>PHYE_ARATH (P42498) Phytochrome E|
          Length = 1112

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 34/145 (23%), Positives = 58/145 (40%)
 Frame = +1

Query: 28   QGIISKVSNDALGKNILKELQDDGVDTSYMAIADGGNSPFTYIIVDNQTKTRTCIHTPGY 207
            Q I + ++       +L+  +       ++  +D      T II     K+       G 
Sbjct: 880  QEIKNPLNGIRFAHKLLESSEISASQRQFLETSDACEKQITTIIESTDLKSIE----EGK 935

Query: 208  PPMKPEELTKENLFAALHGVDMVYFDVRLHETALLVAEEASQRKIPILVDAEKKREGLDD 387
              ++ EE   EN+   +    M+    R  +  + VAEE   + +P+  D  K +  L D
Sbjct: 936  LQLETEEFRLENILDTIISQVMIILRERNSQLRVEVAEEI--KTLPLNGDRVKLQLILAD 993

Query: 388  LLNFASYVVCSAKFPQAWTGASSTP 462
            LL     +V  A FP +W G S +P
Sbjct: 994  LLR---NIVNHAPFPNSWVGISISP 1015

>KDGK_BACSU (P50845) 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45)|
           (2-keto-3-deoxygluconokinase) (3-deoxy-2-oxo-D-gluconate
           kinase) (KDG kinase)
          Length = 324

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +1

Query: 31  GIISKVSNDALGKNILKELQDDGVDTS 111
           G +SKV ND LG  IL+EL+ +GVD S
Sbjct: 52  GWMSKVGNDQLGTFILQELKKEGVDVS 78

>RBSK_YEAST (P25332) Probable ribokinase (EC 2.7.1.15)|
          Length = 333

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 34  IISKVSNDALGKNILKELQDDGVDTSYMAIADGGNSPFTYIIVDNQ 171
           +I  V ND  GK +   L D GVD +++   +G N+    I+++ +
Sbjct: 61  MIGNVGNDTFGKQLKDTLSDCGVDITHVGTYEGINTGTATILIEEK 106

>CATR_ASPNG (P55303) Catalase R (EC 1.11.1.6)|
          Length = 730

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
 Frame = +1

Query: 1   AEPLAWASAQGIISKVSNDALGKNILKELQDDGVDTSY----------MAIADGGNSPFT 150
           + P +    Q + ++ S   +  NI+ E   DGV+T+Y          + IADG  S F 
Sbjct: 581 SHPESIKQGQAMAAQFSAAGVDLNIVTEAYADGVNTTYALSDAIDFDALIIADGVQSLFA 640

Query: 151 YIIVDNQ---TKTRTCIHTPGYPPMKPEEL 231
              + NQ   T T T      YPP +P ++
Sbjct: 641 SPALANQMNSTATSTL-----YPPARPFQI 665

>ARGJ_PSEF5 (Q4K7C2) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 405

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 121 IADGGNSPFTYIIVDNQTKTRTCIHTPGYPPMKPEELTKEN--LFAAL 258
           + DG N  F  I +D  T T  C         K  E+TK    LFAAL
Sbjct: 209 LLDGANKSFNRITIDGDTSTNDCCMLIATGQAKLPEITKAEGPLFAAL 256

>Y1459_PYRHO (O59128) Hypothetical sugar kinase PH1459|
          Length = 310

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 34  IISKVSNDALGKNILKELQDDGVDT 108
           +ISKV ND  G+ +++EL  + VDT
Sbjct: 56  LISKVGNDPFGEYLIEELSKENVDT 80

>Y041_RICCN (Q92JM6) Hypothetical protein RC0041|
          Length = 89

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 265 VDMVYFDVRLHETALLVAEEASQ-RKIPILVDAEKKREGLDDLLNFASYVVCSAKFPQ 435
           +D+V +  +L + A  +       +K+  L++  K    L++LLN+  Y+  ++ FP+
Sbjct: 11  IDIVNYYKQLEDNAKTIGNFLETVKKLNQLLETPKSENKLENLLNYLKYIYLTSNFPK 68

>RECR_THET8 (Q5SHY0) Recombination protein recR|
          Length = 194

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
 Frame = +1

Query: 88  QDDGVDTSYMAIADGGNSPFTYIIVDNQTKTRTCIHTPG--YPPMK---PEELTKENLFA 252
           QD+  D S +A+ +   S      ++   + R   H  G    P++   P+EL  E LF 
Sbjct: 71  QDEDRDRSLLAVVE---SVADLYALERSGEFRGLYHVLGGALNPLEGIGPKELNLEGLFR 127

Query: 253 ALHGVDMVY----FDVRLHETALLVAEEASQRKIPI 348
            L GV+ V       V    TAL +AEE  +R + +
Sbjct: 128 RLEGVEEVVLATSMTVEGEATALYLAEELKKRGVRV 163

>RECR_THET2 (Q72I96) Recombination protein recR|
          Length = 194

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
 Frame = +1

Query: 88  QDDGVDTSYMAIADGGNSPFTYIIVDNQTKTRTCIHTPG--YPPMK---PEELTKENLFA 252
           QD+  D S +A+ +   S      ++   + R   H  G    P++   P+EL  E LF 
Sbjct: 71  QDEDRDRSLLAVVE---SVADLYALERSGEFRGLYHVLGGALNPLEGIGPKELNLEGLFR 127

Query: 253 ALHGVDMVY----FDVRLHETALLVAEEASQRKIPI 348
            L GV+ V       V    TAL +AEE  +R + +
Sbjct: 128 RLEGVEEVVLATSMTVEGEATALYLAEELKKRGVRV 163

>ISY1_USTMA (Q4PEZ0) Pre-mRNA-splicing factor ISY1|
          Length = 351

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 481 ACVPMQLVSMRLLSRPEETLQSIQHMMQNSEGHPIPPS 368
           A  P +  S R    P++ LQ+     +N +GHPIPP+
Sbjct: 259 AATPAESTSKRA---PQDELQTPAKRHKNEQGHPIPPT 293

>CINA_OCEIH (Q8EQR8) CinA-like protein|
          Length = 417

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 21/77 (27%)
 Frame = +1

Query: 25  AQGIISKVSNDALGKNILKELQDD-----------------GVDTSYMAIADGG----NS 141
           +QG++S+  +DA+  N+ +++Q +                  V T Y++IADG     + 
Sbjct: 327 SQGVVSRACSDAMASNVTRKIQTNLGISFTGIAGPDEQEGKPVGTVYISIADGDEVVVSK 386

Query: 142 PFTYIIVDNQTKTRTCI 192
            F +    N  + R C+
Sbjct: 387 QFNFTGNRNHIRDRACL 403

>HCY2A_RAPTH (P80960) Hemocyanin type 2 unit a (RtH2-a) (Hemocyanin Rta)|
           (Hemocyanin RHSS2 subunit) (Hemocyanin heavy structural
           subunit)
          Length = 407

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +1

Query: 67  KNILKELQDDGVDTSYMAIADGGNSPFTYIIVDNQTKTRTCIHTPGYPPMKPEELTKENL 246
           +++++ELQ+D  +  + +IA    SP      +   K   C+H     P      TK+ +
Sbjct: 19  QSVMRELQNDSSEHGFQSIASFHGSPPLCPSPEANKKVACCVHGMASFPQWHRIFTKQ-M 77

Query: 247 FAALHG----VDMVYFD 285
            AAL G    V M Y+D
Sbjct: 78  EAALMGHGAKVGMPYWD 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,195,807
Number of Sequences: 219361
Number of extensions: 1731223
Number of successful extensions: 4669
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4668
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)