>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 112 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMC 5
           LPS    L  A   +H IR    R+L L Q+R+E C
Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESC 492

>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 112 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMC 5
           LPS    L  A   +H IR    R+L L Q+R+E C
Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESC 492

>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 112 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMC 5
           LPS    L  A   +H IR    R+L L Q+R+E C
Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESC 492

>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein) (Putative gene 8 protein) (Pg8)
          Length = 782

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 112 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMC 5
           LPS    L  A   +H IR    R+L L Q+R+E C
Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIARKLALAQLRQESC 492

>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A|
           subunit (Voltage-gated calcium channel alpha subunit
           Cav2.1) (Calcium channel, L type, alpha-1 polypeptide
           isoform 4) (Brain calcium channel I) (BI)
          Length = 2164

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -3

Query: 235 RHGSLNQ*NHTFSHHHLPLEALTDRYKLGDRKSSRSNRRCSLPSRQRHLGNAAPG 71
           R   L Q  H     H P +A T+R K GD     ++R  +    +RH     PG
Sbjct: 832 RESELQQREHAPPREHAPWDADTERAKAGDAPRRHTHRPVAEGEPRRHRARRRPG 886

>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical|
           coiled-coil rod protein)
          Length = 782

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 112 LPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMC 5
           LPS    L  A   +H IR    ++L L Q+R+E C
Sbjct: 457 LPSLNNRLSYAVRKVHTIRGLIAQKLALAQLRQESC 492

>HD_FUGRU (P51112) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3148

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 260  NMMLSLHSSAWFPKSVKSH 204
            NM+LSL SSAWFP  + +H
Sbjct: 1057 NMVLSLLSSAWFPLDLSAH 1075

>SAX_RANCA (P31226) Saxiphilin precursor (SAX)|
          Length = 844

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 154 LGDRKSSRSNRRCSLPSRQRHLGN 83
           +GD K+S +N +CSL  ++ + GN
Sbjct: 656 IGDPKNSAANTKCSLSDKEAYYGN 679

>YKK5_YEAST (P34250) Hypothetical 125.6 kDa protein in AAT1-GFA1 intergenic|
           region
          Length = 1132

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 187 LPLEALTDRYKLGDRKSSRSNRRCSLPSR 101
           +P+E    RY L +R + R  R  SLP+R
Sbjct: 163 VPVEVEPPRYSLSNRSNQRGGRAYSLPTR 191

>RAF1_XENLA (P09560) RAF proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (C-RAF)
          Length = 638

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 169 TDRYKLGDRKSSRSNRRCSLPSRQRHLGNAAPGIHNIRRSFCRRLKLCQMRREMCS 2
           +D  KL D   + S  R  LP++QR + N   G+ ++     + LK+  ++ E C+
Sbjct: 43  SDDGKLSDTSKTSSTMRVYLPNKQRTVVNVRSGM-SLHDCLMKSLKVRGLQPECCA 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,348,272
Number of Sequences: 219361
Number of extensions: 682746
Number of successful extensions: 1666
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)