Clone Information

BLAST Search Result

Clone Name	bags13e19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK065776.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	505	e-140
2	ref\|NM_187659.1\| Oryza sativa (japonica cultivar-group), predic...	379	e-102
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	258	2e-65
4	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	258	2e-65
5	gb\|AC113930.2\| Oryza sativa (japonica cultivar-group) chromosome...	258	2e-65
6	ref\|NM_111578.1\| Arabidopsis thaliana ATP binding / ATP-dependen...	48	0.032
7	gb\|AC016827.7\|ATAC016827 Arabidopsis thaliana chromosome III BAC...	48	0.032
8	emb\|AJ296275.1\|ATH296275 Arabidopsis thaliana partial mRNA for D...	48	0.032
9	gb\|AY113064.1\| Arabidopsis thaliana AT3g06980/F17A9_13 mRNA, com...	48	0.032
10	gb\|AY048260.1\| Arabidopsis thaliana AT3g06980/F17A9_13 mRNA, com...	48	0.032
11	gb\|BT002520.1\| Arabidopsis thaliana putative DEAD/DEAH box helic...	48	0.032
12	gb\|AC140433.3\| Mus musculus BAC clone RP23-96L16 from chromosome...	42	2.0
13	emb\|AL133520.5\| Human DNA sequence from clone RP1-101A2 on chrom...	42	2.0
14	gb\|AC121818.3\| Mus musculus BAC clone RP23-459J16 from chromosom...	42	2.0
15	gb\|AC122864.3\| Mus musculus BAC clone RP23-142M19 from 6, comple...	42	2.0
16	emb\|BX571945.15\| Zebrafish DNA sequence from clone DKEY-267I17 i...	42	2.0
17	emb\|BX571721.8\| Zebrafish DNA sequence from clone DKEY-250L23 in...	42	2.0
18	emb\|BX296553.6\| Zebrafish DNA sequence from clone CH211-222G19 i...	42	2.0
19	gb\|AY950306.1\| Polyascus polygenea DEAD-box RNA helicase (Db-pr2...	42	2.0
20	emb\|BX649441.5\| Zebrafish DNA sequence from clone DKEYP-3B1 in l...	42	2.0
21	emb\|BX005407.5\| Zebrafish DNA sequence from clone CH211-222C22 i...	42	2.0
22	gb\|AC116115.11\| Mus musculus chromosome 6, clone RP23-60P18, com...	42	2.0
23	gb\|AC182676.2\| Populus trichocarpa clone Pop1-29E23, complete se...	40	7.7
24	gb\|AC127028.18\| Mus musculus chromosome 18, clone RP23-345J21, c...	40	7.7
25	gb\|AC114573.11\| Mus musculus chromosome 13, clone RP23-146M15, c...	40	7.7
26	emb\|CR376775.7\| Zebrafish DNA sequence from clone CH211-197C5 in...	40	7.7
27	emb\|CR936486.7\| Zebrafish DNA sequence from clone DKEY-279C17 in...	40	7.7
28	gb\|AC121576.2\| Mus musculus BAC clone RP23-244D21 from 18, compl...	40	7.7
29	emb\|AL603632.3\| Human DNA sequence from clone RP11-323M24 on chr...	40	7.7
30	emb\|AL163832.1\|ATF27K19 Arabidopsis thaliana DNA chromosome 3, B...	40	7.7
31	emb\|AL672143.12\| Mouse DNA sequence from clone RP23-467P3 on chr...	40	7.7
32	gb\|AC154492.2\| Mus musculus BAC clone RP24-107B10 from chromosom...	40	7.7
33	ref\|NM_199882.1\| Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypept...	40	7.7
34	emb\|BX571711.8\| Zebrafish DNA sequence from clone DKEY-57L19 in ...	40	7.7
35	gb\|AC092110.9\| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Can...	40	7.7
36	gb\|BC060524.1\| Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptid...	40	7.7
37	ref\|XM_697064.1\| PREDICTED: Danio rerio hypothetical protein LOC...	40	7.7
38	gb\|AC093413.2\| Homo sapiens chromosome 3 clone RP11-170K19, comp...	40	7.7
39	gb\|DP000034.1\| Atelerix albiventris target 116 genomic scaffold	40	7.7
40	emb\|AL953856.8\| Zebrafish DNA sequence from clone DKEY-43F9 in l...	40	7.7
41	gb\|AC169088.2\| Gallus gallus BAC clone CH261-100B3 from chromoso...	40	7.7
42	emb\|AL133500.4\|HSP12 Homo sapiens chromosome X sequence from BA...	40	7.7
43	emb\|AL807756.9\| Mouse DNA sequence from clone RP23-36M9 on chrom...	40	7.7
44	emb\|AL671915.8\| Mouse DNA sequence from clone RP23-182N4 on chro...	40	7.7

>dbj|AK065776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038N14, full
            insert sequence
          Length = 2108

 Score =  505 bits (255), Expect = e-140
 Identities = 468/539 (86%)
 Strand = Plus / Plus

                                                                        
Query: 30   ccatcacatattcaggctatggcatatgctcctgtcttggaggggaggagttgcattatt 89
            ||||| ||||||||||| |||||||||   ||||||||||||||||  || |||||||||
Sbjct: 826  ccatcgcatattcaggcgatggcatatcgacctgtcttggaggggaaaagctgcattatt 885

                                                                        
Query: 90   gctgatcaaagtgggtctggcaagacattggcatatctttgccctatagttcaaaattta 149
            | |||||||||||| |||||||||||||||||||||||||||||  |||| |||||  | 
Sbjct: 886  ggtgatcaaagtggatctggcaagacattggcatatctttgcccagtagtacaaaacctg 945

                                                                        
Query: 150  agaaaggaagaagctatggggatccacaaaccatctcccaggaacccacgagtcgtaata 209
            || |||||||||| |  |||| |||| |   | ||||| |||||||||||||| ||| ||
Sbjct: 946  aggaaggaagaagttgaggggctccataggtcttctcctaggaacccacgagtggtagta 1005

                                                                        
Query: 210  ttgacacctactgctgaactttcatctcaggtccttcagaattgccgttcaatatcgaaa 269
             |||| ||||| ||||| ||| | |||||||||||| | || ||||| ||||||||||||
Sbjct: 1006 ctgacgcctacagctgagcttgcttctcaggtccttaacaactgccggtcaatatcgaaa 1065

                                                                        
Query: 270  tctggggttcccttcaggtctatggttgcaaccggtggatttcgacagaagacacagcta 329
            || ||||| || || ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 1066 tcgggggtaccttttaggtctatggttgcaactggtggatttcgacagaagacacagtta 1125

                                                                        
Query: 330  gaaagccttgatcaagagctagatgtacttatagcaacacctggtcgtttcttgtatctg 389
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 1126 gaaagtcttgatcaagagcttgatgtacttattgcaacacctggtcgtttcttgtatctg 1185

                                                                        
Query: 390  cttcaggaaggctttgtgcagctaaataacctcagatgtgctgtgtttgatgaagtggat 449
            ||||| ||||||||||||||  |||||||||||||||||| |||| | ||||||||||||
Sbjct: 1186 cttcaagaaggctttgtgcaattaaataacctcagatgtgttgtgctggatgaagtggat 1245

                                                                        
Query: 450  attttatttagtgaagaaggctttgaacaagtgcttcatcagttgattactatcgcacca 509
            ||||||| | |||||||| | |||||||||||||||||||| ||||||||| | ||||||
Sbjct: 1246 attttatatggtgaagaaagttttgaacaagtgcttcatcaattgattactgttgcacca 1305

                                                                       
Query: 510  gtgaccacacagtatcttttcgtcactgccactctccctcttgatatatataacaaggt 568
             ||||||| || ||||| || |||||||||||||| ||||| || || || ||||||||
Sbjct: 1306 ctgaccacgcaatatctctttgtcactgccactcttcctctcgacatctacaacaaggt 1364

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>ref|NM_187659.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2277

 Score =  379 bits (191), Expect = e-102
 Identities = 299/335 (89%)
 Strand = Plus / Plus

                                                                        
Query: 234  tctcaggtccttcagaattgccgttcaatatcgaaatctggggttcccttcaggtctatg 293
            |||||||||||| | || ||||| |||||||||||||| ||||| || || |||||||||
Sbjct: 1279 tctcaggtccttaacaactgccggtcaatatcgaaatcgggggtaccttttaggtctatg 1338

                                                                        
Query: 294  gttgcaaccggtggatttcgacagaagacacagctagaaagccttgatcaagagctagat 353
            |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct: 1339 gttgcaactggtggatttcgacagaagacacagttagaaagtcttgatcaagagcttgat 1398

                                                                        
Query: 354  gtacttatagcaacacctggtcgtttcttgtatctgcttcaggaaggctttgtgcagcta 413
            |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||
Sbjct: 1399 gtacttattgcaacacctggtcgtttcttgtatctgcttcaagaaggctttgtgcaatta 1458

                                                                        
Query: 414  aataacctcagatgtgctgtgtttgatgaagtggatattttatttagtgaagaaggcttt 473
            |||||||||||||||| |||| | ||||||||||||||||||| | |||||||| | |||
Sbjct: 1459 aataacctcagatgtgttgtgctggatgaagtggatattttatatggtgaagaaagtttt 1518

                                                                        
Query: 474  gaacaagtgcttcatcagttgattactatcgcaccagtgaccacacagtatcttttcgtc 533
            ||||||||||||||||| ||||||||| | |||||| ||||||| || ||||| || |||
Sbjct: 1519 gaacaagtgcttcatcaattgattactgttgcaccactgaccacgcaatatctctttgtc 1578

                                               
Query: 534  actgccactctccctcttgatatatataacaaggt 568
            ||||||||||| ||||| || || || ||||||||
Sbjct: 1579 actgccactcttcctctcgacatctacaacaaggt 1613



 Score =  143 bits (72), Expect = 7e-31
 Identities = 177/212 (83%)
 Strand = Plus / Plus

                                                                        
Query: 30   ccatcacatattcaggctatggcatatgctcctgtcttggaggggaggagttgcattatt 89
            ||||| ||||||||||| |||||||||   ||||||||||||||||  || |||||||||
Sbjct: 973  ccatcgcatattcaggcgatggcatatcgacctgtcttggaggggaaaagctgcattatt 1032

                                                                        
Query: 90   gctgatcaaagtgggtctggcaagacattggcatatctttgccctatagttcaaaattta 149
            | |||||||||||| |||||||||||||||||||||||||||||  |||| |||||  | 
Sbjct: 1033 ggtgatcaaagtggatctggcaagacattggcatatctttgcccagtagtacaaaacctg 1092

                                                                        
Query: 150  agaaaggaagaagctatggggatccacaaaccatctcccaggaacccacgagtcgtaata 209
            || |||||||||| |  |||| |||| |   | ||||| |||||||||||||| ||| ||
Sbjct: 1093 aggaaggaagaagttgaggggctccataggtcttctcctaggaacccacgagtggtagta 1152

                                            
Query: 210  ttgacacctactgctgaactttcatctcaggt 241
             |||| ||||| ||||| ||| | ||||||||
Sbjct: 1153 ctgacgcctacagctgagcttgcttctcaggt 1184

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  258 bits (130), Expect = 2e-65
 Identities = 178/194 (91%)
 Strand = Plus / Plus

                                                                          
Query: 234    tctcaggtccttcagaattgccgttcaatatcgaaatctggggttcccttcaggtctatg 293
              |||||||||||| | || ||||| |||||||||||||| ||||| || || |||||||||
Sbjct: 485901 tctcaggtccttaacaactgccggtcaatatcgaaatcgggggtaccttttaggtctatg 485960

                                                                          
Query: 294    gttgcaaccggtggatttcgacagaagacacagctagaaagccttgatcaagagctagat 353
              |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct: 485961 gttgcaactggtggatttcgacagaagacacagttagaaagtcttgatcaagagcttgat 486020

                                                                          
Query: 354    gtacttatagcaacacctggtcgtttcttgtatctgcttcaggaaggctttgtgcagcta 413
              |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||
Sbjct: 486021 gtacttattgcaacacctggtcgtttcttgtatctgcttcaagaaggctttgtgcaatta 486080

                            
Query: 414    aataacctcagatg 427
              ||||||||||||||
Sbjct: 486081 aataacctcagatg 486094



 Score =  131 bits (66), Expect = 3e-27
 Identities = 168/202 (83%)
 Strand = Plus / Plus

                                                                          
Query: 40     ttcaggctatggcatatgctcctgtcttggaggggaggagttgcattattgctgatcaaa 99
              ||||||| |||||||||   ||||||||||||||||  || |||||||||| ||||||||
Sbjct: 485605 ttcaggcgatggcatatcgacctgtcttggaggggaaaagctgcattattggtgatcaaa 485664

                                                                          
Query: 100    gtgggtctggcaagacattggcatatctttgccctatagttcaaaatttaagaaaggaag 159
              |||| |||||||||||||||||||||||||||||  |||| |||||  | || |||||||
Sbjct: 485665 gtggatctggcaagacattggcatatctttgcccagtagtacaaaacctgaggaaggaag 485724

                                                                          
Query: 160    aagctatggggatccacaaaccatctcccaggaacccacgagtcgtaatattgacaccta 219
              ||| |  |||| |||| |   | ||||| |||||||||||||| ||| || |||| ||||
Sbjct: 485725 aagttgaggggctccataggtcttctcctaggaacccacgagtggtagtactgacgccta 485784

                                    
Query: 220    ctgctgaactttcatctcaggt 241
              | ||||| ||| | ||||||||
Sbjct: 485785 cagctgagcttgcttctcaggt 485806



 Score =  125 bits (63), Expect = 2e-25
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                          
Query: 438    gatgaagtggatattttatttagtgaagaaggctttgaacaagtgcttcatcagttgatt 497
              ||||||||||||||||||| | |||||||| | |||||||||||||||||||| ||||||
Sbjct: 486197 gatgaagtggatattttatatggtgaagaaagttttgaacaagtgcttcatcaattgatt 486256

                                                                          
Query: 498    actatcgcaccagtgaccacacagtatcttttcgtcactgccactctccctcttgatata 557
              ||| | |||||| ||||||| || ||||| || |||||||||||||| ||||| || || 
Sbjct: 486257 actgttgcaccactgaccacgcaatatctctttgtcactgccactcttcctctcgacatc 486316

                         
Query: 558    tataacaaggt 568
              || ||||||||
Sbjct: 486317 tacaacaaggt 486327

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  258 bits (130), Expect = 2e-65
 Identities = 178/194 (91%)
 Strand = Plus / Plus

                                                                          
Query: 234    tctcaggtccttcagaattgccgttcaatatcgaaatctggggttcccttcaggtctatg 293
              |||||||||||| | || ||||| |||||||||||||| ||||| || || |||||||||
Sbjct: 485899 tctcaggtccttaacaactgccggtcaatatcgaaatcgggggtaccttttaggtctatg 485958

                                                                          
Query: 294    gttgcaaccggtggatttcgacagaagacacagctagaaagccttgatcaagagctagat 353
              |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct: 485959 gttgcaactggtggatttcgacagaagacacagttagaaagtcttgatcaagagcttgat 486018

                                                                          
Query: 354    gtacttatagcaacacctggtcgtttcttgtatctgcttcaggaaggctttgtgcagcta 413
              |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||
Sbjct: 486019 gtacttattgcaacacctggtcgtttcttgtatctgcttcaagaaggctttgtgcaatta 486078

                            
Query: 414    aataacctcagatg 427
              ||||||||||||||
Sbjct: 486079 aataacctcagatg 486092



 Score =  131 bits (66), Expect = 3e-27
 Identities = 168/202 (83%)
 Strand = Plus / Plus

                                                                          
Query: 40     ttcaggctatggcatatgctcctgtcttggaggggaggagttgcattattgctgatcaaa 99
              ||||||| |||||||||   ||||||||||||||||  || |||||||||| ||||||||
Sbjct: 485603 ttcaggcgatggcatatcgacctgtcttggaggggaaaagctgcattattggtgatcaaa 485662

                                                                          
Query: 100    gtgggtctggcaagacattggcatatctttgccctatagttcaaaatttaagaaaggaag 159
              |||| |||||||||||||||||||||||||||||  |||| |||||  | || |||||||
Sbjct: 485663 gtggatctggcaagacattggcatatctttgcccagtagtacaaaacctgaggaaggaag 485722

                                                                          
Query: 160    aagctatggggatccacaaaccatctcccaggaacccacgagtcgtaatattgacaccta 219
              ||| |  |||| |||| |   | ||||| |||||||||||||| ||| || |||| ||||
Sbjct: 485723 aagttgaggggctccataggtcttctcctaggaacccacgagtggtagtactgacgccta 485782

                                    
Query: 220    ctgctgaactttcatctcaggt 241
              | ||||| ||| | ||||||||
Sbjct: 485783 cagctgagcttgcttctcaggt 485804



 Score =  125 bits (63), Expect = 2e-25
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                          
Query: 438    gatgaagtggatattttatttagtgaagaaggctttgaacaagtgcttcatcagttgatt 497
              ||||||||||||||||||| | |||||||| | |||||||||||||||||||| ||||||
Sbjct: 486195 gatgaagtggatattttatatggtgaagaaagttttgaacaagtgcttcatcaattgatt 486254

                                                                          
Query: 498    actatcgcaccagtgaccacacagtatcttttcgtcactgccactctccctcttgatata 557
              ||| | |||||| ||||||| || ||||| || |||||||||||||| ||||| || || 
Sbjct: 486255 actgttgcaccactgaccacgcaatatctctttgtcactgccactcttcctctcgacatc 486314

                         
Query: 558    tataacaaggt 568
              || ||||||||
Sbjct: 486315 tacaacaaggt 486325

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>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03,
             complete sequence
          Length = 116214

 Score =  258 bits (130), Expect = 2e-65
 Identities = 178/194 (91%)
 Strand = Plus / Plus

                                                                         
Query: 234   tctcaggtccttcagaattgccgttcaatatcgaaatctggggttcccttcaggtctatg 293
             |||||||||||| | || ||||| |||||||||||||| ||||| || || |||||||||
Sbjct: 84361 tctcaggtccttaacaactgccggtcaatatcgaaatcgggggtaccttttaggtctatg 84420

                                                                         
Query: 294   gttgcaaccggtggatttcgacagaagacacagctagaaagccttgatcaagagctagat 353
             |||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct: 84421 gttgcaactggtggatttcgacagaagacacagttagaaagtcttgatcaagagcttgat 84480

                                                                         
Query: 354   gtacttatagcaacacctggtcgtttcttgtatctgcttcaggaaggctttgtgcagcta 413
             |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||
Sbjct: 84481 gtacttattgcaacacctggtcgtttcttgtatctgcttcaagaaggctttgtgcaatta 84540

                           
Query: 414   aataacctcagatg 427
             ||||||||||||||
Sbjct: 84541 aataacctcagatg 84554



 Score =  131 bits (66), Expect = 3e-27
 Identities = 168/202 (83%)
 Strand = Plus / Plus

                                                                         
Query: 40    ttcaggctatggcatatgctcctgtcttggaggggaggagttgcattattgctgatcaaa 99
             ||||||| |||||||||   ||||||||||||||||  || |||||||||| ||||||||
Sbjct: 84065 ttcaggcgatggcatatcgacctgtcttggaggggaaaagctgcattattggtgatcaaa 84124

                                                                         
Query: 100   gtgggtctggcaagacattggcatatctttgccctatagttcaaaatttaagaaaggaag 159
             |||| |||||||||||||||||||||||||||||  |||| |||||  | || |||||||
Sbjct: 84125 gtggatctggcaagacattggcatatctttgcccagtagtacaaaacctgaggaaggaag 84184

                                                                         
Query: 160   aagctatggggatccacaaaccatctcccaggaacccacgagtcgtaatattgacaccta 219
             ||| |  |||| |||| |   | ||||| |||||||||||||| ||| || |||| ||||
Sbjct: 84185 aagttgaggggctccataggtcttctcctaggaacccacgagtggtagtactgacgccta 84244

                                   
Query: 220   ctgctgaactttcatctcaggt 241
             | ||||| ||| | ||||||||
Sbjct: 84245 cagctgagcttgcttctcaggt 84266



 Score =  125 bits (63), Expect = 2e-25
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                         
Query: 438   gatgaagtggatattttatttagtgaagaaggctttgaacaagtgcttcatcagttgatt 497
             ||||||||||||||||||| | |||||||| | |||||||||||||||||||| ||||||
Sbjct: 84657 gatgaagtggatattttatatggtgaagaaagttttgaacaagtgcttcatcaattgatt 84716

                                                                         
Query: 498   actatcgcaccagtgaccacacagtatcttttcgtcactgccactctccctcttgatata 557
             ||| | |||||| ||||||| || ||||| || |||||||||||||| ||||| || || 
Sbjct: 84717 actgttgcaccactgaccacgcaatatctctttgtcactgccactcttcctctcgacatc 84776

                        
Query: 558   tataacaaggt 568
             || ||||||||
Sbjct: 84777 tacaacaaggt 84787

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>ref|NM_111578.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT3G06980 mRNA, complete cds
          Length = 2581

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 77   gagttgcattattgctgatcaaagtgggtctggcaagacattggcatatctt 128
            |||||| || || ||||| |||||||| || ||||||||| |||||||||||
Sbjct: 1300 gagttgtatcatagctgaccaaagtggatcaggcaagacactggcatatctt 1351

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>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence,
             complete sequence
          Length = 90142

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 77    gagttgcattattgctgatcaaagtgggtctggcaagacattggcatatctt 128
             |||||| || || ||||| |||||||| || ||||||||| |||||||||||
Sbjct: 42094 gagttgtatcatagctgaccaaagtggatcaggcaagacactggcatatctt 42145

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>emb|AJ296275.1|ATH296275 Arabidopsis thaliana partial mRNA for DEAD-box RNA Helicase (hel
            gene)
          Length = 2589

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 77   gagttgcattattgctgatcaaagtgggtctggcaagacattggcatatctt 128
            |||||| || || ||||| |||||||| || ||||||||| |||||||||||
Sbjct: 1290 gagttgtatcatagctgaccaaagtggatcaggcaagacactggcatatctt 1341

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>gb|AY113064.1| Arabidopsis thaliana AT3g06980/F17A9_13 mRNA, complete cds
          Length = 2346

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 77   gagttgcattattgctgatcaaagtgggtctggcaagacattggcatatctt 128
            |||||| || || ||||| |||||||| || ||||||||| |||||||||||
Sbjct: 1236 gagttgtatcatagctgaccaaagtggatcaggcaagacactggcatatctt 1287

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>gb|AY048260.1| Arabidopsis thaliana AT3g06980/F17A9_13 mRNA, complete cds
          Length = 2581

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 77   gagttgcattattgctgatcaaagtgggtctggcaagacattggcatatctt 128
            |||||| || || ||||| |||||||| || ||||||||| |||||||||||
Sbjct: 1300 gagttgtatcatagctgaccaaagtggatcaggcaagacactggcatatctt 1351

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>gb|BT002520.1| Arabidopsis thaliana putative DEAD/DEAH box helicase (At3g06980)
            mRNA, complete cds
          Length = 2575

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                
Query: 77   gagttgcattattgctgatcaaagtgggtctggcaagacattggcatatctt 128
            |||||| || || ||||| |||||||| || ||||||||| |||||||||||
Sbjct: 1295 gagttgtatcatagctgaccaaagtggatcaggcaagacactggcatatctt 1346

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>gb|AC140433.3| Mus musculus BAC clone RP23-96L16 from chromosome 16, complete sequence
          Length = 231593

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 143    aaatttaagaaaggaagaagc 163
              |||||||||||||||||||||
Sbjct: 152457 aaatttaagaaaggaagaagc 152437

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>emb|AL133520.5| Human DNA sequence from clone RP1-101A2 on chromosome 20, complete
             sequence
          Length = 47325

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 535   ctgccactctccctcttgata 555
             |||||||||||||||||||||
Sbjct: 43623 ctgccactctccctcttgata 43643

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>gb|AC121818.3| Mus musculus BAC clone RP23-459J16 from chromosome 16, complete
             sequence
          Length = 199539

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   aaatttaagaaaggaagaagc 163
             |||||||||||||||||||||
Sbjct: 58890 aaatttaagaaaggaagaagc 58870

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>gb|AC122864.3| Mus musculus BAC clone RP23-142M19 from 6, complete sequence
          Length = 210148

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     tcctgtcttggaggggaggag 79
              |||||||||||||||||||||
Sbjct: 183628 tcctgtcttggaggggaggag 183648

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>emb|BX571945.15| Zebrafish DNA sequence from clone DKEY-267I17 in linkage group 5,
             complete sequence
          Length = 192769

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 280   ccttcaggtctatggttgcaa 300
             |||||||||||||||||||||
Sbjct: 26464 ccttcaggtctatggttgcaa 26444

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>emb|BX571721.8| Zebrafish DNA sequence from clone DKEY-250L23 in linkage group 8,
            complete sequence
          Length = 168402

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 280  ccttcaggtctatggttgcaa 300
            |||||||||||||||||||||
Sbjct: 2714 ccttcaggtctatggttgcaa 2734

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>emb|BX296553.6| Zebrafish DNA sequence from clone CH211-222G19 in linkage group 8,
             complete sequence
          Length = 108215

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 280   ccttcaggtctatggttgcaa 300
             |||||||||||||||||||||
Sbjct: 92270 ccttcaggtctatggttgcaa 92250

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>gb|AY950306.1| Polyascus polygenea DEAD-box RNA helicase (Db-pr2) gene, partial
           cds
          Length = 362

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 351 gatgtacttatagcaacacctggtcgttt 379
           ||||||||||| ||||||||||| |||||
Sbjct: 244 gatgtacttatcgcaacacctggccgttt 272

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>emb|BX649441.5| Zebrafish DNA sequence from clone DKEYP-3B1 in linkage group 20,
             complete sequence
          Length = 114252

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   tggggatccacaaaccatctc 186
             |||||||||||||||||||||
Sbjct: 25315 tggggatccacaaaccatctc 25335

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>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5,
             complete sequence
          Length = 209796

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 414   aataacctcagatgtgctgtg 434
             |||||||||||||||||||||
Sbjct: 74896 aataacctcagatgtgctgtg 74916

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>gb|AC116115.11| Mus musculus chromosome 6, clone RP23-60P18, complete sequence
          Length = 215571

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    tcctgtcttggaggggaggag 79
             |||||||||||||||||||||
Sbjct: 34289 tcctgtcttggaggggaggag 34309

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>gb|AC182676.2| Populus trichocarpa clone Pop1-29E23, complete sequence
          Length = 62085

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   gaaagccttgatcaagagct 349
             ||||||||||||||||||||
Sbjct: 45473 gaaagccttgatcaagagct 45492

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>gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, complete sequence
          Length = 191473

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ttaagaaaggaagaagctat 166
            ||||||||||||||||||||
Sbjct: 6579 ttaagaaaggaagaagctat 6560

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>gb|AC114573.11| Mus musculus chromosome 13, clone RP23-146M15, complete sequence
          Length = 200859

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   aaaatttaagaaaggaagaa 161
             ||||||||||||||||||||
Sbjct: 41148 aaaatttaagaaaggaagaa 41129

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>emb|CR376775.7| Zebrafish DNA sequence from clone CH211-197C5 in linkage group 23,
             complete sequence
          Length = 196846

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   atagcaacacctggtcgttt 379
             ||||||||||||||||||||
Sbjct: 53701 atagcaacacctggtcgttt 53720

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>emb|CR936486.7| Zebrafish DNA sequence from clone DKEY-279C17 in linkage group 5,
             complete sequence
          Length = 90069

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   atagcaacacctggtcgttt 379
             ||||||||||||||||||||
Sbjct: 10426 atagcaacacctggtcgttt 10445

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>gb|AC121576.2| Mus musculus BAC clone RP23-244D21 from 18, complete sequence
          Length = 158243

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    ttaagaaaggaagaagctat 166
              ||||||||||||||||||||
Sbjct: 124793 ttaagaaaggaagaagctat 124774

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>emb|AL603632.3| Human DNA sequence from clone RP11-323M24 on chromosome 13, complete
             sequence
          Length = 53337

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   aaaatttaagaaaggaagaa 161
             ||||||||||||||||||||
Sbjct: 22485 aaaatttaagaaaggaagaa 22504

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>emb|AL163832.1|ATF27K19 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19
          Length = 95111

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   aagaaaggaagaagctatgg 168
             ||||||||||||||||||||
Sbjct: 48059 aagaaaggaagaagctatgg 48078

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>emb|AL672143.12| Mouse DNA sequence from clone RP23-467P3 on chromosome 11 Contains part
             of a novel gene, complete sequence
          Length = 170167

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   caccagtgaccacacagtat 524
             ||||||||||||||||||||
Sbjct: 86280 caccagtgaccacacagtat 86261

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>gb|AC154492.2| Mus musculus BAC clone RP24-107B10 from chromosome 17, complete sequence
          Length = 172605

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 97     aaagtgggtctggcaagaca 116
              ||||||||||||||||||||
Sbjct: 130218 aaagtgggtctggcaagaca 130199

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>ref|NM_199882.1| Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (ddx23), mRNA
          Length = 3171

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  atagcaacacctggtcgttt 379
            ||||||||||||||||||||
Sbjct: 1593 atagcaacacctggtcgttt 1612

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>emb|BX571711.8| Zebrafish DNA sequence from clone DKEY-57L19 in linkage group 21,
              complete sequence
          Length = 193674

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 527    tttcgtcactgccactctcc 546
              ||||||||||||||||||||
Sbjct: 184168 tttcgtcactgccactctcc 184149

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>gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181207

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    ttcaaaatttaagaaaggaa 158
              ||||||||||||||||||||
Sbjct: 106898 ttcaaaatttaagaaaggaa 106879

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>gb|BC060524.1| Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, mRNA (cDNA
            clone MGC:63742 IMAGE:2639999), complete cds
          Length = 3171

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  atagcaacacctggtcgttt 379
            ||||||||||||||||||||
Sbjct: 1593 atagcaacacctggtcgttt 1612

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>ref|XM_697064.1| PREDICTED: Danio rerio hypothetical protein LOC554974 (LOC554974),
            mRNA
          Length = 3128

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  atagcaacacctggtcgttt 379
            ||||||||||||||||||||
Sbjct: 1592 atagcaacacctggtcgttt 1611

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>gb|AC093413.2| Homo sapiens chromosome 3 clone RP11-170K19, complete sequence
          Length = 175699

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 443    agtggatattttatttagtgaaga 466
              ||||||||||||||| ||||||||
Sbjct: 112886 agtggatattttattgagtgaaga 112863

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>gb|DP000034.1| Atelerix albiventris target 116 genomic scaffold
          Length = 230282

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    aaaatttaagaaaggaagaa 161
              ||||||||||||||||||||
Sbjct: 221629 aaaatttaagaaaggaagaa 221610

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>emb|AL953856.8| Zebrafish DNA sequence from clone DKEY-43F9 in linkage group 21, complete
              sequence
          Length = 156667

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 527    tttcgtcactgccactctcc 546
              ||||||||||||||||||||
Sbjct: 105746 tttcgtcactgccactctcc 105727

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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    cacaaaccatctcccaggaa 193
              ||||||||||||||||||||
Sbjct: 146497 cacaaaccatctcccaggaa 146478

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>emb|AL133500.4|HSP12 Homo sapiens  chromosome X sequence from BAC CEPHB328P12 map Xq13
            region PHKA1-DXS227, complete sequence
          Length = 201387

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  accatctcccaggaacccac 198
            ||||||||||||||||||||
Sbjct: 1382 accatctcccaggaacccac 1363

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>emb|AL807756.9| Mouse DNA sequence from clone RP23-36M9 on chromosome 4, complete
             sequence
          Length = 247528

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 143   aaatttaagaaaggaagaagctat 166
             ||||||||||||| ||||||||||
Sbjct: 10293 aaatttaagaaagaaagaagctat 10316

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>emb|AL671915.8| Mouse DNA sequence from clone RP23-182N4 on chromosome X, complete
             sequence
          Length = 171014

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   tttcatctcaggtccttcag 248
             ||||||||||||||||||||
Sbjct: 93147 tttcatctcaggtccttcag 93128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,981,468
Number of Sequences: 3902068
Number of extensions: 5981468
Number of successful extensions: 113743
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113592
Number of HSP's gapped (non-prelim): 151
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result