 Frame = +1

Query: 148 TREELNSLTEACSRLWELDMNRLVPGKDYRIE---CGEGKKVYQKDDMASENLFSWLGED 318
           T+EE+ S++E   +++  D N+    +D  +    C    +   + D   + LF+++ E 
Sbjct: 96  TKEEIQSISE---KIYRADTNK-AQKEDIVLNSQNCISPSETRNQVDRCPKPLFTYVNEK 151

Query: 319 VLTKPTYSRFCALLDNYNPHQGYKEVVTQQDKHEEAAFIEEIARTAPIKYLHRYLVLKGV 498
           + +KPTY+ F  LL+NY    G+ E  + Q+  E+ AF+ EI +TA +K L+ +L  +  
Sbjct: 152 LFSKPTYAAFINLLNNYQRATGHGEHFSAQELAEQDAFLREIMKTAVMKELYSFLHHQNR 211

Query: 499 ASQDYDDFKAMLTSLWFTLYGRCGNSSCSSAFEHV 603
              +  +F   L ++WF LY R      SS FEHV
Sbjct: 212 YGSE-QEFVDDLKNMWFGLYSRGNEEGDSSGFEHV 245



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>MAD1_CANGA (Q6FS63) Spindle assembly checkpoint component MAD1 (Mitotic arrest|
           deficient protein 1)
          Length = 657

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
 Frame = +1

Query: 58  EAWNGYKRPPSEQEYSEDVGQIHHGLNVEPTREELNSLTEACSRLWELDMNRLVPGKDYR 237
           E WN +     +Q+ S D    H  +  E  R ELN +TE  + + +   N  +   +  
Sbjct: 266 EEWNKFLSNKKQQDNSNDYSIDHFIIEFESQRRELNMVTEELAEVKKSYYNSKILNDELA 325

Query: 238 IECGEGKKVYQKDDMASE--NLFSWLGEDVLTKPTYSRFCALLDNYNPHQGYKEVVTQQ 408
           +E  +  K+  KDD  +   NL     E    K      C+LL N  P    KE + QQ
Sbjct: 326 LERNQLLKL--KDDYENNIINLEKLNHELEQQKVLLEEECSLLKNQIP---TKENLNQQ 379



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>GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta subunit-like|
           protein
          Length = 325

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 100 YSEDVGQIHHGLNVEPTREELNSLTEACSRLWELDMNRLV 219
           YS D G I H L   P R  L + TE+  ++W+L+   +V
Sbjct: 229 YSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSIV 268



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>GBLP_SOYBN (Q39836) Guanine nucleotide-binding protein beta subunit-like|
           protein
          Length = 325

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 100 YSEDVGQIHHGLNVEPTREELNSLTEACSRLWELDMNRLV 219
           YS D G I H L   P+R  L + TE   ++W+L+   +V
Sbjct: 229 YSLDAGSIIHALCFSPSRYWLCAATEQSIKIWDLESKSIV 268



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>GBLP_TOBAC (P49026) Guanine nucleotide-binding protein beta subunit-like|
           protein
          Length = 326

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = +1

Query: 100 YSEDVGQIHHGLNVEPTREELNSLTEACSRLWELDMNRLVPGKDYRIECGEGKKVYQKDD 279
           YS + G I H L   P R  L + TE+  ++W+L+   +V   D +++      + Q+ +
Sbjct: 230 YSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKSIV--DDLKVD------LKQESE 281

Query: 280 MASENLFS 303
           M+SE   S
Sbjct: 282 MSSEGTAS 289



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>GBLP_ORYSA (P49027) Guanine nucleotide-binding protein beta subunit-like|
           protein (GPB-LR) (RWD)
          Length = 334

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 100 YSEDVGQIHHGLNVEPTREELNSLTEACSRLWELDMNRLVPGKDYRIECGEGKKVY 267
           YS D G I H L   P R  L + T+   ++W+L+   +V      I   + + +Y
Sbjct: 245 YSLDAGSIIHSLCFSPNRYWLCAATQDSIKIWDLESKHIVQDLKPEIPVSKNQMLY 300



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>GBLP_NICPL (P93340) Guanine nucleotide-binding protein beta subunit-like|
           protein
          Length = 326

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +1

Query: 100 YSEDVGQIHHGLNVEPTREELNSLTEACSRLWELDMNRLVPGKDYRIECGEGKKVYQKDD 279
           YS + G I H L   P R  L + TE+  ++W+L+   +V   D +++      + Q+ +
Sbjct: 230 YSLESGSIIHSLCFSPNRYWLCAATESSIKIWDLESKTIV--DDLKVD------LKQESE 281

Query: 280 MASENLFS 303
           M++E   S
Sbjct: 282 MSAEGTAS 289



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>GBLP_CHLRE (P25387) Guanine nucleotide-binding protein beta subunit-like|
           protein
          Length = 318

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 100 YSEDVGQIHHGLNVEPTREELNSLTEACSRLWELDMNRLV 219
           YS D G + H L   P R  L + T++  ++W+L+   +V
Sbjct: 230 YSLDAGDVIHCLCFSPNRYWLCAATQSSIKIWDLESKSIV 269



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>RK3_PORPU (P51314) Chloroplast 50S ribosomal protein L3|
          Length = 205

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 361 DNYNPHQ-GYKEVVTQQDKHEEAAFIEEIARTAPIKYLHRYLV 486
           D YN  Q GYK+VV Q+        +++ +++ P+KYL  YLV
Sbjct: 44  DGYNAIQVGYKQVVEQKLSKPLLGHLKK-SQSPPLKYLREYLV 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,807,000
Number of Sequences: 219361
Number of extensions: 1759701
Number of successful extensions: 4744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4743
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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