>NOL10_MOUSE (Q5RJG1) Nucleolar protein 10|
          Length = 687

 Score = 33.5 bits (75), Expect = 0.53
 Identities = 41/190 (21%), Positives = 89/190 (46%), Gaps = 19/190 (10%)
 Frame = +2

Query: 59  DTKPPETITDEERFMFRKLGLRMKAFLLLGR---RGVFDGTIENMHLHWKYRELVKILVK 229
           +  P  T+ D+ +F+ +K    +    L+G    R    G   ++ L+ K    VK++V 
Sbjct: 362 EENPESTVYDDYKFVTKKDLENLGLTHLIGSPFLRAYMHGFFMDIRLYHK----VKLMVN 417

Query: 230 AKSFADVKRTALSLEVESGGV----LVSVDKVSKGYAIVVFRGKDYKRPSMLRPR----- 382
             ++ + ++  +  ++E        L  + KV+K  A+ +   ++ K+ S L+ +     
Sbjct: 418 PFAYEEYRKDKIRQKIEETRAQRVQLKKLPKVNKELALKLIEEEEEKQKSTLKKKVKSLP 477

Query: 383 NLLS--KRKALARSIELQRMEALG--RHIEKLNRRVNQLRSE---LVQMEDVKDQGDEEL 541
           N+L+  + K +  + + Q  E     R +  L  R+++ R +   L++ +++KD+ +EE 
Sbjct: 478 NILTDDRFKVMFENPDFQVDEESEEFRLLNPLVSRISEKRKKQLRLLEQQELKDEEEEEP 537

Query: 542 YAKLDSAYSS 571
             K   A SS
Sbjct: 538 EGKPSDAESS 547

>RELA_VIBSS (P55133) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP|
           3'-pyrophosphotransferase) (ppGpp synthetase I)
           ((P)ppGpp synthetase)
          Length = 744

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
 Frame = +2

Query: 188 LHWKYRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGYA-IVVFRGKDYKRP 364
           L W+ RELV+ILV     AD    AL   +  GG   S D + + Y+  ++   +  ++ 
Sbjct: 54  LLWRGRELVEILVTLSMDADTLIAALLYPLVEGG-CYSTDALKEEYSGTILHLVQGVEQM 112

Query: 365 SMLRPRNLLSKRKALARSIELQRMEALGRHIEKLNRRVNQLRSELVQMEDVKDQGDE 535
             +      ++  A A  ++  R   L   ++     V +L   +  + +VKDQ DE
Sbjct: 113 CAISQLKSTAEETAQAAQVDNIRRMLLSM-VDDFRCVVIKLAERICNLREVKDQPDE 168

>DSCAM_HUMAN (O60469) Down syndrome cell adhesion molecule precursor (CHD2)|
          Length = 2012

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 299  SVDKVSKGYAIVVFRGKDYKRPSMLRPRNLLSKRKALARSIELQRMEALGRH 454
            SVDK S  Y++   +  D  R SM+   +  S  + LAR+ E  +ME   RH
Sbjct: 1778 SVDKESDSYSVSPSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRH 1829

>NUCB1_RAT (Q63083) Nucleobindin-1 precursor (CALNUC) (Bone 63 kDa|
           calcium-binding protein)
          Length = 459

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 428 QRMEALGRHIEKLNRRVNQLRSELVQMEDVKDQGDEE 538
           Q  EALGR  ++L  +  +L+  ++QME  K Q  E+
Sbjct: 369 QETEALGRSQDRLEAQKRELQQAVLQMEQRKQQQQEQ 405

>Y108_SSV1 (P20221) Hypothetical 10.8 kDa protein (ORF F-92)|
          Length = 92

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 395 KRKALARSIELQRMEALGRHIEKLNRRVNQLRSELVQMEDVKDQGDE 535
           ++K   R  EL+++E L + +EK+   +  +R   + + D+K + DE
Sbjct: 32  EKKLEERLKELEKLEELEKELEKIENELRLMRGVPLDLTDIKGKLDE 78

>DPOLA_RAT (O89042) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
           (Fragment)
          Length = 1451

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +2

Query: 347 KDYKRPSMLRPRNLLSK------RKALARSIELQRMEALGRHIEKLNRRVNQL 487
           KD K+PS+ +P N+ +       +K   ++++L + + LG  ++ LN    Q+
Sbjct: 127 KDVKKPSVTKPNNIKAMFIASAGKKTTDKTVDLSKDDLLGDILQDLNTETPQI 179

>DPOLA_MOUSE (P33609) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)|
          Length = 1465

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +2

Query: 347 KDYKRPSMLRPRNLLSK------RKALARSIELQRMEALGRHIEKLNRRVNQL 487
           KD K+PS+ +P N+ +       +K   ++++L + + LG  ++ LN    Q+
Sbjct: 127 KDVKKPSVTKPNNIKAMFIASAGKKTTDKAVDLSKDDLLGDILQDLNTETAQI 179

>CLPB_HAEDU (Q7VNH1) Chaperone clpB|
          Length = 856

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 455 IEKLNRRVNQLRSELVQMEDVKDQGDEELYAKLD 556
           ++KL RR+ QL+ E   ++  KD+   +  AKLD
Sbjct: 410 LDKLERRIIQLKLERQALQKEKDEASRQRLAKLD 443

>Y436_SYNY3 (Q55121) Hypothetical protein slr0436|
          Length = 297

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 221 LVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGYAIVVFRGK 349
           LV  +SF  +  TA  +   S   LV  +K+  GY   V RGK
Sbjct: 35  LVSTRSFPAIVGTADMMLKSSQVTLVGYEKIGSGYCTAVVRGK 77

>LAP1_DROME (Q9V780) Protein lap1|
          Length = 849

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 371 LRPRNLLSKRKALARSIELQRMEALGRHIEKLNRRVNQLRS 493
           LR  NL++  K++ R I LQR++  G    +L   V +L+S
Sbjct: 162 LRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVVGELKS 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,080,677
Number of Sequences: 219361
Number of extensions: 1602504
Number of successful extensions: 4810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4809
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)