ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13l18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARF5_ARATH (Q9ZPX1) Probable ADP-ribosylation factor At2g18390 34 0.14
2ARF1_PLAFA (Q94650) ADP-ribosylation factor 1 28 9.7

>ARF5_ARATH (Q9ZPX1) Probable ADP-ribosylation factor At2g18390|
          Length = 185

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 17/24 (70%), Positives = 18/24 (75%)
 Frame = +1

Query: 1   RLDDRRAELHKLXKEERLAGSXLL 72
           RLDD + EL  L KEERLAGS LL
Sbjct: 98  RLDDCKMELDNLLKEERLAGSSLL 121



to top

>ARF1_PLAFA (Q94650) ADP-ribosylation factor 1|
          Length = 180

 Score = 27.7 bits (60), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   RLDDRRAELHKLXKEERLAGSXLL 72
           R+DD R ELH++  EE L  + +L
Sbjct: 98  RIDDAREELHRMINEEELKDAIIL 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,513,553
Number of Sequences: 219361
Number of extensions: 25171
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 80,573,946
effective HSP length: 0
effective length of database: 80,573,946
effective search space used: 1933774704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top