Clone Information

BLAST Search Result

Clone Name	bags13f11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK060492.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	488	e-134
2	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	198	2e-47
3	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	198	2e-47
4	emb\|AL732640.4\|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa...	198	2e-47
5	gb\|AY105740.1\| Zea mays PCO079161 mRNA sequence	184	3e-43
6	gb\|AC108097.3\| Homo sapiens chromosome 16 clone RP11-109P11, com...	44	0.59
7	gb\|AC159909.8\| Mus musculus 10 BAC RP23-312M21 (Roswell Park Can...	44	0.59
8	gb\|AC092332.4\| Homo sapiens chromosome 16 clone RP11-18F14, comp...	44	0.59
9	gb\|AC153944.3\| Mus musculus 10 BAC RP24-292A13 (Roswell Park Can...	44	0.59
10	gb\|AC159290.2\| Mus musculus BAC clone RP23-291I2 from chromosome...	42	2.3
11	gb\|AC156572.3\| Mus musculus BAC clone RP23-216C6 from chromosome...	42	2.3
12	ref\|XM_423852.1\| PREDICTED: Gallus gallus similar to achalasia, ...	42	2.3
13	ref\|XM_981226.1\| PREDICTED: Mus musculus similar to zinc finger ...	42	2.3
14	ref\|XM_904598.2\| PREDICTED: Mus musculus similar to zinc finger ...	42	2.3
15	ref\|XM_914551.2\| PREDICTED: Mus musculus similar to Zinc finger ...	42	2.3
16	gb\|BC058422.1\| Mus musculus cDNA clone IMAGE:5689029, partial cds	42	2.3
17	emb\|CR390825.1\| Gallus gallus finished cDNA, clone ChEST968j9	42	2.3
18	gb\|AC090054.2\|AC090054 Oryza sativa chromosome 9 clone PAC0645D0...	42	2.3
19	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
20	dbj\|AP006528.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
21	dbj\|AP006727.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
22	emb\|CT030172.10\| Mouse DNA sequence from clone RP23-313L22 on ch...	42	2.3
23	gb\|AC002366.1\|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Re...	42	2.3
24	emb\|CT030185.11\| Mouse DNA sequence from clone RP23-204L16 on ch...	42	2.3
25	gb\|AC166156.4\| Mus musculus BAC clone RP24-274H19 from chromosom...	40	9.3
26	gb\|AC122283.3\| Mus musculus BAC clone RP23-242G6 from chromosome...	40	9.3
27	gb\|AC164958.3\| Mus musculus BAC clone RP23-359G24 from chromosom...	40	9.3
28	ref\|XM_823900.1\| Trypanosoma brucei TREU927 hypothetical protein...	40	9.3
29	gb\|AC126028.4\| Mus musculus BAC clone RP24-542M6 from chromosome...	40	9.3
30	gb\|AC114006.3\| Mus musculus BAC clone RP23-185F9 from 17, comple...	40	9.3
31	gb\|AC109169.13\| Mus musculus chromosome 6, clone RP23-5D6, compl...	40	9.3
32	emb\|AL645907.9\| Mouse DNA sequence from clone RP23-9N7 on chromo...	40	9.3
33	dbj\|AK028979.1\| Mus musculus 10 days neonate skin cDNA, RIKEN fu...	40	9.3
34	gb\|AC152417.3\| Mus musculus BAC clone RP23-56I21 from chromosome...	40	9.3
35	gb\|AF120996.1\|AF120996 Mus musculus domesticus methyl-CpG bindin...	40	9.3
36	gb\|AC117614.12\| Mus musculus chromosome 5, clone RP23-110C17, co...	40	9.3
37	emb\|AL928823.11\| Mouse DNA sequence from clone RP23-472P9 on chr...	40	9.3
38	gb\|AC005305.1\|AC005305 Homo sapiens chromosome 19, cosmid R34275...	40	9.3
39	emb\|BX649219.2\|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F...	40	9.3
40	gb\|AC133083.3\| Mus musculus BAC clone RP24-342G5 from 12, comple...	40	9.3
41	gb\|AC142099.3\| Mus musculus BAC clone RP24-350H4 from 6, complet...	40	9.3
42	gb\|AC132135.3\| Mus musculus BAC clone RP23-268C21 from 10, compl...	40	9.3
43	gb\|AC134604.5\| Mus musculus BAC clone RP23-296I5 from 12, comple...	40	9.3
44	gb\|AC144632.4\| Mus musculus BAC clone RP23-106G16 from chromosom...	40	9.3
45	emb\|AL772292.10\| Mouse DNA sequence from clone RP23-109C16 on ch...	40	9.3

>dbj|AK060492.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-C10, full
           insert sequence
          Length = 1723

 Score =  488 bits (246), Expect = e-134
 Identities = 567/674 (84%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggttgtaccaacttggttgagattggactaagcaaatgcaacggtgttacagatgaaggc 64
           |||||||  |||||||| |||||||| || ||||||||||| || |||||||||||||| 
Sbjct: 157 ggttgtaataacttggtcgagattggccttagcaaatgcaatggcgttacagatgaagga 216

                                                                       
Query: 65  atctcttcgcttgtagctcgctgtagctacctaaggaaaattgatctcacatgctgcaat 124
           |||||||| |||||| |||  || ||| || |||||   ||||||||||||||||| || 
Sbjct: 217 atctcttcacttgtaactcaatgcagccacttaagggttattgatctcacatgctgtaac 276

                                                                       
Query: 125 ctagtcacaaacgattcccttgattcaatagctgacaactgtaagatgcttgaatgcctc 184
           ||  | || ||| || ||||||||||||||||||| |||||||||||| |||||   |||
Sbjct: 277 ctccttaccaacaatgcccttgattcaatagctgagaactgtaagatggttgaacatctc 336

                                                                       
Query: 185 cggttggagtcctgctcttctataaacgagaaaggactagagagaattgcaagctgttgc 244
           || ||||| ||||| ||||| |||| ||| || ||||| |||   ||||||| ||  |||
Sbjct: 337 cgtttggaatcctgttcttccataagcgaaaagggactggagcagattgcaacctcctgc 396

                                                                       
Query: 245 cccaatctaaaggagatagatctcactgattgtggagtgaacgacgaagcgttgcatcat 304
           |||||||||||||||||||| |||||||| ||||||||||| || | ||| ||||| || 
Sbjct: 397 cccaatctaaaggagatagacctcactgactgtggagtgaatgatgcagcattgcagcac 456

                                                                       
Query: 305 ttggcgaagtgctctgaactgctgatattgaaattaggcctgagctcaagtatttcggac 364
           ||||| |||||||||||||||||  || |||||||||||||| ||||||||||||| |||
Sbjct: 457 ttggccaagtgctctgaactgcttgtactgaaattaggcctgtgctcaagtatttctgac 516

                                                                       
Query: 365 aaaggccttggttttattagttcaaagtgtgggaagctcattgaacttgacctctatcgc 424
           ||||| |||| |||||| |||||||  ||||| ||||| ||||| ||||| |||||||||
Sbjct: 517 aaaggtcttgcttttatcagttcaagctgtggaaagctgattgagcttgatctctatcgc 576

                                                                       
Query: 425 tgcagttctatcactgatgatgggctggcagccttagccaacggctgcaagaaaattaag 484
           |||| |||||| || ||||||||||||||||| ||||| || ||||||||||| ||||||
Sbjct: 577 tgcaattctattaccgatgatgggctggcagctttagctaatggctgcaagaagattaag 636

                                                                       
Query: 485 ctgctgaacctttgttactgcaacaagataactgatagtggtttgagccacctgggcgct 544
            |||| ||||| || |||||||||||||| || || ||||||||| ||||||| ||| ||
Sbjct: 637 atgctaaacctatgctactgcaacaagattaccgacagtggtttgggccacctaggctct 696

                                                                       
Query: 545 cttgaggagctcacaaaccttgagctgaggtgcctcgttcgcattacaggcatcggaatt 604
           || |||||||||||||||||||| ||||||||| | || || || ||||| || ||||| 
Sbjct: 697 ctagaggagctcacaaaccttgaactgaggtgcttggtccgtataacaggtattggaatc 756

                                                                       
Query: 605 tcttccgttgtcattggctgtaagagcctggtagaacttgacttgaagcgctgctattct 664
           || || |||| ||| ||||| |||| |||| ||||  | ||||||||||| |||||||||
Sbjct: 757 tcatcagttgccatcggctgcaagaacctgatagagatagacttgaagcgttgctattct 816

                         
Query: 665 gtcgatgattctgg 678
           ||||||||| ||||
Sbjct: 817 gtcgatgatgctgg 830

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  198 bits (100), Expect = 2e-47
 Identities = 217/256 (84%)
 Strand = Plus / Plus

                                                                            
Query: 423      gctgcagttctatcactgatgatgggctggcagccttagccaacggctgcaagaaaatta 482
                |||||| |||||| || ||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct: 22494357 gctgcaattctattaccgatgatgggctggcagctttagctaatggctgcaagaagatta 22494416

                                                                            
Query: 483      agctgctgaacctttgttactgcaacaagataactgatagtggtttgagccacctgggcg 542
                || |||| ||||| || |||||||||||||| || || ||||||||| ||||||| ||| 
Sbjct: 22494417 agatgctaaacctatgctactgcaacaagattaccgacagtggtttgggccacctaggct 22494476

                                                                            
Query: 543      ctcttgaggagctcacaaaccttgagctgaggtgcctcgttcgcattacaggcatcggaa 602
                |||| |||||||||||||||||||| ||||||||| | || || || ||||| || ||||
Sbjct: 22494477 ctctagaggagctcacaaaccttgaactgaggtgcttggtccgtataacaggtattggaa 22494536

                                                                            
Query: 603      tttcttccgttgtcattggctgtaagagcctggtagaacttgacttgaagcgctgctatt 662
                | || || |||| ||| ||||| |||| |||| ||||  | ||||||||||| |||||||
Sbjct: 22494537 tctcatcagttgccatcggctgcaagaacctgatagagatagacttgaagcgttgctatt 22494596

                                
Query: 663      ctgtcgatgattctgg 678
                ||||||||||| ||||
Sbjct: 22494597 ctgtcgatgatgctgg 22494612



 Score =  184 bits (93), Expect = 3e-43
 Identities = 234/281 (83%)
 Strand = Plus / Plus

                                                                            
Query: 5        ggttgtaccaacttggttgagattggactaagcaaatgcaacggtgttacagatgaaggc 64
                |||||||  |||||||| |||||||| || ||||||||||| || |||||||||||||| 
Sbjct: 22493758 ggttgtaataacttggtcgagattggccttagcaaatgcaatggcgttacagatgaagga 22493817

                                                                            
Query: 65       atctcttcgcttgtagctcgctgtagctacctaaggaaaattgatctcacatgctgcaat 124
                |||||||| |||||| |||  || ||| || |||||   ||||||||||||||||| || 
Sbjct: 22493818 atctcttcacttgtaactcaatgcagccacttaagggttattgatctcacatgctgtaac 22493877

                                                                            
Query: 125      ctagtcacaaacgattcccttgattcaatagctgacaactgtaagatgcttgaatgcctc 184
                ||  | || ||| || ||||||||||||||||||| |||||||||||| |||||   |||
Sbjct: 22493878 ctccttaccaacaatgcccttgattcaatagctgagaactgtaagatggttgaacatctc 22493937

                                                                            
Query: 185      cggttggagtcctgctcttctataaacgagaaaggactagagagaattgcaagctgttgc 244
                || ||||| ||||| ||||| |||| ||| || ||||| |||   ||||||| ||  |||
Sbjct: 22493938 cgtttggaatcctgttcttccataagcgaaaagggactggagcagattgcaacctcctgc 22493997

                                                         
Query: 245      cccaatctaaaggagatagatctcactgattgtggagtgaa 285
                |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 22493998 cccaatctaaaggagatagacctcactgactgtggagtgaa 22494038



 Score =  119 bits (60), Expect = 1e-23
 Identities = 111/128 (86%)
 Strand = Plus / Plus

                                                                            
Query: 296      ttgcatcatttggcgaagtgctctgaactgctgatattgaaattaggcctgagctcaagt 355
                ||||| || ||||| |||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 22494146 ttgcagcacttggccaagtgctctgaactgcttgtactgaaattaggcctgtgctcaagt 22494205

                                                                            
Query: 356      atttcggacaaaggccttggttttattagttcaaagtgtgggaagctcattgaacttgac 415
                ||||| |||||||| |||| |||||| |||||||  ||||| ||||| ||||| ||||| 
Sbjct: 22494206 atttctgacaaaggtcttgcttttatcagttcaagctgtggaaagctgattgagcttgat 22494265

                        
Query: 416      ctctatcg 423
                ||||||||
Sbjct: 22494266 ctctatcg 22494273



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 177      aatgcctccggttggagtcc 196
                ||||||||||||||||||||
Sbjct: 16174124 aatgcctccggttggagtcc 16174105

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  198 bits (100), Expect = 2e-47
 Identities = 217/256 (84%)
 Strand = Plus / Plus

                                                                            
Query: 423      gctgcagttctatcactgatgatgggctggcagccttagccaacggctgcaagaaaatta 482
                |||||| |||||| || ||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct: 22422702 gctgcaattctattaccgatgatgggctggcagctttagctaatggctgcaagaagatta 22422761

                                                                            
Query: 483      agctgctgaacctttgttactgcaacaagataactgatagtggtttgagccacctgggcg 542
                || |||| ||||| || |||||||||||||| || || ||||||||| ||||||| ||| 
Sbjct: 22422762 agatgctaaacctatgctactgcaacaagattaccgacagtggtttgggccacctaggct 22422821

                                                                            
Query: 543      ctcttgaggagctcacaaaccttgagctgaggtgcctcgttcgcattacaggcatcggaa 602
                |||| |||||||||||||||||||| ||||||||| | || || || ||||| || ||||
Sbjct: 22422822 ctctagaggagctcacaaaccttgaactgaggtgcttggtccgtataacaggtattggaa 22422881

                                                                            
Query: 603      tttcttccgttgtcattggctgtaagagcctggtagaacttgacttgaagcgctgctatt 662
                | || || |||| ||| ||||| |||| |||| ||||  | ||||||||||| |||||||
Sbjct: 22422882 tctcatcagttgccatcggctgcaagaacctgatagagatagacttgaagcgttgctatt 22422941

                                
Query: 663      ctgtcgatgattctgg 678
                ||||||||||| ||||
Sbjct: 22422942 ctgtcgatgatgctgg 22422957



 Score =  184 bits (93), Expect = 3e-43
 Identities = 234/281 (83%)
 Strand = Plus / Plus

                                                                            
Query: 5        ggttgtaccaacttggttgagattggactaagcaaatgcaacggtgttacagatgaaggc 64
                |||||||  |||||||| |||||||| || ||||||||||| || |||||||||||||| 
Sbjct: 22422103 ggttgtaataacttggtcgagattggccttagcaaatgcaatggcgttacagatgaagga 22422162

                                                                            
Query: 65       atctcttcgcttgtagctcgctgtagctacctaaggaaaattgatctcacatgctgcaat 124
                |||||||| |||||| |||  || ||| || |||||   ||||||||||||||||| || 
Sbjct: 22422163 atctcttcacttgtaactcaatgcagccacttaagggttattgatctcacatgctgtaac 22422222

                                                                            
Query: 125      ctagtcacaaacgattcccttgattcaatagctgacaactgtaagatgcttgaatgcctc 184
                ||  | || ||| || ||||||||||||||||||| |||||||||||| |||||   |||
Sbjct: 22422223 ctccttaccaacaatgcccttgattcaatagctgagaactgtaagatggttgaacatctc 22422282

                                                                            
Query: 185      cggttggagtcctgctcttctataaacgagaaaggactagagagaattgcaagctgttgc 244
                || ||||| ||||| ||||| |||| ||| || ||||| |||   ||||||| ||  |||
Sbjct: 22422283 cgtttggaatcctgttcttccataagcgaaaagggactggagcagattgcaacctcctgc 22422342

                                                         
Query: 245      cccaatctaaaggagatagatctcactgattgtggagtgaa 285
                |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 22422343 cccaatctaaaggagatagacctcactgactgtggagtgaa 22422383



 Score =  119 bits (60), Expect = 1e-23
 Identities = 111/128 (86%)
 Strand = Plus / Plus

                                                                            
Query: 296      ttgcatcatttggcgaagtgctctgaactgctgatattgaaattaggcctgagctcaagt 355
                ||||| || ||||| |||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 22422491 ttgcagcacttggccaagtgctctgaactgcttgtactgaaattaggcctgtgctcaagt 22422550

                                                                            
Query: 356      atttcggacaaaggccttggttttattagttcaaagtgtgggaagctcattgaacttgac 415
                ||||| |||||||| |||| |||||| |||||||  ||||| ||||| ||||| ||||| 
Sbjct: 22422551 atttctgacaaaggtcttgcttttatcagttcaagctgtggaaagctgattgagcttgat 22422610

                        
Query: 416      ctctatcg 423
                ||||||||
Sbjct: 22422611 ctctatcg 22422618



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 177      aatgcctccggttggagtcc 196
                ||||||||||||||||||||
Sbjct: 16127357 aatgcctccggttggagtcc 16127338

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>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 183414

 Score =  198 bits (100), Expect = 2e-47
 Identities = 217/256 (84%)
 Strand = Plus / Minus

                                                                         
Query: 423   gctgcagttctatcactgatgatgggctggcagccttagccaacggctgcaagaaaatta 482
             |||||| |||||| || ||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct: 13177 gctgcaattctattaccgatgatgggctggcagctttagctaatggctgcaagaagatta 13118

                                                                         
Query: 483   agctgctgaacctttgttactgcaacaagataactgatagtggtttgagccacctgggcg 542
             || |||| ||||| || |||||||||||||| || || ||||||||| ||||||| ||| 
Sbjct: 13117 agatgctaaacctatgctactgcaacaagattaccgacagtggtttgggccacctaggct 13058

                                                                         
Query: 543   ctcttgaggagctcacaaaccttgagctgaggtgcctcgttcgcattacaggcatcggaa 602
             |||| |||||||||||||||||||| ||||||||| | || || || ||||| || ||||
Sbjct: 13057 ctctagaggagctcacaaaccttgaactgaggtgcttggtccgtataacaggtattggaa 12998

                                                                         
Query: 603   tttcttccgttgtcattggctgtaagagcctggtagaacttgacttgaagcgctgctatt 662
             | || || |||| ||| ||||| |||| |||| ||||  | ||||||||||| |||||||
Sbjct: 12997 tctcatcagttgccatcggctgcaagaacctgatagagatagacttgaagcgttgctatt 12938

                             
Query: 663   ctgtcgatgattctgg 678
             ||||||||||| ||||
Sbjct: 12937 ctgtcgatgatgctgg 12922



 Score =  184 bits (93), Expect = 3e-43
 Identities = 234/281 (83%)
 Strand = Plus / Minus

                                                                         
Query: 5     ggttgtaccaacttggttgagattggactaagcaaatgcaacggtgttacagatgaaggc 64
             |||||||  |||||||| |||||||| || ||||||||||| || |||||||||||||| 
Sbjct: 13776 ggttgtaataacttggtcgagattggccttagcaaatgcaatggcgttacagatgaagga 13717

                                                                         
Query: 65    atctcttcgcttgtagctcgctgtagctacctaaggaaaattgatctcacatgctgcaat 124
             |||||||| |||||| |||  || ||| || |||||   ||||||||||||||||| || 
Sbjct: 13716 atctcttcacttgtaactcaatgcagccacttaagggttattgatctcacatgctgtaac 13657

                                                                         
Query: 125   ctagtcacaaacgattcccttgattcaatagctgacaactgtaagatgcttgaatgcctc 184
             ||  | || ||| || ||||||||||||||||||| |||||||||||| |||||   |||
Sbjct: 13656 ctccttaccaacaatgcccttgattcaatagctgagaactgtaagatggttgaacatctc 13597

                                                                         
Query: 185   cggttggagtcctgctcttctataaacgagaaaggactagagagaattgcaagctgttgc 244
             || ||||| ||||| ||||| |||| ||| || ||||| |||   ||||||| ||  |||
Sbjct: 13596 cgtttggaatcctgttcttccataagcgaaaagggactggagcagattgcaacctcctgc 13537

                                                      
Query: 245   cccaatctaaaggagatagatctcactgattgtggagtgaa 285
             |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 13536 cccaatctaaaggagatagacctcactgactgtggagtgaa 13496



 Score =  119 bits (60), Expect = 1e-23
 Identities = 111/128 (86%)
 Strand = Plus / Minus

                                                                         
Query: 296   ttgcatcatttggcgaagtgctctgaactgctgatattgaaattaggcctgagctcaagt 355
             ||||| || ||||| |||||||||||||||||  || |||||||||||||| ||||||||
Sbjct: 13388 ttgcagcacttggccaagtgctctgaactgcttgtactgaaattaggcctgtgctcaagt 13329

                                                                         
Query: 356   atttcggacaaaggccttggttttattagttcaaagtgtgggaagctcattgaacttgac 415
             ||||| |||||||| |||| |||||| |||||||  ||||| ||||| ||||| ||||| 
Sbjct: 13328 atttctgacaaaggtcttgcttttatcagttcaagctgtggaaagctgattgagcttgat 13269

                     
Query: 416   ctctatcg 423
             ||||||||
Sbjct: 13268 ctctatcg 13261

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>gb|AY105740.1| Zea mays PCO079161 mRNA sequence
          Length = 901

 Score =  184 bits (93), Expect = 3e-43
 Identities = 228/273 (83%)
 Strand = Plus / Plus

                                                                       
Query: 305 ttggcgaagtgctctgaactgctgatattgaaattaggcctgagctcaagtatttcggac 364
           ||||| || ||||||||| |||  |||||||||||||||||  ||||||||||||| |||
Sbjct: 313 ttggctaaatgctctgaattgcgaatattgaaattaggcctatgctcaagtatttctgac 372

                                                                       
Query: 365 aaaggccttggttttattagttcaaagtgtgggaagctcattgaacttgacctctatcgc 424
           | |||| |||  ||||| ||||| || ||||| |||||| | || ||||| ||||| || 
Sbjct: 373 agaggcattgcatttatcagttcgaattgtggaaagctcgtggagcttgatctctaccgg 432

                                                                       
Query: 425 tgcagttctatcactgatgatgggctggcagccttagccaacggctgcaagaaaattaag 484
           ||||  ||||| |||||||||||| ||||||| ||||| || || |||||||  ||||||
Sbjct: 433 tgcaactctattactgatgatgggttggcagctttagcaaatgggtgcaagaggattaag 492

                                                                       
Query: 485 ctgctgaacctttgttactgcaacaagataactgatagtggtttgagccacctgggcgct 544
            | |||||| | ||||||||||||||||| ||||||| ||||||| | ||||| ||| | 
Sbjct: 493 ttactgaacttgtgttactgcaacaagatcactgatactggtttgggtcacctaggctcc 552

                                            
Query: 545 cttgaggagctcacaaaccttgagctgaggtgc 577
           || |||||||||||||||||||| |||||||||
Sbjct: 553 ctggaggagctcacaaaccttgaactgaggtgc 585



 Score =  159 bits (80), Expect = 1e-35
 Identities = 155/180 (86%)
 Strand = Plus / Plus

                                                                       
Query: 103 aattgatctcacatgctgcaatctagtcacaaacgattcccttgattcaatagctgacaa 162
           ||||||||||||||||||||||||  | || ||| || | ||||||||||||||||||||
Sbjct: 119 aattgatctcacatgctgcaatctcattaccaacaatgcgcttgattcaatagctgacaa 178

                                                                       
Query: 163 ctgtaagatgcttgaatgcctccggttggagtcctgctcttctataaacgagaaaggact 222
           ||||||||||||||||||  | |||||||| || |||||||  ||||| ||||| |||||
Sbjct: 179 ctgtaagatgcttgaatgtttgcggttggaatcatgctctttgataaatgagaagggact 238

                                                                       
Query: 223 agagagaattgcaagctgttgccccaatctaaaggagatagatctcactgattgtggagt 282
           |||| ||||| |||  ||||||||||| || ||||||||||| |||||||| || |||||
Sbjct: 239 agagcgaattacaacttgttgccccaaccttaaggagatagacctcactgactgcggagt 298

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>gb|AC108097.3| Homo sapiens chromosome 16 clone RP11-109P11, complete sequence
          Length = 181387

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 216   aaggactagagagaattgcaagctgt 241
             ||||||||||||||| ||||||||||
Sbjct: 30997 aaggactagagagaagtgcaagctgt 30972

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>gb|AC159909.8| Mus musculus 10 BAC RP23-312M21 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 184546

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 98   aggaaaattgatctcacatgctgcaatcta 127
            ||||||||||| ||||||| ||||||||||
Sbjct: 6161 aggaaaattgaactcacatcctgcaatcta 6132

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>gb|AC092332.4| Homo sapiens chromosome 16 clone RP11-18F14, complete sequence
          Length = 155886

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 216   aaggactagagagaattgcaagctgt 241
             ||||||||||||||| ||||||||||
Sbjct: 20351 aaggactagagagaagtgcaagctgt 20376

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>gb|AC153944.3| Mus musculus 10 BAC RP24-292A13 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 139203

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 98    aggaaaattgatctcacatgctgcaatcta 127
             ||||||||||| ||||||| ||||||||||
Sbjct: 75090 aggaaaattgaactcacatcctgcaatcta 75119

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>gb|AC159290.2| Mus musculus BAC clone RP23-291I2 from chromosome 13, complete sequence
          Length = 231853

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 472    caagaaaattaagctgctgaacctt 496
              ||||||||||||||||||| |||||
Sbjct: 158513 caagaaaattaagctgctgtacctt 158537

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>gb|AC156572.3| Mus musculus BAC clone RP23-216C6 from chromosome 13, complete sequence
          Length = 208578

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 472    caagaaaattaagctgctgaacctt 496
              ||||||||||||||||||| |||||
Sbjct: 205767 caagaaaattaagctgctgtacctt 205791

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>ref|XM_423852.1| PREDICTED: Gallus gallus similar to achalasia, adrenocortical
           insufficiency, alacrimia (Allgrove, triple-A); aladin;
           adracalin (LOC426188), partial mRNA
          Length = 1670

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 384 gttcaaagtgtgggaagctca 404
           |||||||||||||||||||||
Sbjct: 518 gttcaaagtgtgggaagctca 538

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>ref|XM_981226.1| PREDICTED: Mus musculus similar to zinc finger protein 124
            (LOC638508), mRNA
          Length = 1918

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 472  caagaaaattaagctgctgaacctt 496
            ||||||||||||||||||| |||||
Sbjct: 1829 caagaaaattaagctgctgtacctt 1853

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>ref|XM_904598.2| PREDICTED: Mus musculus similar to zinc finger protein 665,
            transcript variant 1 (LOC630978), mRNA
          Length = 2421

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 472  caagaaaattaagctgctgaacctt 496
            ||||||||||||||||||| |||||
Sbjct: 2332 caagaaaattaagctgctgtacctt 2356

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>ref|XM_914551.2| PREDICTED: Mus musculus similar to Zinc finger protein Kr18 (HKr18)
            (LOC638508), mRNA
          Length = 2998

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 472  caagaaaattaagctgctgaacctt 496
            ||||||||||||||||||| |||||
Sbjct: 2909 caagaaaattaagctgctgtacctt 2933

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>gb|BC058422.1| Mus musculus cDNA clone IMAGE:5689029, partial cds
          Length = 1173

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 472  caagaaaattaagctgctgaacctt 496
            ||||||||||||||||||| |||||
Sbjct: 1065 caagaaaattaagctgctgtacctt 1089

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>emb|CR390825.1| Gallus gallus finished cDNA, clone ChEST968j9
          Length = 837

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 384 gttcaaagtgtgggaagctca 404
           |||||||||||||||||||||
Sbjct: 241 gttcaaagtgtgggaagctca 261

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>gb|AC090054.2|AC090054 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence
          Length = 139050

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 93   acctaaggaaaattgatctcacatg 117
            ||||||||||||||||||| |||||
Sbjct: 8503 acctaaggaaaattgatctaacatg 8527

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 93      acctaaggaaaattgatctcacatg 117
               ||||||||||||||||||| |||||
Sbjct: 5897580 acctaaggaaaattgatctaacatg 5897604

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>dbj|AP006528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0651G05
          Length = 153258

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 93    acctaaggaaaattgatctcacatg 117
             ||||||||||||||||||| |||||
Sbjct: 89067 acctaaggaaaattgatctaacatg 89091

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>dbj|AP006727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0645D04
          Length = 142890

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 93   acctaaggaaaattgatctcacatg 117
            ||||||||||||||||||| |||||
Sbjct: 8511 acctaaggaaaattgatctaacatg 8535

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>emb|CT030172.10| Mouse DNA sequence from clone RP23-313L22 on chromosome 13, complete
              sequence
          Length = 228833

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 472    caagaaaattaagctgctgaacctt 496
              ||||||||||||||||||| |||||
Sbjct: 103331 caagaaaattaagctgctgtacctt 103307

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>gb|AC002366.1|AC002366 Human Xp22 BAC CT-285I15 (from CalTech/Research Genetics) , PAC
              RPCI1-27C22 (from Roswell Park Cancer Center), and Cosmid
              U35B5 (from Lawrence Livermore), complete sequence
          Length = 259202

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    aaggagatagatctcactgat 274
              |||||||||||||||||||||
Sbjct: 216473 aaggagatagatctcactgat 216453

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>emb|CT030185.11| Mouse DNA sequence from clone RP23-204L16 on chromosome 13, complete
             sequence
          Length = 116416

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 472   caagaaaattaagctgctgaacctt 496
             ||||||||||||||||||| |||||
Sbjct: 26773 caagaaaattaagctgctgtacctt 26749

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>gb|AC166156.4| Mus musculus BAC clone RP24-274H19 from chromosome 3, complete sequence
          Length = 176294

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    aagtgctctgaactgctgat 330
              ||||||||||||||||||||
Sbjct: 133360 aagtgctctgaactgctgat 133379

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>gb|AC122283.3| Mus musculus BAC clone RP23-242G6 from chromosome 10, complete sequence
          Length = 184346

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   aaaggactagagagaattgc 234
             ||||||||||||||||||||
Sbjct: 34129 aaaggactagagagaattgc 34110

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>gb|AC164958.3| Mus musculus BAC clone RP23-359G24 from chromosome 3, complete sequence
          Length = 230133

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    aagtgctctgaactgctgat 330
              ||||||||||||||||||||
Sbjct: 217421 aagtgctctgaactgctgat 217440

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>ref|XM_823900.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.1050)
           partial mRNA
          Length = 2292

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 5   ggttgtaccaacttggttga 24
           ||||||||||||||||||||
Sbjct: 964 ggttgtaccaacttggttga 945

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>gb|AC126028.4| Mus musculus BAC clone RP24-542M6 from chromosome 15, complete sequence
          Length = 168344

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    gaagtgctctgaactgctga 329
              ||||||||||||||||||||
Sbjct: 151403 gaagtgctctgaactgctga 151422

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>gb|AC114006.3| Mus musculus BAC clone RP23-185F9 from 17, complete sequence
          Length = 202882

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    gaagtgctctgaactgctga 329
              ||||||||||||||||||||
Sbjct: 132488 gaagtgctctgaactgctga 132469

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>gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, complete sequence
          Length = 204911

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   gaagtgctctgaactgctga 329
             ||||||||||||||||||||
Sbjct: 17635 gaagtgctctgaactgctga 17616

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>emb|AL645907.9| Mouse DNA sequence from clone RP23-9N7 on chromosome 11 Contains the 5'
              end of a novel gene, a novel gene, the Clk4 gene for CDC
              like kinase 4, the 5' end of the Col23a1 gene for
              procollagen (type XXIII, alpha 1) and two CpG islands,
              complete sequence
          Length = 219268

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    gaagtgctctgaactgctga 329
              ||||||||||||||||||||
Sbjct: 206177 gaagtgctctgaactgctga 206158

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>dbj|AK028979.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732477F15 product:unclassifiable, full
            insert sequence
          Length = 2955

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  gaagtgctctgaactgctga 329
            ||||||||||||||||||||
Sbjct: 2787 gaagtgctctgaactgctga 2768

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>gb|AC152417.3| Mus musculus BAC clone RP23-56I21 from chromosome 10, complete sequence
          Length = 233783

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   aaaggactagagagaattgc 234
             ||||||||||||||||||||
Sbjct: 34092 aaaggactagagagaattgc 34111

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>gb|AF120996.1|AF120996 Mus musculus domesticus methyl-CpG binding protein 4 (Mbd4) gene,
            complete cds
          Length = 15167

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  gaagtgctctgaactgctga 329
            ||||||||||||||||||||
Sbjct: 9957 gaagtgctctgaactgctga 9938

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>gb|AC117614.12| Mus musculus chromosome 5, clone RP23-110C17, complete sequence
          Length = 222809

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    aagtgctctgaactgctgat 330
              ||||||||||||||||||||
Sbjct: 118085 aagtgctctgaactgctgat 118104

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>emb|AL928823.11| Mouse DNA sequence from clone RP23-472P9 on chromosome 2, complete
             sequence
          Length = 100839

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   aagtgctctgaactgctgat 330
             ||||||||||||||||||||
Sbjct: 85113 aagtgctctgaactgctgat 85094

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>gb|AC005305.1|AC005305 Homo sapiens chromosome 19, cosmid R34275, complete sequence
          Length = 40634

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   tgaatgcctccggttggagt 194
             ||||||||||||||||||||
Sbjct: 22383 tgaatgcctccggttggagt 22402

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>emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 165955

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   aatgcctccggttggagtcc 196
             ||||||||||||||||||||
Sbjct: 69219 aatgcctccggttggagtcc 69238

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>gb|AC133083.3| Mus musculus BAC clone RP24-342G5 from 12, complete sequence
          Length = 191265

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   gaagtgctctgaactgctga 329
             ||||||||||||||||||||
Sbjct: 52184 gaagtgctctgaactgctga 52165

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>gb|AC142099.3| Mus musculus BAC clone RP24-350H4 from 6, complete sequence
          Length = 167731

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    gaagtgctctgaactgctga 329
              ||||||||||||||||||||
Sbjct: 106620 gaagtgctctgaactgctga 106601

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>gb|AC132135.3| Mus musculus BAC clone RP23-268C21 from 10, complete sequence
          Length = 168874

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   aaaggactagagagaattgc 234
             ||||||||||||||||||||
Sbjct: 12435 aaaggactagagagaattgc 12454

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>gb|AC134604.5| Mus musculus BAC clone RP23-296I5 from 12, complete sequence
          Length = 203284

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  gaagtgctctgaactgctga 329
            ||||||||||||||||||||
Sbjct: 9912 gaagtgctctgaactgctga 9931

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>gb|AC144632.4| Mus musculus BAC clone RP23-106G16 from chromosome 15, complete sequence
          Length = 206265

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    gaagtgctctgaactgctga 329
              ||||||||||||||||||||
Sbjct: 151907 gaagtgctctgaactgctga 151888

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>emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on chromosome 2, complete
             sequence
          Length = 201671

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gtgggaagctcattgaactt 412
             ||||||||||||||||||||
Sbjct: 47035 gtgggaagctcattgaactt 47016


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,568,287
Number of Sequences: 3902068
Number of extensions: 5568287
Number of successful extensions: 96794
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96585
Number of HSP's gapped (non-prelim): 200
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result