| Clone Name | rbaal9j03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, partial cds Length = 956 Score = 276 bits (139), Expect = 3e-71 Identities = 193/214 (90%), Gaps = 1/214 (0%) Strand = Plus / Minus Query: 22 agagtagcacacgcgccttgttgcattatnttanaccaccaccacctacacacgaccggn 81 ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| Sbjct: 808 agagtagcacacgcgccttgttgcattatattacaccaccaccatctacacacgaacggc 749 Query: 82 gttgcctgctttgcccagcgacggnnacgagagaanntnctactgaagtgccgnnagaac 141 |||||||||||||||||||||| | ||| ||||| | |||||||||||||| | ||| Sbjct: 748 gttgcctgctttgcccagcgacagagacgggagaatctcctactgaagtgccgcgacaac 689 Query: 142 ggtngatccttccaccatgaaggttgcaccacagatttcctcctcatntgcaggcacagc 201 ||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| Sbjct: 688 ggtagatccttccaccatgaagg-tgcaccacatatttcctcctcatctgcaggcacagc 630 Query: 202 ggtcaccttgttcttgggattctcgtacnacttg 235 ||| |||||||||||||||||||||||| ||||| Sbjct: 629 ggtgaccttgttcttgggattctcgtacgacttg 596
>gb|AY106409.1| Zea mays PCO130569 mRNA sequence Length = 1186 Score = 81.8 bits (41), Expect = 9e-13 Identities = 70/80 (87%) Strand = Plus / Minus Query: 149 ccttccaccatgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcacc 208 ||||||||| ||||||||| || |||||||||||||| | |||||| || || ||||| Sbjct: 768 ccttccacctggaaggttgcgccgcagatttcctcctcgtttgcaggaacggcagtcact 709 Query: 209 ttgttcttgggattctcgta 228 |||||||||||||||||||| Sbjct: 708 ttgttcttgggattctcgta 689
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 71.9 bits (36), Expect = 9e-10 Identities = 59/67 (88%) Strand = Plus / Plus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 2187475 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 2187534 Query: 219 gattctc 225 | ||||| Sbjct: 2187535 ggttctc 2187541
>dbj|AK119185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G04, full insert sequence Length = 1135 Score = 71.9 bits (36), Expect = 9e-10 Identities = 59/67 (88%) Strand = Plus / Minus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 887 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 828 Query: 219 gattctc 225 | ||||| Sbjct: 827 ggttctc 821
>dbj|AK104445.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B05, full insert sequence Length = 1124 Score = 71.9 bits (36), Expect = 9e-10 Identities = 59/67 (88%) Strand = Plus / Minus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 887 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 828 Query: 219 gattctc 225 | ||||| Sbjct: 827 ggttctc 821
>dbj|AK071762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109H06, full insert sequence Length = 1136 Score = 71.9 bits (36), Expect = 9e-10 Identities = 59/67 (88%) Strand = Plus / Minus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 888 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 829 Query: 219 gattctc 225 | ||||| Sbjct: 828 ggttctc 822
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 71.9 bits (36), Expect = 9e-10 Identities = 59/67 (88%) Strand = Plus / Plus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 2195256 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 2195315 Query: 219 gattctc 225 | ||||| Sbjct: 2195316 ggttctc 2195322
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125593 Score = 71.9 bits (36), Expect = 9e-10 Identities = 59/67 (88%) Strand = Plus / Plus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||||||||| || || |||| |||||| ||||| |||||||||||||| | Sbjct: 84169 tgaaggttgcaccacagatctcttcttcatttgcaggaacagcagtcaccttgttctttg 84228 Query: 219 gattctc 225 | ||||| Sbjct: 84229 ggttctc 84235
>gb|BT016691.1| Zea mays clone Contig524 mRNA sequence Length = 1198 Score = 67.9 bits (34), Expect = 1e-08 Identities = 69/81 (85%) Strand = Plus / Plus Query: 148 tccttccaccatgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcac 207 |||||||||| ||||| ||| || || ||||||||||| | |||||| || || ||||| Sbjct: 424 tccttccacctggaagggtgcgccgcaaatttcctcctcgtttgcaggaacggcagtcac 483 Query: 208 cttgttcttgggattctcgta 228 |||||||||||||||||||| Sbjct: 484 tttgttcttgggattctcgta 504
>dbj|AK104347.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F10, full insert sequence Length = 1101 Score = 58.0 bits (29), Expect = 1e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 146 gatccttccaccatgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtc 205 |||||||||||| ||||||||||||| || ||||| || || | ||||| || |||||| Sbjct: 854 gatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcggtc 795 Query: 206 accttgttcttgggattctc 225 ||||||| ||| || ||||| Sbjct: 794 accttgtgctttgggttctc 775
>dbj|AK104102.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B06, full insert sequence Length = 1099 Score = 58.0 bits (29), Expect = 1e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 146 gatccttccaccatgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtc 205 |||||||||||| ||||||||||||| || ||||| || || | ||||| || |||||| Sbjct: 866 gatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcggtc 807 Query: 206 accttgttcttgggattctc 225 ||||||| ||| || ||||| Sbjct: 806 accttgtgctttgggttctc 787
>dbj|AK067141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095J21, full insert sequence Length = 1130 Score = 58.0 bits (29), Expect = 1e-05 Identities = 67/80 (83%) Strand = Plus / Minus Query: 146 gatccttccaccatgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtc 205 |||||||||||| ||||||||||||| || ||||| || || | ||||| || |||||| Sbjct: 867 gatccttccaccttgaaggttgcaccgcaaatttcttcttctttggcaggaactgcggtc 808 Query: 206 accttgttcttgggattctc 225 ||||||| ||| || ||||| Sbjct: 807 accttgtgctttgggttctc 788
>gb|DQ107223.1| Astragalus brandegei clone 5 aluminum-induced protein-like gene, partial sequence Length = 327 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 160 aaggttgcgccccagatttcctcatcattagcaggcacagc 200
>gb|DQ107222.1| Astragalus brandegei clone 6 aluminum-induced protein-like gene, partial sequence Length = 320 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 152 aaggttgcgccccagatttcctcatcattagcaggcacagc 192
>gb|DQ107191.1| Astragalus falcatus clone 3 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107190.1| Astragalus falcatus clone 2 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107189.1| Astragalus falcatus clone 12 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107188.1| Astragalus falcatus clone 11 aluminum-induced protein-like gene, partial sequence Length = 332 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107187.1| Astragalus falcatus clone 10 aluminum-induced protein-like gene, partial sequence Length = 331 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 167 aaggttgcgccccagatttcctcatcattagcaggcacagc 207
>gb|DQ107178.1| Astragalus lonchocarpus clone 19 aluminum-induced protein-like gene, partial sequence Length = 338 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107177.1| Astragalus lonchocarpus clone 24 aluminum-induced protein-like gene, partial sequence Length = 335 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107176.1| Astragalus ceramicus clone 6 aluminum-induced protein-like gene, partial sequence Length = 334 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107175.1| Astragalus ceramicus clone 3 aluminum-induced protein-like gene, partial sequence Length = 334 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107174.1| Astragalus ceramicus clone 2 aluminum-induced protein-like gene, partial sequence Length = 335 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107171.1| Astragalus tetrapterus clone 21 aluminum-induced protein-like gene, partial sequence Length = 336 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>gb|DQ107170.1| Astragalus tetrapterus clone 20 aluminum-induced protein-like gene, partial sequence Length = 337 Score = 44.1 bits (22), Expect = 0.19 Identities = 36/41 (87%) Strand = Plus / Plus Query: 161 aaggttgcaccacagatttcctcctcatntgcaggcacagc 201 |||||||| || ||||||||||| |||| ||||||||||| Sbjct: 172 aaggttgcgccccagatttcctcatcattagcaggcacagc 212
>dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27F14, TM0387, complete sequence Length = 96031 Score = 44.1 bits (22), Expect = 0.19 Identities = 28/30 (93%) Strand = Plus / Plus Query: 159 tgaaggttgcaccacagatttcctcctcat 188 ||||||||||||| ||||||||||| |||| Sbjct: 41219 tgaaggttgcaccccagatttcctcttcat 41248
>emb|Z99976.1|MAZ99976 Musa acuminata mRNA for putative WALI7-related protein (clone pBAN ED141) Length = 750 Score = 42.1 bits (21), Expect = 0.76 Identities = 65/80 (81%) Strand = Plus / Plus Query: 149 ccttccaccatgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcacc 208 ||||||||| |||| || |||||||| | ||| ||||| | | || | || ||||| ||| Sbjct: 343 ccttccaccttgaaagtggcaccacatacttcttcctcgttttcaagaacggcggtgacc 402 Query: 209 ttgttcttgggattctcgta 228 |||| ||| ||||||||||| Sbjct: 403 ttgtgcttaggattctcgta 422
>dbj|AB012110.1| Vigna radiata mRNA for ARG10, complete cds Length = 959 Score = 42.1 bits (21), Expect = 0.76 Identities = 65/80 (81%) Strand = Plus / Minus Query: 146 gatccttccaccatgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtc 205 ||||| |||||| | || |||||||| ||||||||||| || | ||||| || || || Sbjct: 726 gatccctccaccttaaaagttgcaccccagatttcctcttcttcggcaggtactgcagta 667 Query: 206 accttgttcttgggattctc 225 | ||||||||| |||||||| Sbjct: 666 atcttgttctttggattctc 647
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.0 Identities = 55/67 (82%) Strand = Plus / Plus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||| || ||||| || || | ||||| || ||||||||||||| ||| | Sbjct: 2215526 tgaaggttgcaccgcaaatttcttcttctttggcaggaactgcggtcaccttgtgctttg 2215585 Query: 219 gattctc 225 | ||||| Sbjct: 2215586 ggttctc 2215592
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.0 Identities = 55/67 (82%) Strand = Plus / Plus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||| || ||||| || || | ||||| || ||||||||||||| ||| | Sbjct: 2215470 tgaaggttgcaccgcaaatttcttcttctttggcaggaactgcggtcaccttgtgctttg 2215529 Query: 219 gattctc 225 | ||||| Sbjct: 2215530 ggttctc 2215536
>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132703 Score = 40.1 bits (20), Expect = 3.0 Identities = 55/67 (82%) Strand = Plus / Plus Query: 159 tgaaggttgcaccacagatttcctcctcatntgcaggcacagcggtcaccttgttcttgg 218 ||||||||||||| || ||||| || || | ||||| || ||||||||||||| ||| | Sbjct: 97750 tgaaggttgcaccgcaaatttcttcttctttggcaggaactgcggtcaccttgtgctttg 97809 Query: 219 gattctc 225 | ||||| Sbjct: 97810 ggttctc 97816
>dbj|AP004960.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19B18, TM0139, complete sequence Length = 106089 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 159 tgaaggttgcaccacagatttcctcctc 186 ||||||||||||| || ||||||||||| Sbjct: 71058 tgaaggttgcaccccaaatttcctcctc 71031 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,404,734 Number of Sequences: 3902068 Number of extensions: 1404734 Number of successful extensions: 18998 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 18948 Number of HSP's gapped (non-prelim): 50 length of query: 235 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 213 effective length of database: 17,147,199,772 effective search space: 3652353551436 effective search space used: 3652353551436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)