ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags13h14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ436930.1| Phalaris canariensis ramosa 3 (RA3) mRNA, partial cds Length = 747 Score = 436 bits (220), Expect = e-119 Identities = 283/304 (93%) Strand = Plus / Plus Query: 318 agagctggggcgcgctggcggagacggtgaagggggtgatgcgggagtacccgaagctgc 377 ||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct: 410 agagctgggcggcgctggcggagacggtgaaggcggtggtgcgggagtacccgaagctgc 469 Query: 378 gcatgtcgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggca 437 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 ggctgtcgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggca 529 Query: 438 aggccctcgagttcctgctcgagtcgctgggcttcgccgactgcagcaacgtgctgcccg 497 |||| || ||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 530 aggcgctggagtttttgctcgagtcgctgggcttcgccgactgcagcaacgtcctgcccg 589 Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcggcggaggggcc 557 | |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | Sbjct: 590 tgtacatcggcgacgaccgcaccgacgaggacgctttcaaggtgctgcggcggcgggggc 649 Query: 558 agggcgtcgggatcctcgtctccaagcaccccaaggacaccagcgcatccttctcgctgc 617 ||||||| |||||||| || || |||||||||||||| |||||||| ||||||||||||| Sbjct: 650 agggcgtggggatcctggtgtcgaagcaccccaaggagaccagcgcgtccttctcgctgc 709 Query: 618 agga 621 |||| Sbjct: 710 agga 713 Score = 119 bits (60), Expect = 1e-23 Identities = 60/60 (100%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 352 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 411
>gb|DQ436928.1| Eragrostis tef ramosa 3 (RA3) mRNA, partial cds Length = 747 Score = 404 bits (204), Expect = e-109 Identities = 261/280 (93%) Strand = Plus / Plus Query: 336 cggagacggtgaagggggtgatgcgggagtacccgaagctgcgcatgtcgcaggggcgga 395 |||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct: 428 cggagacggtgaagggcgtgatgcgggagtacccgaagctgcggctgacgcaggggcgga 487 Query: 396 tggtgttcgaggtgcggcccaccatcaagtgggacaagggcaaggccctcgagttcctgc 455 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 488 tggtgttcgaggtgcggcccaccatcaagtgggataagggcaaggccctcgagttcctgc 547 Query: 456 tcgagtcgctgggcttcgccgactgcagcaacgtgctgcccgtctacatcggcgacgacc 515 ||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||| Sbjct: 548 tcgagtcgctgggtttcgctgactgcagcaacgtgctgccggtgtacatcggcgacgacc 607 Query: 516 gcaccgacgaggacgccttcaaggtgctgcggcggaggggccagggcgtcgggatcctcg 575 ||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||| | Sbjct: 608 gcaccgacgaggacgccttcaaggtcctgcggcggcgcggccagggcgtggggatcctgg 667 Query: 576 tctccaagcaccccaaggacaccagcgcatccttctcgct 615 | ||||||||||||||||| || ||||| |||| |||||| Sbjct: 668 tttccaagcaccccaaggagacgagcgcgtcctactcgct 707 Score = 97.6 bits (49), Expect = 4e-17 Identities = 61/65 (93%) Strand = Plus / Plus Query: 9 ccggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacg 68 ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 347 ccggcgcgaaggtggagaacaacaagttctgcgtgtccgtccacttcagaaacgtcgacg 406 Query: 69 aaaag 73 ||||| Sbjct: 407 aaaag 411
>ref|XM_482349.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1113 Score = 281 bits (142), Expect = 1e-72 Identities = 214/238 (89%) Strand = Plus / Plus Query: 384 cgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggcaaggccc 443 |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 800 cgcaggggaggatggtgttcgagatccggcccaccatcaagtgggacaagggcaaggccc 859 Query: 444 tcgagttcctgctcgagtcgctgggcttcgccgactgcagcaacgtgctgcccgtctaca 503 |||||||||| ||||||||||| || ||||||||||||| |||||||||||| || |||| Sbjct: 860 tcgagttcctcctcgagtcgctagggttcgccgactgcaccaacgtgctgccggtgtaca 919 Query: 504 tcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcggcggaggggccagggcg 563 ||||||||||||| |||||||||||||| ||||||||||| || ||| ||||||||| Sbjct: 920 tcggcgacgaccggaccgacgaggacgcgttcaaggtgctccgcaagagaggccagggca 979 Query: 564 tcgggatcctcgtctccaagcaccccaaggacaccagcgcatccttctcgctgcagga 621 |||| |||||||| |||||| ||||||||||||||| ||| |||| ||| |||||||| Sbjct: 980 tcggcatcctcgtgtccaagtaccccaaggacaccaacgcctcctactccctgcagga 1037 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 |||||||||||||||||||||||||| || || |||||||||||||| ||||| |||||| Sbjct: 676 gccaaggtggagaacaacaagttctgtgtgtctgtccacttcagatgtgtcgatgaaaag 735
>ref|XM_450681.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1206 Score = 242 bits (122), Expect = 1e-60 Identities = 197/222 (88%) Strand = Plus / Plus Query: 318 agagctggggcgcgctggcggagacggtgaagggggtgatgcgggagtacccgaagctgc 377 |||| ||||| ||| ||||||||||||||| | ||||| || |||||| |||| ||||| Sbjct: 848 agagttggggggcgttggcggagacggtgaggagggtggtgagggagttcccgcggctgc 907 Query: 378 gcatgtcgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggca 437 | || |||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 908 ggctgagccaggggaggatggtgttcgaggtgcggccgaccatcaagtgggacaagggca 967 Query: 438 aggccctcgagttcctgctcgagtcgctgggcttcgccgactgcagcaacgtgctgcccg 497 |||||||||||||||| ||||| ||||| || ||||||||||||||| |||||||||| | Sbjct: 968 aggccctcgagttcctcctcgactcgctcggtttcgccgactgcagcgacgtgctgccgg 1027 Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaagg 539 |||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 1028 tctacatcggcgacgaccgcacggacgaggacgcgttcaagg 1069 Score = 93.7 bits (47), Expect = 7e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 11 ggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 787 ggcgccaaggtcgagaacaacaagttctgcgtctccgtccacttccggtgcgtcgacga 845 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 558 agggcgtcgggatcctcgtctccaagcaccccaaggacaccagcgcatccttctcgctgc 617 ||||||| |||||||| || ||||||||||||||||| || ||||| |||||||| || | Sbjct: 1067 agggcgtggggatcctggtgtccaagcaccccaaggagacgagcgcctccttctccctcc 1126 Query: 618 agga 621 |||| Sbjct: 1127 agga 1130
>gb|DQ436923.1| Pennisetum glaucum ramosa 3 (RA3) mRNA, partial cds Length = 723 Score = 167 bits (84), Expect = 5e-38 Identities = 174/204 (85%) Strand = Plus / Plus Query: 418 catcaagtgggacaagggcaaggccctcgagttcctgctcgagtcgctgggcttcgccga 477 ||||| ||||||||||||||||||| | ||||| |||||||| ||||| || |||||| | Sbjct: 486 catcatgtgggacaagggcaaggccttggagtttctgctcgaatcgctcggattcgccaa 545 Query: 478 ctgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggacgccttcaa 537 ||||||| |||| || || || |||||||| ||||||||||||||||||||||| ||||| Sbjct: 546 ctgcagcgacgtcctcccggtgtacatcggtgacgaccgcaccgacgaggacgctttcaa 605 Query: 538 ggtgctgcggcggaggggccagggcgtcgggatcctcgtctccaagcaccccaaggacac 597 ||||||| || |||||| || ||| |||| ||||||||||||||| ||||||||| || Sbjct: 606 ggtgctgaggaagaggggtcaaggcctcggcatcctcgtctccaagtgccccaaggagac 665 Query: 598 cagcgcatccttctcgctgcagga 621 | ||| |||| ||| |||||||| Sbjct: 666 gaacgcctcctactccctgcagga 689 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 |||||||| |||||||||||||||||| | ||||| ||||||||||| || || |||||| Sbjct: 328 gccaaggtcgagaacaacaagttctgcctgtccgtgcacttcagatgtgtagatgaaaag 387
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 470 ttcgccgactgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggac 529 ||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||| Sbjct: 19573646 ttcgccgactgcaccaacgtgctgccggtgtacatcggcgacgaccggaccgacgaggac 19573705 Query: 530 gccttcaaggtgctgcggcggaggggccagggcgtcgggatcctcgtctccaagcacccc 589 || ||||||||||| || ||| ||||||||| |||| |||||||| |||||| ||||| Sbjct: 19573706 gcgttcaaggtgctccgcaagagaggccagggcatcggcatcctcgtgtccaagtacccc 19573765 Query: 590 aaggacaccagcgcatccttctcgctgcagga 621 |||||||||| ||| |||| ||| |||||||| Sbjct: 19573766 aaggacaccaacgcctcctactccctgcagga 19573797 Score = 113 bits (57), Expect = 7e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 397 ggtgttcgaggtgcggcccaccatcaagtgggacaagggcaaggccctcgagttcctgct 456 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 19573448 ggtgttcgagatccggcccaccatcaagtgggacaagggcaaggccctcgagttcctcct 19573507 Query: 457 cgagtcgct 465 ||||||||| Sbjct: 19573508 cgagtcgct 19573516 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 |||||||||||||||||||||||||| || || |||||||||||||| ||||| |||||| Sbjct: 19572846 gccaaggtggagaacaacaagttctgtgtgtctgtccacttcagatgtgtcgatgaaaag 19572905 Query: 74 gt 75 || Sbjct: 19572906 gt 19572907
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 159 bits (80), Expect = 1e-35 Identities = 134/152 (88%) Strand = Plus / Plus Query: 470 ttcgccgactgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggac 529 ||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||| Sbjct: 49206 ttcgccgactgcaccaacgtgctgccggtgtacatcggcgacgaccggaccgacgaggac 49265 Query: 530 gccttcaaggtgctgcggcggaggggccagggcgtcgggatcctcgtctccaagcacccc 589 || ||||||||||| || ||| ||||||||| |||| |||||||| |||||| ||||| Sbjct: 49266 gcgttcaaggtgctccgcaagagaggccagggcatcggcatcctcgtgtccaagtacccc 49325 Query: 590 aaggacaccagcgcatccttctcgctgcagga 621 |||||||||| ||| |||| ||| |||||||| Sbjct: 49326 aaggacaccaacgcctcctactccctgcagga 49357 Score = 113 bits (57), Expect = 7e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 397 ggtgttcgaggtgcggcccaccatcaagtgggacaagggcaaggccctcgagttcctgct 456 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 49008 ggtgttcgagatccggcccaccatcaagtgggacaagggcaaggccctcgagttcctcct 49067 Query: 457 cgagtcgct 465 ||||||||| Sbjct: 49068 cgagtcgct 49076 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 |||||||||||||||||||||||||| || || |||||||||||||| ||||| |||||| Sbjct: 48406 gccaaggtggagaacaacaagttctgtgtgtctgtccacttcagatgtgtcgatgaaaag 48465 Query: 74 gt 75 || Sbjct: 48466 gt 48467
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 145 bits (73), Expect = 2e-31 Identities = 130/149 (87%) Strand = Plus / Plus Query: 317 cagagctggggcgcgctggcggagacggtgaagggggtgatgcgggagtacccgaagctg 376 ||||| ||||| ||| ||||||||||||||| | ||||| || |||||| |||| |||| Sbjct: 12199194 cagagttggggggcgttggcggagacggtgaggagggtggtgagggagttcccgcggctg 12199253 Query: 377 cgcatgtcgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggc 436 || || |||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 12199254 cggctgagccaggggaggatggtgttcgaggtgcggccgaccatcaagtgggacaagggc 12199313 Query: 437 aaggccctcgagttcctgctcgagtcgct 465 ||||||||||||||||| ||||| ||||| Sbjct: 12199314 aaggccctcgagttcctcctcgactcgct 12199342 Score = 109 bits (55), Expect = 1e-20 Identities = 67/71 (94%) Strand = Plus / Plus Query: 470 ttcgccgactgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggac 529 ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 12199426 ttcgccgactgcagcgacgtgctgccggtctacatcggcgacgaccgcacggacgaggac 12199485 Query: 530 gccttcaaggt 540 || |||||||| Sbjct: 12199486 gcgttcaaggt 12199496 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 11 ggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaa 70 ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 12199052 ggcgccaaggtcgagaacaacaagttctgcgtctccgtccacttccggtgcgtcgacgag 12199111 Query: 71 aaggta 76 |||||| Sbjct: 12199112 aaggta 12199117 Score = 69.9 bits (35), Expect = 9e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 543 tgcggcggaggggccagggcgtcgggatcctcgtctccaagcaccccaaggacaccagcg 602 |||||||| | || |||||||| |||||||| || ||||||||||||||||| || |||| Sbjct: 12199713 tgcggcggcgtgggcagggcgtggggatcctggtgtccaagcaccccaaggagacgagcg 12199772 Query: 603 catccttctcgctgcagga 621 | |||||||| || ||||| Sbjct: 12199773 cctccttctccctccagga 12199791
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 145 bits (73), Expect = 2e-31 Identities = 130/149 (87%) Strand = Plus / Plus Query: 317 cagagctggggcgcgctggcggagacggtgaagggggtgatgcgggagtacccgaagctg 376 ||||| ||||| ||| ||||||||||||||| | ||||| || |||||| |||| |||| Sbjct: 110653 cagagttggggggcgttggcggagacggtgaggagggtggtgagggagttcccgcggctg 110712 Query: 377 cgcatgtcgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggc 436 || || |||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 110713 cggctgagccaggggaggatggtgttcgaggtgcggccgaccatcaagtgggacaagggc 110772 Query: 437 aaggccctcgagttcctgctcgagtcgct 465 ||||||||||||||||| ||||| ||||| Sbjct: 110773 aaggccctcgagttcctcctcgactcgct 110801 Score = 109 bits (55), Expect = 1e-20 Identities = 67/71 (94%) Strand = Plus / Plus Query: 470 ttcgccgactgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggac 529 ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 110885 ttcgccgactgcagcgacgtgctgccggtctacatcggcgacgaccgcacggacgaggac 110944 Query: 530 gccttcaaggt 540 || |||||||| Sbjct: 110945 gcgttcaaggt 110955 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 11 ggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaa 70 ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 110511 ggcgccaaggtcgagaacaacaagttctgcgtctccgtccacttccggtgcgtcgacgag 110570 Query: 71 aaggta 76 |||||| Sbjct: 110571 aaggta 110576 Score = 69.9 bits (35), Expect = 9e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 543 tgcggcggaggggccagggcgtcgggatcctcgtctccaagcaccccaaggacaccagcg 602 |||||||| | || |||||||| |||||||| || ||||||||||||||||| || |||| Sbjct: 111172 tgcggcggcgtgggcagggcgtggggatcctggtgtccaagcaccccaaggagacgagcg 111231 Query: 603 catccttctcgctgcagga 621 | |||||||| || ||||| Sbjct: 111232 cctccttctccctccagga 111250
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 145 bits (73), Expect = 2e-31 Identities = 130/149 (87%) Strand = Plus / Plus Query: 317 cagagctggggcgcgctggcggagacggtgaagggggtgatgcgggagtacccgaagctg 376 ||||| ||||| ||| ||||||||||||||| | ||||| || |||||| |||| |||| Sbjct: 133573 cagagttggggggcgttggcggagacggtgaggagggtggtgagggagttcccgcggctg 133632 Query: 377 cgcatgtcgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggc 436 || || |||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 133633 cggctgagccaggggaggatggtgttcgaggtgcggccgaccatcaagtgggacaagggc 133692 Query: 437 aaggccctcgagttcctgctcgagtcgct 465 ||||||||||||||||| ||||| ||||| Sbjct: 133693 aaggccctcgagttcctcctcgactcgct 133721 Score = 109 bits (55), Expect = 1e-20 Identities = 67/71 (94%) Strand = Plus / Plus Query: 470 ttcgccgactgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggac 529 ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 133805 ttcgccgactgcagcgacgtgctgccggtctacatcggcgacgaccgcacggacgaggac 133864 Query: 530 gccttcaaggt 540 || |||||||| Sbjct: 133865 gcgttcaaggt 133875 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 11 ggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaa 70 ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 133431 ggcgccaaggtcgagaacaacaagttctgcgtctccgtccacttccggtgcgtcgacgag 133490 Query: 71 aaggta 76 |||||| Sbjct: 133491 aaggta 133496 Score = 69.9 bits (35), Expect = 9e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 543 tgcggcggaggggccagggcgtcgggatcctcgtctccaagcaccccaaggacaccagcg 602 |||||||| | || |||||||| |||||||| || ||||||||||||||||| || |||| Sbjct: 134092 tgcggcggcgtgggcagggcgtggggatcctggtgtccaagcaccccaaggagacgagcg 134151 Query: 603 catccttctcgctgcagga 621 | |||||||| || ||||| Sbjct: 134152 cctccttctccctccagga 134170
>ref|XM_467838.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1424 Score = 141 bits (71), Expect = 3e-30 Identities = 167/199 (83%) Strand = Plus / Plus Query: 423 agtgggacaagggcaaggccctcgagttcctgctcgagtcgctgggcttcgccgactgca 482 ||||||||||||||||||| || |||||| |||| || |||||||| |||||| ||||| Sbjct: 933 agtgggacaagggcaaggctctggagttcttgcttgaatcgctgggattcgccaactgcg 992 Query: 483 gcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgc 542 || |||| |||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 993 gcgacgtcatgccggtgtacatcggtgacgaccgcaccgacgaggacgccttcaaggtgt 1052 Query: 543 tgcggcggaggggccagggcgtcgggatcctcgtctccaagcaccccaaggacaccagcg 602 || | ||| || |||||| | || ||||| ||||||||| |||||||||||||| || Sbjct: 1053 tgagaaagagaggtcagggcctgggaatcctagtctccaagtgccccaaggacaccaacg 1112 Query: 603 catccttctcgctgcagga 621 | |||| ||| || ||||| Sbjct: 1113 cctcctactctctccagga 1131 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 ||||||||||||||||||||||||||| | ||||||||||||||||| || || |||||| Sbjct: 770 gccaaggtggagaacaacaagttctgcctgtccgtccacttcagatgtgtagatgaaaag 829
>dbj|AK121015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048F14, full insert sequence Length = 1425 Score = 141 bits (71), Expect = 3e-30 Identities = 167/199 (83%) Strand = Plus / Plus Query: 423 agtgggacaagggcaaggccctcgagttcctgctcgagtcgctgggcttcgccgactgca 482 ||||||||||||||||||| || |||||| |||| || |||||||| |||||| ||||| Sbjct: 933 agtgggacaagggcaaggctctggagttcttgcttgaatcgctgggattcgccaactgcg 992 Query: 483 gcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgc 542 || |||| |||| || |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 993 gcgacgtcatgccggtgtacatcggtgacgaccgcaccgacgaggacgccttcaaggtgt 1052 Query: 543 tgcggcggaggggccagggcgtcgggatcctcgtctccaagcaccccaaggacaccagcg 602 || | ||| || |||||| | || ||||| ||||||||| |||||||||||||| || Sbjct: 1053 tgagaaagagaggtcagggcctgggaatcctagtctccaagtgccccaaggacaccaacg 1112 Query: 603 catccttctcgctgcagga 621 | |||| ||| || ||||| Sbjct: 1113 cctcctactctctccagga 1131 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 ||||||||||||||||||||||||||| | ||||||||||||||||| || || |||||| Sbjct: 770 gccaaggtggagaacaacaagttctgcctgtccgtccacttcagatgtgtagatgaaaag 829
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 3e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 ||||||||||||||||||||||||||| | ||||||||||||||||| || || |||||| Sbjct: 31682904 gccaaggtggagaacaacaagttctgcctgtccgtccacttcagatgtgtagatgaaaag 31682963 Query: 74 gtaggc 79 |||||| Sbjct: 31682964 gtaggc 31682969 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 470 ttcgccgactgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggac 529 |||||| ||||| || |||| |||| || |||||||| ||||||||||||||||||||| Sbjct: 31683594 ttcgccaactgcggcgacgtcatgccggtgtacatcggtgacgaccgcaccgacgaggac 31683653 Query: 530 gccttcaaggt 540 ||||||||||| Sbjct: 31683654 gccttcaaggt 31683664 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 423 agtgggacaagggcaaggccctcgagttcctgctcgagtcgctggg 468 ||||||||||||||||||| || |||||| |||| || |||||||| Sbjct: 31683347 agtgggacaagggcaaggctctggagttcttgcttgaatcgctggg 31683392 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 321 gctggggcgcgctggcggagacg 343 ||||||||||||||||||||||| Sbjct: 32730016 gctggggcgcgctggcggagacg 32730038 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 569 atcctcgtctccaagcaccccaaggacaccagcgcatccttctcgctgcagga 621 ||||| ||||||||| |||||||||||||| ||| |||| ||| || ||||| Sbjct: 31683856 atcctagtctccaagtgccccaaggacaccaacgcctcctactctctccagga 31683908
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 91.7 bits (46), Expect = 3e-15 Identities = 61/66 (92%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 ||||||||||||||||||||||||||| | ||||||||||||||||| || || |||||| Sbjct: 62691 gccaaggtggagaacaacaagttctgcctgtccgtccacttcagatgtgtagatgaaaag 62750 Query: 74 gtaggc 79 |||||| Sbjct: 62751 gtaggc 62756 Score = 77.8 bits (39), Expect = 4e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 470 ttcgccgactgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggac 529 |||||| ||||| || |||| |||| || |||||||| ||||||||||||||||||||| Sbjct: 63381 ttcgccaactgcggcgacgtcatgccggtgtacatcggtgacgaccgcaccgacgaggac 63440 Query: 530 gccttcaaggt 540 ||||||||||| Sbjct: 63441 gccttcaaggt 63451 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 423 agtgggacaagggcaaggccctcgagttcctgctcgagtcgctggg 468 ||||||||||||||||||| || |||||| |||| || |||||||| Sbjct: 63134 agtgggacaagggcaaggctctggagttcttgcttgaatcgctggg 63179 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 569 atcctcgtctccaagcaccccaaggacaccagcgcatccttctcgctgcagga 621 ||||| ||||||||| |||||||||||||| ||| |||| ||| || ||||| Sbjct: 63643 atcctagtctccaagtgccccaaggacaccaacgcctcctactctctccagga 63695
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 20 gtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaaggta 76 ||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||| Sbjct: 6291382 gtggagaacaacaagttctgcctctccgtgcacttcagatgcgtcgatgagaaggta 6291326
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 20 gtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaaggta 76 ||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||| Sbjct: 85458 gtggagaacaacaagttctgcctctccgtgcacttcagatgcgtcgatgagaaggta 85402
>gb|AF140488.1|AF140488 Oryza sativa hypothetical protein mRNA, partial cds Length = 279 Score = 79.8 bits (40), Expect = 1e-11 Identities = 55/60 (91%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacgaaaag 73 ||||||||||||||||||||||||||| | ||||||||||||||||| || || |||||| Sbjct: 39 gccaaggtggagaacaacaagttctgcctgtccgtccacttcagatgtgtagatgaaaag 98 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 422 aagtgggacaagggcaaggccctcgagttcctgctcgagtcgctgggcttcgccgactgc 481 |||||||||||||||||||| || |||||| |||| || |||||||| |||||| ||||| Sbjct: 201 aagtgggacaagggcaaggctctggagttcttgcttgaatcgctgggattcgccaactgc 260 Query: 482 agcaacgtgctgcc 495 || |||| ||||| Sbjct: 261 ggcgacgtcctgcc 274
>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete sequence Length = 137709 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcggcggaggggcc 557 |||||||||||||||||||||||||||||||||| ||| |||||| || |||||| | Sbjct: 115509 tctacatcggcgacgaccgcaccgacgaggacgcgttccgggtgctccgagcgagggggc 115450 Query: 558 agggcgtcgggatcctcgtctccaagcaccccaaggacaccagcgcatccttctc 612 | |||| ||| ||||| || || | | ||||||||||||| |||| |||||||| Sbjct: 115449 acggcgccggcatcctggtgtcgaggttccccaaggacacctgcgcctccttctc 115395 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 17 aaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||||||||| |||||||||||||| | |||||||||| Sbjct: 115771 aaggtggagaacaacaagttctgcctctccgtccacttccgccgcgtcgacga 115719 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 384 cgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggcaaggccc 443 ||||||| || | |||| ||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 115650 cgcagggccgcaaggtgctcgaggtcaggcccgccatcaagtgggacaagggcgaggccc 115591 Query: 444 tc 445 || Sbjct: 115590 tc 115589
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcggcggaggggcc 557 |||||||||||||||||||||||||||||||||| ||| |||||| || |||||| | Sbjct: 15221839 tctacatcggcgacgaccgcaccgacgaggacgcgttccgggtgctccgagcgagggggc 15221898 Query: 558 agggcgtcgggatcctcgtctccaagcaccccaaggacaccagcgcatccttctc 612 | |||| ||| ||||| || || | | ||||||||||||| |||| |||||||| Sbjct: 15221899 acggcgccggcatcctggtgtcgaggttccccaaggacacctgcgcctccttctc 15221953 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 17 aaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||||||||| |||||||||||||| | |||||||||| Sbjct: 15221577 aaggtggagaacaacaagttctgcctctccgtccacttccgccgcgtcgacga 15221629 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 384 cgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggcaaggccc 443 ||||||| || | |||| ||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 15221698 cgcagggccgcaaggtgctcgaggtcaggcccgccatcaagtgggacaagggcgaggccc 15221757 Query: 444 tc 445 || Sbjct: 15221758 tc 15221759 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 321 gctggggcgcgctggcggagacg 343 ||||||||||||||||||||||| Sbjct: 2605212 gctggggcgcgctggcggagacg 2605190
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcggcggaggggcc 557 |||||||||||||||||||||||||||||||||| ||| |||||| || |||||| | Sbjct: 15216373 tctacatcggcgacgaccgcaccgacgaggacgcgttccgggtgctccgagcgagggggc 15216432 Query: 558 agggcgtcgggatcctcgtctccaagcaccccaaggacaccagcgcatccttctc 612 | |||| ||| ||||| || || | | ||||||||||||| |||| |||||||| Sbjct: 15216433 acggcgccggcatcctggtgtcgaggttccccaaggacacctgcgcctccttctc 15216487 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 17 aaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||||||||| |||||||||||||| | |||||||||| Sbjct: 15216111 aaggtggagaacaacaagttctgcctctccgtccacttccgccgcgtcgacga 15216163 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 384 cgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggcaaggccc 443 ||||||| || | |||| ||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 15216232 cgcagggccgcaaggtgctcgaggtcaggcccgccatcaagtgggacaagggcgaggccc 15216291 Query: 444 tc 445 || Sbjct: 15216292 tc 15216293 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 321 gctggggcgcgctggcggagacg 343 ||||||||||||||||||||||| Sbjct: 2605322 gctggggcgcgctggcggagacg 2605300
>dbj|AK106316.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E01, full insert sequence Length = 1513 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcggcggaggggcc 557 |||||||||||||||||||||||||||||||||| ||| |||||| || |||||| | Sbjct: 893 tctacatcggcgacgaccgcaccgacgaggacgcgttccgggtgctccgagcgagggggc 952 Query: 558 agggcgtcgggatcctcgtctccaagcaccccaaggacaccagcgcatccttctc 612 | |||| ||| ||||| || || | | ||||||||||||| |||| |||||||| Sbjct: 953 acggcgccggcatcctggtgtcgaggttccccaaggacacctgcgcctccttctc 1007 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 17 aaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||||||||| |||||||||||||| | |||||||||| Sbjct: 631 aaggtggagaacaacaagttctgcctctccgtccacttccgccgcgtcgacga 683 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 384 cgcaggggcggatggtgttcgaggtgcggcccaccatcaagtgggacaagggcaaggccc 443 ||||||| || | |||| ||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 752 cgcagggccgcaaggtgctcgaggtcaggcccgccatcaagtgggacaagggcgaggccc 811 Query: 444 tc 445 || Sbjct: 812 tc 813
>gb|BT009639.1| Triticum aestivum clone wre1n.pk187.h5:fis, full insert mRNA sequence Length = 931 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgct 543 |||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 505 tctacatcggcgacgaccgcaccgacgaagacgcgttcaaggtgct 550 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 425 tgggacaagggcaaggccctcgagttcctgctcgagtcgct 465 ||||||||||| |||||| ||||||||||||| ||||||| Sbjct: 432 tgggacaaggggaaggccgtcgagttcctgcttcagtcgct 472
>gb|DQ436920.1| Zea mays ramosa 3 (RA3) mRNA, complete cds Length = 1086 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 417 ccatcaagtgggacaagggcaaggccctcgagttcctgctcgagtc 462 ||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 818 ccatcaagtgggacaagggcaaggccctcgagttcttgctcaagtc 863 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 8 gccggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtc 64 |||||||||| ||||||| ||||||||| |||| | |||||||||||| | |||||| Sbjct: 655 gccggcgccagggtggagcacaacaagtactgcctgtccgtccacttccgctgcgtc 711 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 500 tacatcggcgacgaccgcaccgacgaggacgccttcaaggtgct 543 |||||||| || || ||||| ||||||||||| ||||||||||| Sbjct: 901 tacatcggagatgatcgcactgacgaggacgctttcaaggtgct 944
>gb|DQ436925.1| Setaria viridis ramosa 3 (RA3) mRNA, partial cds Length = 1020 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 8 gccggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtc 64 |||||||||||||||||| ||||||||| |||| |||||||||||||| | |||||| Sbjct: 652 gccggcgccaaggtggagcacaacaagtactgcctctccgtccacttccgctgcgtc 708 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 417 ccatcaagtgggacaagggcaaggccctcgagttcctgctcgagtc 462 |||||||||||||||||||||||||||| ||||| |||||| |||| Sbjct: 815 ccatcaagtgggacaagggcaaggcccttgagtttctgctcaagtc 860 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 515 cgcaccgacgaggacgccttcaaggtgctgcggcggaggggccagggcgtcgggatcctc 574 |||||||||||||| ||||||||||||||||| | | ||| |||||| |||| ||||| Sbjct: 913 cgcaccgacgaggatgccttcaaggtgctgcgcggcatggggcagggcatcggaatcctg 972 Query: 575 gtctccaagcaccccaagga 594 || |||||| ||||||||| Sbjct: 973 gtgtccaagttccccaagga 992
>gb|DQ436921.1| Zea mays sister of ramosa 3 (SRA) mRNA, complete cds Length = 1068 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 9 ccggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtc 64 ||||||| | |||||||||||||||||||||| |||||||||||||| | |||||| Sbjct: 632 ccggcgcgacggtggagaacaacaagttctgcctctccgtccacttccgctgcgtc 687 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 417 ccatcaagtgggacaagggcaaggccctcgagttcctgctcgagtc 462 |||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 794 ccatcaagtgggacaagggcaacgccctgcagttcttgctcgagtc 839 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Plus Query: 503 atcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcg 546 ||||| ||||| |||||||||||||||| |||||||| ||||| Sbjct: 880 atcggagacgatagcaccgacgaggacgcgttcaaggtcctgcg 923
>gb|DQ436922.1| Avena strigosa sister of ramosa 3 (SRA) mRNA, partial cds Length = 753 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 417 ccatcaagtgggacaagggcaaggccctcgagttcctgctcgagtc 462 |||||||||||||||||||||| ||||| |||||| |||||||||| Sbjct: 575 ccatcaagtgggacaagggcaacgccctagagttcttgctcgagtc 620 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 512 gaccgcaccgacgaggacgccttcaaggtgctgcg 546 ||||||||||||||||| || |||||||||||||| Sbjct: 670 gaccgcaccgacgaggatgcgttcaaggtgctgcg 704 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 19 ggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcg 65 |||||||||||| ||||||||| ||||||| |||||| | ||||||| Sbjct: 423 ggtggagaacaataagttctgcctctccgtgcacttccgctgcgtcg 469
>gb|DQ436926.1| Chasmanthium latifolium sister of ramosa 3 (SRA) mRNA, partial cds Length = 744 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 9 ccggcgccaaggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtc 64 ||||||| | |||||||||||||||||||||| |||||||||| ||| | |||||| Sbjct: 344 ccggcgcgagggtggagaacaacaagttctgcctctccgtccatttccgctgcgtc 399 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 509 gacgaccgcaccgacgaggacgccttcaaggtgctgcg 546 |||||||||||||||||||| || |||||||||||||| Sbjct: 598 gacgaccgcaccgacgaggatgcgttcaaggtgctgcg 635 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 417 ccatcaagtgggacaagggcaaggccctcgagttcctgct 456 ||||||||||||||||||| || |||||||||||| |||| Sbjct: 506 ccatcaagtgggacaaggggaacgccctcgagttcttgct 545
>gb|DQ436924.1| Sorghum bicolor sister of ramosa 3 (SRA) mRNA, partial cds Length = 744 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 19 ggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||||||| |||||||||| ||| | |||||| |||| Sbjct: 354 ggtggagaacaacaagttctgcctctccgtccatttccgctgcgtccacga 404 Score = 60.0 bits (30), Expect = 9e-06 Identities = 105/130 (80%) Strand = Plus / Plus Query: 417 ccatcaagtgggacaagggcaaggccctcgagttcctgctcgagtcgctgggcttcgccg 476 ||||| |||||||||||||||| ||||| ||||| |||| ||||| || || ||||| | Sbjct: 506 ccatcgagtgggacaagggcaacgccctacagttcttgcttgagtccctcggtttcgctg 565 Query: 477 actgcagcaacgtgctgcccgtctacatcggcgacgaccgcaccgacgaggacgccttca 536 || | | ||| ||| | || | || ||||| ||||| ||||| || |||||||| |||| Sbjct: 566 acagtaacaatgtgttcccgatatatatcggagacgatcgcacggatgaggacgcgttca 625 Query: 537 aggtgctgcg 546 |||||||||| Sbjct: 626 aggtgctgcg 635
>gb|DQ436929.1| Hordeum vulgare sister of ramosa 3 (SRA) mRNA, partial cds Length = 741 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 500 tacatcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcg 546 |||||||| || |||||||| |||||||| || |||||||||||||| Sbjct: 586 tacatcggagatgaccgcacagacgaggatgcattcaaggtgctgcg 632 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 410 cggcccaccatcaagtgggacaagggcaaggccctcgagttcctgctcgagtc 462 |||||| ||||||||||||| ||||| || ||||||||| || |||| ||||| Sbjct: 496 cggccctccatcaagtgggataagggaaacgccctcgagctcttgcttgagtc 548 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctgcgtctc 45 |||| |||||||||||| ||||||||| |||| Sbjct: 346 gccatggtggagaacaataagttctgcctctc 377
>gb|BT018306.1| Zea mays clone EL01T0206G08.c mRNA sequence Length = 992 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcg 546 |||||||||| ||||| || || ||||| |||||||||||||| ||||| Sbjct: 516 tctacatcggagacgatcgaacagacgaagacgccttcaaggtactgcg 564 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 425 tgggacaagggcaaggccctcgagttcctgct 456 ||||||||||| ||||| ||||||||||||| Sbjct: 443 tgggacaagggaaaggctgtcgagttcctgct 474
>gb|AY109748.1| Zea mays CL426_1 mRNA sequence Length = 1620 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgccttcaaggtgctgcg 546 |||||||||| ||||| || || ||||| |||||||||||||| ||||| Sbjct: 1165 tctacatcggagacgatcgaacagacgaagacgccttcaaggtactgcg 1213 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 425 tgggacaagggcaaggccctcgagttcctgct 456 ||||||||||| ||||| ||||||||||||| Sbjct: 1092 tgggacaagggaaaggctgtcgagttcctgct 1123
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 504 tcggcgacgaccgcaccgacgaggacgccttc 535 |||||||||||| |||||||||||||||||| Sbjct: 2965600 tcggcgacgacctgaccgacgaggacgccttc 2965631
>ref|XM_470219.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4386 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 321 gctggggcgcgctggcggagacg 343 ||||||||||||||||||||||| Sbjct: 3872 gctggggcgcgctggcggagacg 3850
>ref|XM_479204.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1517 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 512 gaccgcaccgacgaggacgccttcaaggtgctgcg 546 ||||||||||||||||| || ||||||||| |||| Sbjct: 1051 gaccgcaccgacgaggatgctttcaaggtgttgcg 1085 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 19 ggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||| ||| | ||||| |||| | | ||||||||||| Sbjct: 804 ggtggagaacaacaagttttgcctttccgtgcactaccgctgcgtcgacga 854
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 504 tcggcgacgaccgcaccgacgaggacgcctt 534 ||||||||||| |||||||||||||||||| Sbjct: 269954 tcggcgacgacgtcaccgacgaggacgcctt 269924
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 321 gctggggcgcgctggcggagacg 343 ||||||||||||||||||||||| Sbjct: 64882 gctggggcgcgctggcggagacg 64904
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 19 ggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||| ||| | ||||| |||| | | ||||||||||| Sbjct: 25815691 ggtggagaacaacaagttttgcctttccgtgcactaccgctgcgtcgacga 25815741 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 512 gaccgcaccgacgaggacgccttcaaggt 540 ||||||||||||||||| || |||||||| Sbjct: 25816621 gaccgcaccgacgaggatgctttcaaggt 25816649
>dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1448_G06 Length = 136823 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 321 gctggggcgcgctggcggagacg 343 ||||||||||||||||||||||| Sbjct: 58251 gctggggcgcgctggcggagacg 58273
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524E08 Length = 154696 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 19 ggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||| ||| | ||||| |||| | | ||||||||||| Sbjct: 132853 ggtggagaacaacaagttttgcctttccgtgcactaccgctgcgtcgacga 132903 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 512 gaccgcaccgacgaggacgccttcaaggt 540 ||||||||||||||||| || |||||||| Sbjct: 133783 gaccgcaccgacgaggatgctttcaaggt 133811
>dbj|AK109902.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F10, full insert sequence Length = 1517 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 512 gaccgcaccgacgaggacgccttcaaggtgctgcg 546 ||||||||||||||||| || ||||||||| |||| Sbjct: 1051 gaccgcaccgacgaggatgctttcaaggtgttgcg 1085 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 19 ggtggagaacaacaagttctgcgtctccgtccacttcagatgcgtcgacga 69 |||||||||||||||||| ||| | ||||| |||| | | ||||||||||| Sbjct: 804 ggtggagaacaacaagttttgcctttccgtgcactaccgctgcgtcgacga 854
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 497 gtctacatcggcgacgaccgcaccgacgaggacgc 531 |||||| ||||||||||| ||||||||||||||| Sbjct: 3866220 gtctacctcggcgacgacatcaccgacgaggacgc 3866254 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 caccatcaagtgggacaagg 434 |||||||||||||||||||| Sbjct: 810285 caccatcaagtgggacaagg 810304
>emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chromosome 17, complete sequence Length = 201723 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 579 ccaagcaccccaaggacaccagc 601 ||||||||||||||||||||||| Sbjct: 40717 ccaagcaccccaaggacaccagc 40695
>dbj|AP006419.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT43O18, TM0307, complete sequence Length = 119858 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 15 ccaaggtggagaacaacaagttctgcgtctc 45 ||||||||||| |||||||||||||| |||| Sbjct: 119133 ccaaggtggaggacaacaagttctgcctctc 119163
>gb|BT020519.1| Arabidopsis thaliana At5g65140 gene, complete cds Length = 1113 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctg 39 ||||| |||||||||||||||||||| Sbjct: 691 gccaaagtggagaacaacaagttctg 716
>gb|BT020466.1| Arabidopsis thaliana At5g65140 gene, complete cds Length = 1487 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctg 39 ||||| |||||||||||||||||||| Sbjct: 800 gccaaagtggagaacaacaagttctg 825
>ref|NM_125913.3| Arabidopsis thaliana catalytic/ trehalose-phosphatase AT5G65140 mRNA, complete cds Length = 1530 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctg 39 ||||| |||||||||||||||||||| Sbjct: 818 gccaaagtggagaacaacaagttctg 843
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgc 531 ||||| ||||||||||| ||||||||||||||| Sbjct: 3779523 tctacctcggcgacgacatcaccgacgaggacgc 3779556 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgcctt 534 |||||||||||||||||| |||||||| || ||||| Sbjct: 2250737 tctacatcggcgacgaccttaccgacgaagatgcctt 2250773
>gb|AF096282.1| Thermus aquaticus caldophilus alpha-glucosidase gene, complete cds Length = 3105 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Minus Query: 494 cccgtctacatcggcgacgaccgcaccgacgaggacgccttc 535 ||||| |||||||| |||||| ||||||||||| ||||||| Sbjct: 285 cccgtttacatcggggacgacaccaccgacgaggccgccttc 244
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgc 531 ||||| ||||||||||| ||||||||||||||| Sbjct: 319627 tctacctcggcgacgacatcaccgacgaggacgc 319660
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 44.1 bits (22), Expect = 0.54 Identities = 31/34 (91%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgc 531 ||||| ||||||||||| ||||||||||||||| Sbjct: 297930 tctacctcggcgacgacatcaccgacgaggacgc 297963
>gb|DQ436927.1| Eragrostis tef sister of ramosa 3 (SRA) mRNA, partial cds Length = 738 Score = 44.1 bits (22), Expect = 0.54 Identities = 40/46 (86%) Strand = Plus / Plus Query: 417 ccatcaagtgggacaagggcaaggccctcgagttcctgctcgagtc 462 |||||||||||||||| || || ||||| |||||| |||| ||||| Sbjct: 500 ccatcaagtgggacaaaggaaatgccctggagttcttgctggagtc 545
>gb|AE005679.1| Caulobacter crescentus CB15 section 5 of 359 of the complete genome Length = 12370 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 523 cgaggacgccttcaaggtgctg 544 |||||||||||||||||||||| Sbjct: 10816 cgaggacgccttcaaggtgctg 10795
>dbj|AK221501.1| Arabidopsis thaliana mRNA for trehalose-6-phosphate phosphatase, complete cds, clone: RAFL07-54-E09 Length = 1479 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctg 39 ||||| |||||||||||||||||||| Sbjct: 836 gccaaagtggagaacaacaagttctg 861
>emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in linkage group 9, complete sequence Length = 201933 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 285 gcatcatgatgaattgatgatg 306 |||||||||||||||||||||| Sbjct: 170392 gcatcatgatgaattgatgatg 170413
>emb|BX833915.1|CNS0A1S0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL83ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1525 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 14 gccaaggtggagaacaacaagttctg 39 ||||| |||||||||||||||||||| Sbjct: 813 gccaaagtggagaacaacaagttctg 838
>gb|AY836577.1| Thermus thermophilus strain AT-62 alpha-glucosidase gene, partial cds; trehalose-phosphate phosphatase (otsB) gene, complete cds; and trehalose synthase (treS) gene, partial cds Length = 1836 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 494 cccgtctacatcggcgacgaccgcaccgacgaggacgccttc 535 ||||| |||||||| |||||| ||||||||||| ||||||| Sbjct: 1552 cccgtttacatcggggacgacaccaccgacgaggccgccttc 1593
>gb|AY836576.1| Thermus thermophilus strain HB8 alpha-glucosidase gene, partial cds; trehalose-phosphate phosphatase (otsB) gene, complete cds; and trehalose synthase (treS) gene, partial cds Length = 1875 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 494 cccgtctacatcggcgacgaccgcaccgacgaggacgccttc 535 ||||| |||||||| |||||| ||||||||||| ||||||| Sbjct: 1597 cccgtttacatcggggacgacaccaccgacgaggccgccttc 1638
>gb|AF135796.2| Thermus caldophilus plasmid-encoded trehalose-6-phosphate phosphatase and trehalose synthase (Tres) genes, complete cds Length = 4121 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 494 cccgtctacatcggcgacgaccgcaccgacgaggacgccttc 535 ||||| |||||||| |||||| ||||||||||| ||||||| Sbjct: 712 cccgtttacatcggggacgacaccaccgacgaggccgccttc 753
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 504 tcggcgacgaccgcaccgacgaggac 529 |||| ||||||||||||||||||||| Sbjct: 533541 tcggggacgaccgcaccgacgaggac 533566
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Minus Query: 494 cccgtctacatcggcgacgaccgcaccgacgaggacgccttc 535 ||||| |||||||| |||||| ||||||||||| ||||||| Sbjct: 449645 cccgtttacatcggggacgacaccaccgacgaggccgccttc 449604
>dbj|AB013395.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23 Length = 86064 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 14 gccaaggtggagaacaacaagttctg 39 ||||| |||||||||||||||||||| Sbjct: 18875 gccaaagtggagaacaacaagttctg 18850
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 507 gcgacgaccgcaccgacgagga 528 |||||||||||||||||||||| Sbjct: 2161743 gcgacgaccgcaccgacgagga 2161764
>dbj|D86216.1| Thermus aquaticus DNA for trehalose synthase, complete cds Length = 4219 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 494 cccgtctacatcggcgacgaccgcaccgacgaggacgccttc 535 ||||| |||||||| |||||| ||||||||||| ||||||| Sbjct: 550 cccgtttacatcggggacgacaccaccgacgaggccgccttc 591
>emb|CR936241.17| Zebrafish DNA sequence from clone DKEY-18J18 in linkage group 18, complete sequence Length = 100610 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 gaacggaacacaacggaaatg 104 ||||||||||||||||||||| Sbjct: 19492 gaacggaacacaacggaaatg 19512
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgcctt 534 |||||||||||||||||| |||||||| || ||||| Sbjct: 174701 tctacatcggcgacgaccttaccgacgaagatgcctt 174737
>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14 Length = 306050 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 498 tctacatcggcgacgaccgcaccgacgaggacgcctt 534 |||||||||||||||||| |||||||| || ||||| Sbjct: 27320 tctacatcggcgacgaccttaccgacgaagatgcctt 27356
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 508 cgacgaccgcaccgacgaggacgcc 532 ||||| ||||||||||||||||||| Sbjct: 218199 cgacgcccgcaccgacgaggacgcc 218223
>emb|CR381598.5| Zebrafish DNA sequence from clone CH211-263K4 in linkage group 8, complete sequence Length = 146900 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 gaacggaacacaacggaaatg 104 ||||||||||||||||||||| Sbjct: 88141 gaacggaacacaacggaaatg 88121
>gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194979 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 515 cgcaccgacgaggacgccttcaagg 539 |||| |||||||||||||||||||| Sbjct: 180587 cgcagcgacgaggacgccttcaagg 180563
>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172540 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 515 cgcaccgacgaggacgccttcaagg 539 |||| |||||||||||||||||||| Sbjct: 75958 cgcagcgacgaggacgccttcaagg 75982
>ref|NM_140501.2| Drosophila melanogaster CG7011-RA (CG7011), mRNA Length = 1346 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 515 cgcaccgacgaggacgccttcaagg 539 |||| |||||||||||||||||||| Sbjct: 667 cgcagcgacgaggacgccttcaagg 691
>gb|AY060788.1| Drosophila melanogaster GH25868 full length cDNA Length = 1330 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 515 cgcaccgacgaggacgccttcaagg 539 |||| |||||||||||||||||||| Sbjct: 640 cgcagcgacgaggacgccttcaagg 664
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 acgaccgcaccgacgaggacg 530 ||||||||||||||||||||| Sbjct: 1488972 acgaccgcaccgacgaggacg 1488952
>emb|BX545854.10| Zebrafish DNA sequence from clone CH211-195N8 in linkage group 11, complete sequence Length = 190179 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 gaacggaacacaacggaaatg 104 ||||||||||||||||||||| Sbjct: 117803 gaacggaacacaacggaaatg 117783
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 499 ctacatcggcgacgaccgcaccgac 523 |||||||| |||||||||||||||| Sbjct: 783629 ctacatcgacgacgaccgcaccgac 783605
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 cgctggcggagacggtgaagg 350 ||||||||||||||||||||| Sbjct: 1693854 cgctggcggagacggtgaagg 1693834
>gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53 of 83 of the complete sequence Length = 295875 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 515 cgcaccgacgaggacgccttcaagg 539 |||| |||||||||||||||||||| Sbjct: 241140 cgcagcgacgaggacgccttcaagg 241116
>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence Length = 181038 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 taaaactaaacttccctttt 224 |||||||||||||||||||| Sbjct: 98751 taaaactaaacttccctttt 98732
>ref|XM_520525.1| PREDICTED: Pan troglodytes similar to FHA-HIT isoform (LOC465037), mRNA Length = 755 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 404 tcctttatcaccaccacctg 385
>gb|BC032650.1| Homo sapiens aprataxin, mRNA (cDNA clone IMAGE:5505120) Length = 1899 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 698 tcctttatcaccaccacctg 679
>gb|AF032884.1| Thiobacillus ferrooxidans N-acetylglucosamine-1-phosphate uridyltransferase (glmU) gene, partial cds; glucosamine synthase (glmS) and RecG (recG) genes, complete cds; and transposon Tn5468, complete sequence; and unknown gene Length = 13058 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 agctggggcgcgctggcgga 339 |||||||||||||||||||| Sbjct: 7920 agctggggcgcgctggcgga 7901
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 450 tcctgctcgagtcgctgggcttcg 473 |||||||||| ||||||||||||| Sbjct: 718865 tcctgctcgactcgctgggcttcg 718888
>gb|AY302070.1| Homo sapiens aprataxin variant LP2P3 (APTX) mRNA, complete cds Length = 2007 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 655 tcctttatcaccaccacctg 636
>gb|AY302069.1| Homo sapiens aprataxin variant LP3 (APTX) mRNA, complete cds Length = 2012 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 660 tcctttatcaccaccacctg 641
>gb|AY302068.1| Homo sapiens aprataxin variant LP2 (APTX) mRNA, complete cds Length = 2122 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 770 tcctttatcaccaccacctg 751
>gb|AY302067.1| Homo sapiens aprataxin (APTX) mRNA, complete cds Length = 2127 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 775 tcctttatcaccaccacctg 756
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 cggcgacgaccgcaccgacg 524 |||||||||||||||||||| Sbjct: 2017877 cggcgacgaccgcaccgacg 2017896
>gb|BC001628.1| Homo sapiens aprataxin, transcript variant 5, mRNA (cDNA clone IMAGE:3538192), complete cds Length = 1083 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 480 tcctttatcaccaccacctg 461
>gb|AC003083.2| Homo sapiens BAC clone CTB-60N22 from 7, complete sequence Length = 136823 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gaacacaacggaaatgggtg 108 |||||||||||||||||||| Sbjct: 112273 gaacacaacggaaatgggtg 112292
>gb|AY208831.1| Homo sapiens skin FHA-HIT isoform mRNA, complete cds; alternatively spliced Length = 1762 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 407 tcctttatcaccaccacctg 388
>gb|AY208842.1| Homo sapiens lymphoma FHA-HIT aberrant isoform mRNA, complete cds; alternatively spliced Length = 888 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 266 tcctttatcaccaccacctg 247
>gb|AY208841.1| Homo sapiens retinoblastoma FHA-HIT aberrant isoform mRNA, complete cds; alternatively spliced Length = 1818 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 466 tcctttatcaccaccacctg 447
>gb|AY208840.1| Homo sapiens muscle FHA-HIT aberrant isoform mRNA, complete cds; alternatively spliced Length = 1218 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 629 tcctttatcaccaccacctg 610
>gb|AY208839.1| Homo sapiens melanotic melanoma FHA-HIT aberrant isoform mRNA, complete cds; alternatively spliced Length = 2113 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 766 tcctttatcaccaccacctg 747
>gb|AY208838.1| Homo sapiens lung small cell carcinoma FHA-HIT aberrant isoform mRNA, complete cds; alternatively spliced Length = 1186 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 588 tcctttatcaccaccacctg 569
>gb|AY208837.1| Homo sapiens lung small cell carcinoma FHA-HIT aberrant isoform mRNA, complete cds; alternatively spliced Length = 1318 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 729 tcctttatcaccaccacctg 710
>gb|AY208836.1| Homo sapiens lung small cell carcinoma FHA-HIT aberrant isoform mRNA, complete cds; alternatively spliced Length = 1361 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 772 tcctttatcaccaccacctg 753
>gb|AY208835.1| Homo sapiens hypothalamus FHA-HIT isoform mRNA, complete cds; alternatively spliced Length = 1165 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 612 tcctttatcaccaccacctg 593
>gb|AY208834.1| Homo sapiens dendritic cells FHA-HIT isoform mRNA, complete cds; alternatively spliced Length = 1124 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 571 tcctttatcaccaccacctg 552
>gb|AY208833.1| Homo sapiens kidney FHA-HIT isoform 2 mRNA, complete cds; alternatively spliced Length = 1112 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 470 tcctttatcaccaccacctg 451
>gb|AY208832.1| Homo sapiens kidney FHA-HIT isoform 1 mRNA, complete cds; alternatively spliced Length = 1023 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 470 tcctttatcaccaccacctg 451
>gb|AY208830.1| Homo sapiens testis FHA-HIT short isoform mRNA, complete cds; alternatively spliced Length = 1081 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 495 tcctttatcaccaccacctg 476
>gb|AY208829.1| Homo sapiens FHA-HIT short isoform mRNA, complete cds; alternatively spliced Length = 1220 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 632 tcctttatcaccaccacctg 613
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 atgatgaattgatgatgtgc 309 |||||||||||||||||||| Sbjct: 1201944 atgatgaattgatgatgtgc 1201963
>gb|BC111163.1| Bos taurus aprataxin, mRNA (cDNA clone MGC:133769 IMAGE:8057024), complete cds Length = 1778 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 1093 tcctttatcaccaccacctg 1074
>emb|AL353717.13| Human DNA sequence from clone RP11-562M8 on chromosome 9 Contains a novel pseudogene, a argininosuccinate synthetase (ASS) (CTLN1) pseudogene, the APTX gene for aprataxin, a transcription elongation factor A (SII), 1 pseudogene (GTF2SP) (TCEA1P) and 2 CpG islands, complete sequence Length = 120533 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 103278 tcctttatcaccaccacctg 103297
>emb|AL158217.25| Human DNA sequence from clone RP4-650H14 on chromosome 1p36.23-36.33 Contains the 3' end of the ESPN gene for espin, the TNFRSF25 gene for tumor necrosis factor receptor superfamily member 25, the gene for a novel PH domain-containing protein and four CpG islands, complete sequence Length = 53983 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 541 gctgcggcggaggggccagggcgtcggg 568 ||||||||| |||||||||||| ||||| Sbjct: 5182 gctgcggcgcaggggccagggcctcggg 5155
>gb|AY040778.1| Bos taurus forkhead-associated domain histidine-triad like protein mRNA, complete cds Length = 1218 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 626 tcctttatcaccaccacctg 607
>gb|AY040777.1| Homo sapiens forkhead-associated domain histidine-triad like protein mRNA, complete cds Length = 1925 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 632 tcctttatcaccaccacctg 613
>gb|BC019394.1| Mus musculus, clone IMAGE:3587257, mRNA Length = 983 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 taaaactaaacttccctttt 224 |||||||||||||||||||| Sbjct: 304 taaaactaaacttccctttt 285
>emb|BX538161.1|HSM806366 Homo sapiens mRNA; cDNA DKFZp686L1965 (from clone DKFZp686L1965); complete cds Length = 1990 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 742 tcctttatcaccaccacctg 723
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 ggtgttcgaggtgcggccca 416 |||||||||||||||||||| Sbjct: 103554 ggtgttcgaggtgcggccca 103535
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 ggtgttcgaggtgcggccca 416 |||||||||||||||||||| Sbjct: 74520 ggtgttcgaggtgcggccca 74539
>emb|AJ575566.1|HSA575566 Homo sapiens partial mRNA for aprataxin (APTX gene), splice variant 7 Length = 682 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 518 tcctttatcaccaccacctg 499
>emb|AJ565855.1|HSA565855 Homo sapiens partial mRNA for aprataxin (APTX gene), splice variant 6 Length = 640 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 476 tcctttatcaccaccacctg 457
>emb|AJ565854.1|HSA565854 Homo sapiens partial mRNA for aprataxin (APTX gene), splice variant 5 Length = 802 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 638 tcctttatcaccaccacctg 619
>emb|AJ565853.1|HSA565853 Homo sapiens partial mRNA for aprataxin (APTX gene), splice variant 4 Length = 797 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 633 tcctttatcaccaccacctg 614
>emb|AJ565852.1|HSA565852 Homo sapiens partial mRNA for aprataxin (APTX gene), splice variant 3 Length = 794 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 630 tcctttatcaccaccacctg 611
>emb|AJ565851.1|HSA565851 Homo sapiens partial mRNA for aprataxin (APTX gene), splice variant 2 Length = 684 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 520 tcctttatcaccaccacctg 501
>emb|AJ565850.1|HSA565850 Homo sapiens partial mRNA for aprataxin (APTX gene), splice variant 1 Length = 679 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 515 tcctttatcaccaccacctg 496
>emb|AL669897.15| Mouse DNA sequence from clone RP23-78H4 on chromosome 11 Contains the Ywhae gene for tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon polypeptide, the Doc2b gene for double C2 beta, a novl gene, the 3' end of the gene for a novel protein similar to rat rabphilin-3a related protein and two CpG islands, complete sequence Length = 178980 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 aagggcaaggccctcgagttcctg 454 |||||||||||||||||| ||||| Sbjct: 77298 aagggcaaggccctcgagatcctg 77275
>gb|AF216667.4| Homo sapiens chromosome 8 clone CTC-543J1 map 8q24.3, complete sequence Length = 178780 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 agtgggacaagggcaaggcc 442 |||||||||||||||||||| Sbjct: 32074 agtgggacaagggcaaggcc 32055
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 538 ggtgctgcggcggaggggccaggg 561 ||||||||||| |||||||||||| Sbjct: 2162995 ggtgctgcggcagaggggccaggg 2162972
>ref|NM_017692.2| Homo sapiens aprataxin (APTX), transcript variant 4, mRNA Length = 2016 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 660 tcctttatcaccaccacctg 641
>emb|CR620499.1| full-length cDNA clone CS0DI054YB07 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1125 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 584 tcctttatcaccaccacctg 565
>ref|NM_175069.1| Homo sapiens aprataxin (APTX), transcript variant 2, mRNA Length = 2036 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 644 tcctttatcaccaccacctg 625
>ref|NM_175071.1| Homo sapiens aprataxin (APTX), transcript variant 5, mRNA Length = 1836 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 480 tcctttatcaccaccacctg 461
>ref|NM_175072.1| Homo sapiens aprataxin (APTX), transcript variant 3, mRNA Length = 2041 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 685 tcctttatcaccaccacctg 666
>ref|NM_175073.1| Homo sapiens aprataxin (APTX), transcript variant 1, mRNA Length = 2086 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 730 tcctttatcaccaccacctg 711
>emb|CR602856.1| full-length cDNA clone CS0DJ013YO21 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1313 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 771 tcctttatcaccaccacctg 752
>gb|AE011899.1| Xanthomonas axonopodis pv. citri str. 306, section 277 of 469 of the complete genome Length = 9687 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 501 acatcggcgacgaccgcaccgacg 524 |||||||||||||||||| ||||| Sbjct: 1136 acatcggcgacgaccgcatcgacg 1159
>dbj|AK055672.1| Homo sapiens cDNA FLJ31110 fis, clone IMR322000223, weakly similar to HINT PROTEIN Length = 2012 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 644 tcctttatcaccaccacctg 625
>emb|CR592504.1| full-length cDNA clone CS0DE001YL19 of Placenta of Homo sapiens (human) Length = 1801 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 469 tcctttatcaccaccacctg 450
>ref|XM_689301.1| PREDICTED: Danio rerio similar to myosin VIIA (LOC566034), partial mRNA Length = 5341 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 atgaattgatgatgtgcttt 312 |||||||||||||||||||| Sbjct: 5212 atgaattgatgatgtgcttt 5193
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 593 gacaccagcgcatccttctc 612 |||||||||||||||||||| Sbjct: 1953534 gacaccagcgcatccttctc 1953553
>ref|NM_182654.1| Bos taurus aprataxin (APTX), mRNA Length = 1190 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 626 tcctttatcaccaccacctg 607
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 cgagtcgctgggcttcgccg 476 |||||||||||||||||||| Sbjct: 7968449 cgagtcgctgggcttcgccg 7968468
>gb|AC018540.13| Homo sapiens chromosome 8, clone RP11-399G1, complete sequence Length = 179614 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 agtgggacaagggcaaggcc 442 |||||||||||||||||||| Sbjct: 21844 agtgggacaagggcaaggcc 21863
>gb|BC040083.1| Mus musculus, clone IMAGE:3587257, mRNA Length = 984 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 taaaactaaacttccctttt 224 |||||||||||||||||||| Sbjct: 304 taaaactaaacttccctttt 285
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 gcaccgacgaggacgccttc 535 |||||||||||||||||||| Sbjct: 782692 gcaccgacgaggacgccttc 782673
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 505 cggcgacgaccgcaccgacgagga 528 ||||||||||| |||||||||||| Sbjct: 4169474 cggcgacgacctcaccgacgagga 4169497
>dbj|AK000164.1| Homo sapiens cDNA FLJ20157 fis, clone COL08833 Length = 2012 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 660 tcctttatcaccaccacctg 641
>dbj|AK131046.1| Homo sapiens cDNA FLJ29012 fis, clone DMC08206 Length = 1944 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 609 tcctttatcaccaccacctg 590
>ref|XM_316174.2| Anopheles gambiae str. PEST ENSANGP00000005913 (ENSANGG00000004501), partial mRNA Length = 2649 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 cgaccgcaccgacgaggacg 530 |||||||||||||||||||| Sbjct: 607 cgaccgcaccgacgaggacg 588
>ref|XM_556808.1| Anopheles gambiae str. PEST ENSANGP00000026467 (ENSANGG00000004501), partial mRNA Length = 3579 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 cgaccgcaccgacgaggacg 530 |||||||||||||||||||| Sbjct: 1126 cgaccgcaccgacgaggacg 1107
>ref|XM_308789.2| Anopheles gambiae str. PEST ENSANGP00000014972 (ENSANGG00000012483), partial mRNA Length = 2430 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 cgaccgcaccgacgaggacg 530 |||||||||||||||||||| Sbjct: 517 cgaccgcaccgacgaggacg 498
>emb|CR354399.24| Zebrafish DNA sequence from clone CH211-233B23 in linkage group 8, complete sequence Length = 164386 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 aacggaacacaacggaaatg 104 |||||||||||||||||||| Sbjct: 61353 aacggaacacaacggaaatg 61334
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 catcggcgacgaccgcaccg 521 |||||||||||||||||||| Sbjct: 1701583 catcggcgacgaccgcaccg 1701564
>gb|BC104881.1| Homo sapiens aprataxin, transcript variant 1, mRNA (cDNA clone MGC:132541 IMAGE:8143884), complete cds Length = 1455 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 671 tcctttatcaccaccacctg 652
>gb|AY111952.1| Zea mays CL5438_1 mRNA sequence Length = 1008 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 atgatgaattgatgatgtgc 309 |||||||||||||||||||| Sbjct: 966 atgatgaattgatgatgtgc 985
>gb|BT020761.1| Bos taurus aprataxin (APTX), mRNA, complete cds Length = 1703 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 1128 tcctttatcaccaccacctg 1109
>gb|BC068107.1| Homo sapiens aprataxin, transcript variant 1, mRNA (cDNA clone IMAGE:6384129) Length = 1324 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tcctttatcaccaccacctg 170 |||||||||||||||||||| Sbjct: 738 tcctttatcaccaccacctg 719
>emb|AL731771.8| Mouse DNA sequence from clone RP23-111L20 on chromosome X, complete sequence Length = 211183 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 203 tataaaactaaacttcccttttgt 226 |||||||||||| ||||||||||| Sbjct: 46155 tataaaactaaatttcccttttgt 46178 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,978,633 Number of Sequences: 3902068 Number of extensions: 3978633 Number of successful extensions: 74706 Number of sequences better than 10.0: 153 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72596 Number of HSP's gapped (non-prelim): 2100 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
