ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CNGC4_ARATH (Q94AS9) Cyclic nucleotide-gated ion channel 4 (AtCN... 30 5.4
2NU4M_DINSE (O79555) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 30 7.0

>CNGC4_ARATH (Q94AS9) Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic|
           nucleotide-and calmodulin-regulated ion channel 4)
           (AtHLM1)
          Length = 694

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 481 IPLKFAKRMRYYERGRWSCTRG 546
           +P+ F +R+R YER RW+  RG
Sbjct: 443 LPIGFRQRVRNYERQRWAAMRG 464



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>NU4M_DINSE (O79555) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 445

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 151 MYNLTSS*TFSTYILFIGNTRY*PIIFETLQETQKRFRFLLKTIS 17
           MY LT+S    T ILFI NT   P +F  + +T   +  L+  I+
Sbjct: 145 MYTLTTSMPLLTAILFINNTTNTPTLFMQMMQTTSPWTELMLWIA 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,403,805
Number of Sequences: 219361
Number of extensions: 1711859
Number of successful extensions: 3077
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3077
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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