ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags13g21 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RL5_ARATH (P49227) 60S ribosomal protein L5 | 35 | 0.061 | 2 | RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2 | 35 | 0.061 | 3 | RL5A_ORYSA (P49625) 60S ribosomal protein L5-1 | 35 | 0.061 | 4 | RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5 | 35 | 0.061 | 5 | RL5_DUNSA (O22608) 60S ribosomal protein L5 | 32 | 0.39 | 6 | RL5_STYCL (Q26481) 60S ribosomal protein L5 | 30 | 2.6 | 7 | RL5_RAT (P09895) 60S ribosomal protein L5 | 29 | 4.4 | 8 | RL5_MOUSE (P47962) 60S ribosomal protein L5 | 29 | 4.4 | 9 | RL5_MACFA (Q4R5M0) 60S ribosomal protein L5 | 29 | 4.4 | 10 | RL5_HUMAN (P46777) 60S ribosomal protein L5 | 29 | 4.4 | 11 | RL5_CHICK (P22451) 60S ribosomal protein L5 | 29 | 4.4 | 12 | RL5B_XENLA (P15126) 60S ribosomal protein L5-B | 29 | 4.4 | 13 | RL5A_XENLA (P15125) 60S ribosomal protein L5-A | 29 | 4.4 | 14 | RL18_METMP (Q6LXD4) 50S ribosomal protein L18P | 28 | 5.7 | 15 | RL5_BOMMO (O76190) 60S ribosomal protein L5 | 28 | 9.7 | 16 | RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosoma... | 28 | 9.7 | 17 | RL5_ANOGA (O44248) 60S ribosomal protein L5 | 28 | 9.7 |
|---|
>RL5_ARATH (P49227) 60S ribosomal protein L5| Length = 301 Score = 35.0 bits (79), Expect = 0.061 Identities = 15/18 (83%), Positives = 15/18 (83%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGALDGGLD PH D R Sbjct: 161 ALKGALDGGLDIPHSDKR 178
>RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2| Length = 304 Score = 35.0 bits (79), Expect = 0.061 Identities = 15/18 (83%), Positives = 15/18 (83%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGALDGGLD PH D R Sbjct: 162 ALKGALDGGLDIPHSDKR 179
>RL5A_ORYSA (P49625) 60S ribosomal protein L5-1| Length = 304 Score = 35.0 bits (79), Expect = 0.061 Identities = 15/18 (83%), Positives = 15/18 (83%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGALDGGLD PH D R Sbjct: 162 ALKGALDGGLDIPHSDKR 179
>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5| Length = 302 Score = 35.0 bits (79), Expect = 0.061 Identities = 15/18 (83%), Positives = 15/18 (83%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGALDGGLD PH D R Sbjct: 161 ALKGALDGGLDIPHSDKR 178
>RL5_DUNSA (O22608) 60S ribosomal protein L5| Length = 271 Score = 32.3 bits (72), Expect = 0.39 Identities = 13/18 (72%), Positives = 15/18 (83%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 A+KGALDGGLD PH + R Sbjct: 162 AMKGALDGGLDIPHNEKR 179
>RL5_STYCL (Q26481) 60S ribosomal protein L5| Length = 294 Score = 29.6 bits (65), Expect = 2.6 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 A+KGA DGGLD PH R Sbjct: 161 AMKGAADGGLDIPHSTKR 178
>RL5_RAT (P09895) 60S ribosomal protein L5| Length = 296 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGA+DGGL PH R Sbjct: 161 ALKGAVDGGLSIPHSTKR 178
>RL5_MOUSE (P47962) 60S ribosomal protein L5| Length = 296 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGA+DGGL PH R Sbjct: 161 ALKGAVDGGLSIPHSTKR 178
>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5| Length = 296 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGA+DGGL PH R Sbjct: 161 ALKGAVDGGLSIPHSTKR 178
>RL5_HUMAN (P46777) 60S ribosomal protein L5| Length = 296 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGA+DGGL PH R Sbjct: 161 ALKGAVDGGLSIPHSTKR 178
>RL5_CHICK (P22451) 60S ribosomal protein L5| Length = 296 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGA+DGGL PH R Sbjct: 161 ALKGAVDGGLSIPHSTKR 178
>RL5B_XENLA (P15126) 60S ribosomal protein L5-B| Length = 295 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGA+DGGL PH R Sbjct: 161 ALKGAVDGGLSIPHSTKR 178
>RL5A_XENLA (P15125) 60S ribosomal protein L5-A| Length = 295 Score = 28.9 bits (63), Expect = 4.4 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGA+DGGL PH R Sbjct: 161 ALKGAVDGGLSIPHSTKR 178
>RL18_METMP (Q6LXD4) 50S ribosomal protein L18P| Length = 193 Score = 28.5 bits (62), Expect = 5.7 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 4 LKGALDGGLDXPHXD 48 LKGALD G+D PH D Sbjct: 120 LKGALDAGMDIPHGD 134
>RL5_BOMMO (O76190) 60S ribosomal protein L5| Length = 299 Score = 27.7 bits (60), Expect = 9.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 A+KGA+DGGL+ PH R Sbjct: 162 AMKGAVDGGLNVPHSIKR 179
>RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S| RNA-binding protein) Length = 296 Score = 27.7 bits (60), Expect = 9.7 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 ALKGA DGGL PH + R Sbjct: 161 ALKGASDGGLYVPHSENR 178
>RL5_ANOGA (O44248) 60S ribosomal protein L5| Length = 327 Score = 27.7 bits (60), Expect = 9.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +1 Query: 1 ALKGALDGGLDXPHXDXR 54 A+KGA+DGGL+ PH R Sbjct: 162 AMKGAVDGGLNIPHSVKR 179 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.148 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,213,709 Number of Sequences: 219361 Number of extensions: 17403 Number of successful extensions: 52 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 52 length of database: 80,573,946 effective HSP length: 0 effective length of database: 80,573,946 effective search space used: 1933774704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
