ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483845.1| Oryza sativa (japonica cultivar-group), mRNA 319 5e-84
2dbj|AK067804.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
3dbj|AK104887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
5dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
6gb|AC151957.1| Solanum tuberosum chromosome 5 clone PGEC13 map M... 46 0.12
7gb|AC165424.2| Mus musculus BAC clone RP24-68L23 from chromosome... 42 1.8
8emb|CR626910.5| Zebrafish DNA sequence from clone DKEY-204E20 in... 42 1.8
9gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, compl... 42 1.8
10gb|AC166102.2| Mus musculus BAC clone RP23-397O23 from chromosom... 40 7.2
11gb|AC154566.2| Mus musculus BAC clone RP23-407A17 from chromosom... 40 7.2
12gb|AY647956.1| Arabidopsis lyrata subsp. petraea AT4G30950 gene,... 40 7.2
13gb|BC076022.1| Danio rerio zgc:92345, mRNA (cDNA clone MGC:92345... 40 7.2
14ref|XM_955529.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.2
15ref|XM_326885.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.2
16gb|AC117253.3| Mus musculus BAC clone RP24-405A12 from chromosom... 40 7.2
17ref|XM_537140.2| PREDICTED: Canis familiaris similar to hedgehog... 40 7.2
18gb|AC138452.10| Medicago truncatula clone mth2-17p11, complete s... 40 7.2
19gb|AC147430.9| Medicago truncatula clone mth2-71e6, complete seq... 40 7.2
20gb|BC068940.1| Xenopus laevis CDH1 protein, mRNA (cDNA clone MGC... 40 7.2
21gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Ho... 40 7.2
22emb|AL513023.12| Human DNA sequence from clone RP11-256A6 on chr... 40 7.2
23ref|XM_503310.1| Yarrowia lipolytica CLIB122, YALI0D26315g predi... 40 7.2
24emb|X78546.1|XLXBCADH X.laevis XB-cad mRNA for XB-cadherin 40 7.2
25emb|BX294017.1|NCB7O17 Neurospora crassa DNA linkage group V BAC... 40 7.2
26emb|AJ315750.1|YLI315750 Yarrowia lipolytica sin3 gene 40 7.2
27emb|BX511110.5| Zebrafish DNA sequence from clone CH211-235L10 i... 40 7.2
28gb|AC074325.7| Homo sapiens chromosome 10 clone RP11-542E6, comp... 40 7.2
29dbj|AK086879.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 7.2
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
31ref|NM_001002449.1| Danio rerio zgc:92345 (zgc:92345), mRNA 40 7.2
32gb|AC155075.10| Mus musculus chromosome 5, clone RP24-82B9, comp... 40 7.2
33gb|AC147512.15| Mus musculus chromosome 10, clone RP23-464F18, c... 40 7.2
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.2
35emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb... 40 7.2
36emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388... 40 7.2
37emb|AM084333.1| Mus musculus chromosome 12 Igh-C and proximal Ig... 40 7.2
38gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thali... 40 7.2
39emb|AJ972403.2| Mus musculus chromosome 12 BAC clone 4k8 40 7.2
40emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 7.2
41emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chrom... 40 7.2 
>ref|XM_483845.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1627

 Score =  319 bits (161), Expect = 5e-84
 Identities = 420/505 (83%), Gaps = 1/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  tgggcctcagcccaaggnattatatccaaggtgtccaatgatgcactaggaaaaaacatt 75
           |||||||  |||||||| || ||||||||||| ||||||||  ||| ||||| ||| |||
Sbjct: 331 tgggccttcgcccaagg-atcatatccaaggtatccaatgacccacaaggaagaaatatt 389

                                                                       
Query: 76  ctcaaggagctgcaagacgacggagtagacacttcctatatggcgatagcagatggagga 135
           ||||||||||||||||| || || || ||||| ||  ||||   | | ||||| |  || 
Sbjct: 390 ctcaaggagctgcaagatgatggggtcgacacctctcatatcctggttgcagaggagggg 449

                                                                       
Query: 136 aattcacccttcacctatataatcgtcgataaccagacgaaaactcgtacttgcatacac 195
           |||||||| |||||||||||||| || || ||||||||||||||||||||||| || |||
Sbjct: 450 aattcacctttcacctatataattgttgacaaccagacgaaaactcgtacttgtattcac 509

                                                                       
Query: 196 actcctggttatcccccaatgaagccggaggagctcacaaaggaaaacttgtttgctgct 255
           |||||||||||||| || |||   || || ||||||||| | |||||||||||||| |||
Sbjct: 510 actcctggttatcctcctatggtccctgaagagctcacacaagaaaacttgtttgccgct 569

                                                                       
Query: 256 ttacatggcgtagacatggtgtattttgatgttagactgcatgagactgctttgcttgtt 315
           ||| | || |  ||||| || ||||||||||| ||| ||||||| |||||||| || |||
Sbjct: 570 ttagacggtgctgacattgtatattttgatgtcagattgcatgaaactgctttactagtt 629

                                                                       
Query: 316 gcagaagaggcaagccaaagaaaaatccctattttggtcgacgccgagaaaaagagggag 375
           || ||||||||||||||||||||| | ||||||||| | || |||||    |||||||| 
Sbjct: 630 gctgaagaggcaagccaaagaaaacttcctattttgattgatgccgaacggaagagggat 689

                                                                       
Query: 376 ggattggatgaccttctgaattttgcatcatatgttgtatgctctgcaaagtttcctcag 435
           |||||||| || ||||| ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 690 ggattggacgagcttctcaatttcgcatcttatgttgtatgctctgcaaaatttcctcag 749

                                                                       
Query: 436 gcctggacaggagcctcatcgacaccagttgcattggtacacatgcttctgaggttacct 495
           || ||||||||||||||||| ||||| ||||| |||||   ||||||| | || || |||
Sbjct: 750 gcttggacaggagcctcatcaacaccggttgctttggtgtccatgcttttaagattgcct 809

                                    
Query: 496 aatctcaagttcgttattgtaaccc 520
           ||| |||||||  ||||||||||||
Sbjct: 810 aatatcaagtttattattgtaaccc 834
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>dbj|AK067804.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119N07, full
           insert sequence
          Length = 1627

 Score =  319 bits (161), Expect = 5e-84
 Identities = 420/505 (83%), Gaps = 1/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  tgggcctcagcccaaggnattatatccaaggtgtccaatgatgcactaggaaaaaacatt 75
           |||||||  |||||||| || ||||||||||| ||||||||  ||| ||||| ||| |||
Sbjct: 331 tgggccttcgcccaagg-atcatatccaaggtatccaatgacccacaaggaagaaatatt 389

                                                                       
Query: 76  ctcaaggagctgcaagacgacggagtagacacttcctatatggcgatagcagatggagga 135
           ||||||||||||||||| || || || ||||| ||  ||||   | | ||||| |  || 
Sbjct: 390 ctcaaggagctgcaagatgatggggtcgacacctctcatatcctggttgcagaggagggg 449

                                                                       
Query: 136 aattcacccttcacctatataatcgtcgataaccagacgaaaactcgtacttgcatacac 195
           |||||||| |||||||||||||| || || ||||||||||||||||||||||| || |||
Sbjct: 450 aattcacctttcacctatataattgttgacaaccagacgaaaactcgtacttgtattcac 509

                                                                       
Query: 196 actcctggttatcccccaatgaagccggaggagctcacaaaggaaaacttgtttgctgct 255
           |||||||||||||| || |||   || || ||||||||| | |||||||||||||| |||
Sbjct: 510 actcctggttatcctcctatggtccctgaagagctcacacaagaaaacttgtttgccgct 569

                                                                       
Query: 256 ttacatggcgtagacatggtgtattttgatgttagactgcatgagactgctttgcttgtt 315
           ||| | || |  ||||| || ||||||||||| ||| ||||||| |||||||| || |||
Sbjct: 570 ttagacggtgctgacattgtatattttgatgtcagattgcatgaaactgctttactagtt 629

                                                                       
Query: 316 gcagaagaggcaagccaaagaaaaatccctattttggtcgacgccgagaaaaagagggag 375
           || ||||||||||||||||||||| | ||||||||| | || |||||    |||||||| 
Sbjct: 630 gctgaagaggcaagccaaagaaaacttcctattttgattgatgccgaacggaagagggat 689

                                                                       
Query: 376 ggattggatgaccttctgaattttgcatcatatgttgtatgctctgcaaagtttcctcag 435
           |||||||| || ||||| ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 690 ggattggacgagcttctcaatttcgcatcttatgttgtatgctctgcaaaatttcctcag 749

                                                                       
Query: 436 gcctggacaggagcctcatcgacaccagttgcattggtacacatgcttctgaggttacct 495
           || ||||||||||||||||| ||||| ||||| |||||   ||||||| | || || |||
Sbjct: 750 gcttggacaggagcctcatcaacaccggttgctttggtgtccatgcttttaagattgcct 809

                                    
Query: 496 aatctcaagttcgttattgtaaccc 520
           ||| |||||||  ||||||||||||
Sbjct: 810 aatatcaagtttattattgtaaccc 834
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>dbj|AK104887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B05, full
           insert sequence
          Length = 901

 Score =  200 bits (101), Expect = 3e-48
 Identities = 215/253 (84%)
 Strand = Plus / Plus

                                                                       
Query: 268 gacatggtgtattttgatgttagactgcatgagactgctttgcttgttgcagaagaggca 327
           ||||| || ||||||||||| ||| ||||||| |||||||| || ||||| |||||||||
Sbjct: 7   gacattgtatattttgatgtcagattgcatgaaactgctttactagttgctgaagaggca 66

                                                                       
Query: 328 agccaaagaaaaatccctattttggtcgacgccgagaaaaagagggagggattggatgac 387
           |||||||||||| | ||||||||| | || |||||    |||||||| |||||||| || 
Sbjct: 67  agccaaagaaaacttcctattttgattgatgccgaacggaagagggatggattggacgag 126

                                                                       
Query: 388 cttctgaattttgcatcatatgttgtatgctctgcaaagtttcctcaggcctggacagga 447
           ||||| ||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 127 cttctcaatttcgcatcttatgttgtatgctctgcaaaatttcctcaggcttggacagga 186

                                                                       
Query: 448 gcctcatcgacaccagttgcattggtacacatgcttctgaggttacctaatctcaagttc 507
           |||||||| ||||| ||||| |||||   ||||||| | || || |||||| ||||||| 
Sbjct: 187 gcctcatcaacaccggttgctttggtgtccatgcttttaagattgcctaatatcaagttt 246

                        
Query: 508 gttattgtaaccc 520
            ||||||||||||
Sbjct: 247 attattgtaaccc 259
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 6e-19
 Identities = 127/152 (83%)
 Strand = Plus / Plus

                                                                            
Query: 174      gaaaactcgtacttgcatacacactcctggttatcccccaatgaagccggaggagctcac 233
                ||||||||||||||| || ||||||||||||||||| || |||   || || ||||||||
Sbjct: 28364559 gaaaactcgtacttgtattcacactcctggttatcctcctatggtccctgaagagctcac 28364618

                                                                            
Query: 234      aaaggaaaacttgtttgctgctttacatggcgtagacatggtgtattttgatgttagact 293
                | | |||||||||||||| |||||| | || |  ||||| || ||||||||||| ||| |
Sbjct: 28364619 acaagaaaacttgtttgccgctttagacggtgctgacattgtatattttgatgtcagatt 28364678

                                                
Query: 294      gcatgagactgctttgcttgttgcagaagagg 325
                |||||| |||||||| || ||||| |||||||
Sbjct: 28364679 gcatgaaactgctttactagttgctgaagagg 28364710



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                            
Query: 323      aggcaagccaaagaaaaatccctattttggtcgacgccgagaaaaagagggagggattgg 382
                ||||||||||||||||| | ||||||||| | || |||||    |||||||| |||||||
Sbjct: 28365149 aggcaagccaaagaaaacttcctattttgattgatgccgaacggaagagggatggattgg 28365208

                                                                      
Query: 383      atgaccttctgaattttgcatcatatgttgtatgctctgcaaagtttcctcagg 436
                | || ||||| ||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct: 28365209 acgagcttctcaatttcgcatcttatgttgtatgctctgcaaaatttcctcagg 28365262



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                            
Query: 433      caggcctggacaggagcctcatcgacaccagttgcattggtacacatgcttctgaggtta 492
                ||||| ||||||||||||||||| ||||| ||||| |||||   ||||||| | || || 
Sbjct: 28366107 caggcttggacaggagcctcatcaacaccggttgctttggtgtccatgcttttaagattg 28366166

                                            
Query: 493      cctaatctcaagttcgttattgtaaccc 520
                |||||| |||||||  ||||||||||||
Sbjct: 28366167 cctaatatcaagtttattattgtaaccc 28366194



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 44       aggtgtccaatgatgcactaggaaaaaacattctcaaggagctgcaaga 92
                |||| ||||||||  ||| ||||| ||| ||||||||||||||||||||
Sbjct: 28363861 aggtatccaatgacccacaaggaagaaatattctcaaggagctgcaaga 28363909



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 136      aattcacccttcacctatataatcgtcgataaccagacg 174
                |||||||| |||||||||||||| || || |||||||||
Sbjct: 28364033 aattcacctttcacctatataattgttgacaaccagacg 28364071
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>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0044E16
          Length = 153296

 Score =  103 bits (52), Expect = 6e-19
 Identities = 127/152 (83%)
 Strand = Plus / Plus

                                                                         
Query: 174   gaaaactcgtacttgcatacacactcctggttatcccccaatgaagccggaggagctcac 233
             ||||||||||||||| || ||||||||||||||||| || |||   || || ||||||||
Sbjct: 93365 gaaaactcgtacttgtattcacactcctggttatcctcctatggtccctgaagagctcac 93424

                                                                         
Query: 234   aaaggaaaacttgtttgctgctttacatggcgtagacatggtgtattttgatgttagact 293
             | | |||||||||||||| |||||| | || |  ||||| || ||||||||||| ||| |
Sbjct: 93425 acaagaaaacttgtttgccgctttagacggtgctgacattgtatattttgatgtcagatt 93484

                                             
Query: 294   gcatgagactgctttgcttgttgcagaagagg 325
             |||||| |||||||| || ||||| |||||||
Sbjct: 93485 gcatgaaactgctttactagttgctgaagagg 93516



 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                         
Query: 323   aggcaagccaaagaaaaatccctattttggtcgacgccgagaaaaagagggagggattgg 382
             ||||||||||||||||| | ||||||||| | || |||||    |||||||| |||||||
Sbjct: 93955 aggcaagccaaagaaaacttcctattttgattgatgccgaacggaagagggatggattgg 94014

                                                                   
Query: 383   atgaccttctgaattttgcatcatatgttgtatgctctgcaaagtttcctcagg 436
             | || ||||| ||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct: 94015 acgagcttctcaatttcgcatcttatgttgtatgctctgcaaaatttcctcagg 94068



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 74/88 (84%)
 Strand = Plus / Plus

                                                                         
Query: 433   caggcctggacaggagcctcatcgacaccagttgcattggtacacatgcttctgaggtta 492
             ||||| ||||||||||||||||| ||||| ||||| |||||   ||||||| | || || 
Sbjct: 94913 caggcttggacaggagcctcatcaacaccggttgctttggtgtccatgcttttaagattg 94972

                                         
Query: 493   cctaatctcaagttcgttattgtaaccc 520
             |||||| |||||||  ||||||||||||
Sbjct: 94973 cctaatatcaagtttattattgtaaccc 95000



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 44    aggtgtccaatgatgcactaggaaaaaacattctcaaggagctgcaaga 92
             |||| ||||||||  ||| ||||| ||| ||||||||||||||||||||
Sbjct: 92667 aggtatccaatgacccacaaggaagaaatattctcaaggagctgcaaga 92715



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 136   aattcacccttcacctatataatcgtcgataaccagacg 174
             |||||||| |||||||||||||| || || |||||||||
Sbjct: 92839 aattcacctttcacctatataattgttgacaaccagacg 92877
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>gb|AC151957.1| Solanum tuberosum chromosome 5 clone PGEC13 map MAP_LOC, complete
              sequence
          Length = 135933

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 265    gtagacatggtgtattttgatgt 287
              |||||||||||||||||||||||
Sbjct: 128523 gtagacatggtgtattttgatgt 128545



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 266    tagacatggtgtattttgatgtta 289
              ||||||||||| ||||||||||||
Sbjct: 104109 tagacatggtgaattttgatgtta 104086
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>gb|AC165424.2| Mus musculus BAC clone RP24-68L23 from chromosome 17, complete sequence
          Length = 178781

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   ctcacaaaggaaaacttgttt 249
             |||||||||||||||||||||
Sbjct: 62736 ctcacaaaggaaaacttgttt 62716
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>emb|CR626910.5| Zebrafish DNA sequence from clone DKEY-204E20 in linkage group 14,
             complete sequence
          Length = 168298

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 453   atcgacaccagttgcattggt 473
             |||||||||||||||||||||
Sbjct: 37872 atcgacaccagttgcattggt 37892
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>gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, complete sequence
          Length = 159923

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 487   aggttacctaatctcaagttc 507
             |||||||||||||||||||||
Sbjct: 16660 aggttacctaatctcaagttc 16640
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>gb|AC166102.2| Mus musculus BAC clone RP23-397O23 from chromosome 17, complete sequence
          Length = 204842

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    ttgcagaagaggcaagccaa 333
              ||||||||||||||||||||
Sbjct: 187878 ttgcagaagaggcaagccaa 187897
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>gb|AC154566.2| Mus musculus BAC clone RP23-407A17 from chromosome 17, complete
            sequence
          Length = 204306

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ttgcagaagaggcaagccaa 333
            ||||||||||||||||||||
Sbjct: 8661 ttgcagaagaggcaagccaa 8680
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>gb|AY647956.1| Arabidopsis lyrata subsp. petraea AT4G30950 gene, partial cds
          Length = 1162

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 405 atatgttgtatgctctgcaaagtt 428
           ||||||| ||||||||||||||||
Sbjct: 163 atatgttttatgctctgcaaagtt 186
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>gb|BC076022.1| Danio rerio zgc:92345, mRNA (cDNA clone MGC:92345 IMAGE:7055776),
           complete cds
          Length = 1429

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 470 tggtacacatgcttctgagg 489
           ||||||||||||||||||||
Sbjct: 423 tggtacacatgcttctgagg 442
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>ref|XM_955529.1| Neurospora crassa OR74A hypothetical protein (NCU01393.1) partial
           mRNA
          Length = 1017

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 tgagactgctttgcttgttg 316
           ||||||||||||||||||||
Sbjct: 896 tgagactgctttgcttgttg 877
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>ref|XM_326885.1| Neurospora crassa OR74A hypothetical protein (NCU01393.1) partial
           mRNA
          Length = 1017

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 tgagactgctttgcttgttg 316
           ||||||||||||||||||||
Sbjct: 896 tgagactgctttgcttgttg 877
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>gb|AC117253.3| Mus musculus BAC clone RP24-405A12 from chromosome 19, complete
             sequence
          Length = 142903

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   tatcccccaatgaagccgga 224
             ||||||||||||||||||||
Sbjct: 72695 tatcccccaatgaagccgga 72714
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>ref|XM_537140.2| PREDICTED: Canis familiaris similar to hedgehog acyltransferase
            (LOC480017), mRNA
          Length = 1886

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  gtattttgatgttagactgcatga 299
            ||||||||||||| ||||||||||
Sbjct: 1071 gtattttgatgttggactgcatga 1094
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>gb|AC138452.10| Medicago truncatula clone mth2-17p11, complete sequence
          Length = 127710

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   tggatgaccttctgaatttt 399
             ||||||||||||||||||||
Sbjct: 24293 tggatgaccttctgaatttt 24274
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>gb|AC147430.9| Medicago truncatula clone mth2-71e6, complete sequence
          Length = 125478

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    tggatgaccttctgaatttt 399
              ||||||||||||||||||||
Sbjct: 105908 tggatgaccttctgaatttt 105889
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>gb|BC068940.1| Xenopus laevis CDH1 protein, mRNA (cDNA clone MGC:83193
           IMAGE:6632712), complete cds
          Length = 3802

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 gactgctttgcttgttgcag 319
           ||||||||||||||||||||
Sbjct: 104 gactgctttgcttgttgcag 123
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>gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 245907

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 232    acaaaggaaaacttgtttgctgct 255
              |||||||||||| |||||||||||
Sbjct: 193721 acaaaggaaaacgtgtttgctgct 193744
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>emb|AL513023.12| Human DNA sequence from clone RP11-256A6 on chromosome 6, complete
            sequence
          Length = 165699

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 414  atgctctgcaaagtttcctcaggc 437
            |||||||| |||||||||||||||
Sbjct: 5250 atgctctggaaagtttcctcaggc 5227
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>ref|XM_503310.1| Yarrowia lipolytica CLIB122, YALI0D26315g predicted mRNA
          Length = 4584

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   tccaaggtgtccaatgatgc 59
            ||||||||||||||||||||
Sbjct: 3193 tccaaggtgtccaatgatgc 3212
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>emb|X78546.1|XLXBCADH X.laevis XB-cad mRNA for XB-cadherin
          Length = 3750

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 gactgctttgcttgttgcag 319
           ||||||||||||||||||||
Sbjct: 112 gactgctttgcttgttgcag 131
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>emb|BX294017.1|NCB7O17 Neurospora crassa DNA linkage group V BAC clone B7O17
          Length = 26447

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   tgagactgctttgcttgttg 316
             ||||||||||||||||||||
Sbjct: 21740 tgagactgctttgcttgttg 21759
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>emb|AJ315750.1|YLI315750 Yarrowia lipolytica sin3 gene
          Length = 5332

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   tccaaggtgtccaatgatgc 59
            ||||||||||||||||||||
Sbjct: 3458 tccaaggtgtccaatgatgc 3477
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>emb|BX511110.5| Zebrafish DNA sequence from clone CH211-235L10 in linkage group 7,
             complete sequence
          Length = 89482

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   tggtacacatgcttctgagg 489
             ||||||||||||||||||||
Sbjct: 51332 tggtacacatgcttctgagg 51313
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>gb|AC074325.7| Homo sapiens chromosome 10 clone RP11-542E6, complete sequence
          Length = 158587

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   aagaggcaagccaaagaaaa 339
             ||||||||||||||||||||
Sbjct: 57997 aagaggcaagccaaagaaaa 57978
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>dbj|AK086879.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030007J07 product:unclassifiable, full
            insert sequence
          Length = 1272

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  tatcccccaatgaagccgga 224
            ||||||||||||||||||||
Sbjct: 1175 tatcccccaatgaagccgga 1156
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 310      cttgttgcagaagaggcaag 329
                ||||||||||||||||||||
Sbjct: 26245060 cttgttgcagaagaggcaag 26245079
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>ref|NM_001002449.1| Danio rerio zgc:92345 (zgc:92345), mRNA
          Length = 1429

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 470 tggtacacatgcttctgagg 489
           ||||||||||||||||||||
Sbjct: 423 tggtacacatgcttctgagg 442
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>gb|AC155075.10| Mus musculus chromosome 5, clone RP24-82B9, complete sequence
          Length = 236335

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    gagctcacaaaggaaaactt 245
              ||||||||||||||||||||
Sbjct: 139392 gagctcacaaaggaaaactt 139373
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>gb|AC147512.15| Mus musculus chromosome 10, clone RP23-464F18, complete sequence
          Length = 187826

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     gccgctcgcctgggcctcag 25
             ||||||||||||||||||||
Sbjct: 87828 gccgctcgcctgggcctcag 87809
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 310      cttgttgcagaagaggcaag 329
                ||||||||||||||||||||
Sbjct: 26173236 cttgttgcagaagaggcaag 26173255
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>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 133978

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  cttgttgcagaagaggcaag 329
            ||||||||||||||||||||
Sbjct: 9044 cttgttgcagaagaggcaag 9063
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>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144241

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    cttgttgcagaagaggcaag 329
              ||||||||||||||||||||
Sbjct: 135298 cttgttgcagaagaggcaag 135317
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>emb|AM084333.1| Mus musculus chromosome 12 Igh-C and proximal IgH-V region
          Length = 124263

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   tcatatgttgtatgctctgc 422
             ||||||||||||||||||||
Sbjct: 50367 tcatatgttgtatgctctgc 50386
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>gb|AC001229.1|F5I14 Sequence of BAC F5I14 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 109560

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   ttttgcatcatatgttgtat 415
             ||||||||||||||||||||
Sbjct: 41254 ttttgcatcatatgttgtat 41235
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>emb|AJ972403.2| Mus musculus chromosome 12 BAC clone 4k8
          Length = 149371

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   tcatatgttgtatgctctgc 422
             ||||||||||||||||||||
Sbjct: 71458 tcatatgttgtatgctctgc 71439
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      tccaaggtgtccaatgatgc 59
               ||||||||||||||||||||
Sbjct: 3502914 tccaaggtgtccaatgatgc 3502933
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>emb|AL772338.9| Mouse DNA sequence from clone RP23-47A6 on chromosome 4, complete
             sequence
          Length = 235366

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   gctcacaaaggaaaacttgt 247
             ||||||||||||||||||||
Sbjct: 77651 gctcacaaaggaaaacttgt 77670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,862,848
Number of Sequences: 3902068
Number of extensions: 4862848
Number of successful extensions: 101009
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100849
Number of HSP's gapped (non-prelim): 151
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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