ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags13j01 |
|---|---|
| Clone Library Name | barley_pub |
>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC13III) Length = 320 Score = 218 bits (556), Expect = 8e-57 Identities = 104/124 (83%), Positives = 108/124 (87%) Frame = +3 Query: 12 EARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPA 191 +ARH+GQNYVFALLT Y DPPAGV IREGLHYNPYFPGGAIAMPKML DGA+EYEDG PA Sbjct: 197 KARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPA 256 Query: 192 TEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKLVL 371 TEAQMGKDVVSFLSWAAEPEMEERKLMG KWIF YYRR+RWSVLKSRKLVL Sbjct: 257 TEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVL 316 Query: 372 DVVN 383 DVVN Sbjct: 317 DVVN 320
>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC18I) (Fragment) Length = 260 Score = 218 bits (554), Expect = 1e-56 Identities = 103/124 (83%), Positives = 108/124 (87%) Frame = +3 Query: 12 EARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPA 191 +ARH+GQNYVFALLT Y DPPAGV IREGLHYNPYFPGGAIAMPKML DGA+EYEDG PA Sbjct: 137 KARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPA 196 Query: 192 TEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKLVL 371 TEAQMGKDVVSFL+WAAEPEMEERKLMG KWIF YYRR+RWSVLKSRKLVL Sbjct: 197 TEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVL 256 Query: 372 DVVN 383 DVVN Sbjct: 257 DVVN 260
>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor| Length = 332 Score = 145 bits (365), Expect = 1e-34 Identities = 67/122 (54%), Positives = 89/122 (72%), Gaps = 1/122 (0%) Frame = +3 Query: 12 EARHDGQNYVFALLTGYHD-PPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTP 188 +ARH G +Y+F+LLTGY D PPAG + GL++NPYFPG IAM ++L DG ++YEDGTP Sbjct: 191 KARHGGCDYIFSLLTGYPDEPPAGASVGAGLNFNPYFPGTGIAMARVLYDGLVDYEDGTP 250 Query: 189 ATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKLV 368 A+ +QM KDVV FL+WAAEPEM++RK MG+K + Y +R +W+ LKSRK+V Sbjct: 251 ASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYVKRYKWAWLKSRKIV 310 Query: 369 LD 374 D Sbjct: 311 YD 312
>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor| Length = 292 Score = 137 bits (345), Expect = 2e-32 Identities = 62/122 (50%), Positives = 87/122 (71%), Gaps = 1/122 (0%) Frame = +3 Query: 12 EARHDGQNYVFALLTGY-HDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTP 188 +ARH G +Y+FALLTGY +PPAGV + G +YNPYFPGG+IAM ++L D +EYEDGTP Sbjct: 167 KARHGGPDYIFALLTGYPEEPPAGVVLPPGANYNPYFPGGSIAMGRVLFDDLVEYEDGTP 226 Query: 189 ATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKLV 368 AT +QM KDV +FL W +EPE +ERK +G+K + + ++ +W+ +KSRK+V Sbjct: 227 ATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLLSVWVKKFKWASIKSRKIV 286 Query: 369 LD 374 + Sbjct: 287 FN 288
>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor| Length = 309 Score = 137 bits (345), Expect = 2e-32 Identities = 62/122 (50%), Positives = 87/122 (71%), Gaps = 1/122 (0%) Frame = +3 Query: 12 EARHDGQNYVFALLTGYHD-PPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTP 188 +ARH G +Y+F+LLTGY D PPAGV + G +YNPYFPGG+IAM ++L D +EYEDGTP Sbjct: 182 KARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTP 241 Query: 189 ATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKLV 368 AT +QM KDV +FL+W AEPE +ERK +G+K + + ++ +W+ +K+RK V Sbjct: 242 ATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFV 301 Query: 369 LD 374 + Sbjct: 302 FN 303
>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 135 bits (341), Expect = 7e-32 Identities = 63/117 (53%), Positives = 82/117 (70%) Frame = +3 Query: 15 ARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPAT 194 ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AI M + +EY+DGTPAT Sbjct: 203 ARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPAT 262 Query: 195 EAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKL 365 +Q+ KDV +FL WA+EPE + RK MG+K + +R +WSVLKSRKL Sbjct: 263 MSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWSVLKSRKL 319
>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 135 bits (341), Expect = 7e-32 Identities = 63/117 (53%), Positives = 83/117 (70%) Frame = +3 Query: 15 ARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPAT 194 ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AIAM + +E++DGTPAT Sbjct: 203 ARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPAT 262 Query: 195 EAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKL 365 +Q+ KDV +FL WA+EPE + RK MG+K + +R +WSVLKSRKL Sbjct: 263 MSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome| c-1) Length = 241 Score = 135 bits (340), Expect = 9e-32 Identities = 63/117 (53%), Positives = 83/117 (70%) Frame = +3 Query: 15 ARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPAT 194 ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AI M + + +E++DGTPAT Sbjct: 119 ARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPAT 178 Query: 195 EAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKL 365 +Q+ KDV +FL WAAEPE + RK MG+K + +R +WSVLKSRKL Sbjct: 179 MSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 235
>CY1_EUGGR (P20114) Cytochrome c1, heme protein| Length = 243 Score = 115 bits (288), Expect = 1e-25 Identities = 60/124 (48%), Positives = 71/124 (57%), Gaps = 1/124 (0%) Frame = +3 Query: 15 ARHDGQNYVFALLTGYHDP-PAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPA 191 ARH G +Y++ALLTGY P P GVQ+ YNPYF GG I MP L D IEYEDGTPA Sbjct: 117 ARHGGVDYIYALLTGYGRPVPGGVQLSTTQWYNPYFHGGIIGMPPPLTDDMIEYEDGTPA 176 Query: 192 TEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLKSRKLVL 371 + QM KDV FL W + P +ERKL+G K I YY R + +SR+L Sbjct: 177 SVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYNRFLSGLWRSRRLAF 236 Query: 372 DVVN 383 N Sbjct: 237 RPFN 240
>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]| Length = 687 Score = 99.4 bits (246), Expect = 7e-21 Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Frame = +3 Query: 6 YHEARHDGQNYVFALLTGYHDP-PAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDG 182 + + + G +YV A+L G+ + P GV I EG +YN YFPG AI MPK L DG + Y+DG Sbjct: 571 FTQYQEQGPDYVSAVLQGFEEKVPEGVTIPEGSYYNKYFPGHAIKMPKPLSDGQVTYDDG 630 Query: 183 TPATEAQMGKDVVSFLSWAAEPEMEERKLMG 275 +PAT AQ KDV +FL W AEP ME RK +G Sbjct: 631 SPATVAQYSKDVTTFLMWTAEPHMEARKRLG 661
>CY1_RHORU (P23135) Cytochrome c1 precursor| Length = 272 Score = 93.6 bits (231), Expect = 4e-19 Identities = 48/106 (45%), Positives = 64/106 (60%), Gaps = 16/106 (15%) Frame = +3 Query: 12 EARHDGQNYVFALLTGYHDPPAG----------------VQIREGLHYNPYFPGGAIAMP 143 +AR G NY+++LL GY G V E ++N YFPG AI+MP Sbjct: 142 KARPGGPNYIYSLLEGYASDSPGEPAEWWVKQQQEKGLEVAFNEAKYFNDYFPGHAISMP 201 Query: 144 KMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVK 281 LMD I YEDGT AT+ QM +DVV++L+WAAEPE++ RK +G+K Sbjct: 202 PPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKSLGLK 247
>CY1_RHOVI (P81379) Cytochrome c1 precursor| Length = 282 Score = 92.4 bits (228), Expect = 9e-19 Identities = 41/90 (45%), Positives = 56/90 (62%) Frame = +3 Query: 6 YHEARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGT 185 + + +G +Y+ ALL GY DPP ++ +G YN YFPG I M + DG + Y DGT Sbjct: 163 FTQYNENGVDYIVALLNGYEDPPERFKVPDGSFYNKYFPGHIIGMTPPIADGLVTYGDGT 222 Query: 186 PATEAQMGKDVVSFLSWAAEPEMEERKLMG 275 P T+ Q KDV +FL WAAEP ++ RK +G Sbjct: 223 PETQLQYSKDVAAFLMWAAEPTLDVRKRIG 252
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 71.2 bits (173), Expect = 2e-12 Identities = 40/109 (36%), Positives = 53/109 (48%) Frame = +3 Query: 27 GQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQM 206 G Y+ A+LTGY D + L++N F G I M L D + YEDGTPAT QM Sbjct: 337 GPEYIHAVLTGY-DGEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQM 395 Query: 207 GKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYRRMRWSVLK 353 DV +FL W AEP+M +RK +G + + W +K Sbjct: 396 ATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTNKKLWQPIK 444
>CY1_RHOSH (Q02760) Cytochrome c1 precursor| Length = 285 Score = 65.1 bits (157), Expect = 2e-10 Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 21/133 (15%) Frame = +3 Query: 27 GQNYVFALLTGY-HDPPAGVQIRE--GLHYNPYFPGGA------------------IAMP 143 G Y++++LTG+ +PP + E G +YN F G+ IAMP Sbjct: 149 GPEYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMP 208 Query: 144 KMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXY 323 LMD +EY DG A+ M +DV +FL WAAEP++ RK G + Sbjct: 209 PPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYL 268 Query: 324 YRRMRWSVLKSRK 362 + W+ +K +K Sbjct: 269 TNKRLWAGVKGKK 281
>CY1_RHOCA (P08501) Cytochrome c1 precursor| Length = 279 Score = 63.9 bits (154), Expect = 3e-10 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 19/131 (14%) Frame = +3 Query: 27 GQNYVFALLTGYHD-PPAGVQIREGLHYNPYFPGGAIA------------------MPKM 149 G Y++ + G+ + P + +G +YN F G + MP Sbjct: 148 GPEYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPP 207 Query: 150 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXXYYR 329 L+D + YEDGTPAT QM +DV +FL WAAEP++ RK MG+ + Sbjct: 208 LVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTN 267 Query: 330 RMRWSVLKSRK 362 + W+ K K Sbjct: 268 KRLWAPYKGHK 278
>RSH1_MAIZE (Q41853) Homeobox protein rough sheath 1| Length = 351 Score = 29.3 bits (64), Expect = 9.5 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 17/90 (18%) Frame = -3 Query: 590 RYQLAKKYSKITAPLREMLLQQRKKTKEIVPK------V*W-----------ETTRVAKY 462 +YQL KKYS + LR+ +++KK K +PK + W ET ++A Sbjct: 234 KYQLLKKYSGYLSSLRQEFSKKKKKGK--LPKEARQKLLHWWELHYKWPYPSETEKIA-- 289 Query: 461 TTESPYFDRFCLKTRCCNRKKKQWSLVDDV 372 ES D+ + N++K+ W +D+ Sbjct: 290 LAESTGLDQKQINNWFINQRKRHWKPSEDM 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,941,166 Number of Sequences: 219361 Number of extensions: 1920407 Number of successful extensions: 4760 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4608 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4752 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
