Clone Information

BLAST Search Result

Clone Name	bags12p02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|Y07636.1\|TAFKBP77 T.aestivum mRNA for peptidylprolyl isomerase	779	0.0
2	ref\|XM_472023.1\| Oryza sativa (japonica cultivar-group), predic...	369	6e-99
3	gb\|AF140495.2\| Oryza sativa (japonica cultivar-group) FK506-bind...	369	6e-99
4	dbj\|AK100844.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	369	6e-99
5	emb\|AL731624.3\|OSJN00266 Oryza sativa genomic DNA, chromosome 4,...	200	3e-48
6	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	200	3e-48
7	ref\|XM_465763.1\| Oryza sativa (japonica cultivar-group), mRNA	98	4e-17
8	dbj\|AK073233.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	98	4e-17
9	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
10	dbj\|AP005317.3\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
11	dbj\|AP004864.3\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
12	ref\|XM_483423.1\| Oryza sativa (japonica cultivar-group), mRNA	58	3e-05
13	dbj\|AK103172.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
14	gb\|AY389590.1\| Hyacinthus orientalis peptidyl-prolyl cis-trans i...	52	0.002
15	gb\|AC125482.9\| Medicago truncatula clone mth2-15h11, complete se...	46	0.12
16	gb\|AY104504.1\| Zea mays PCO127462 mRNA sequence	46	0.12
17	gb\|AY837844.1\| Bifidobacterium animalis subsp. animalis ATCC 255...	42	1.9
18	ref\|XM_879380.1\| PREDICTED: Bos taurus similar to Spectrin alpha...	42	1.9
19	ref\|XM_591545.2\| PREDICTED: Bos taurus similar to Spectrin alpha...	42	1.9
20	ref\|XM_879315.1\| PREDICTED: Bos taurus similar to Spectrin alpha...	42	1.9
21	ref\|XM_879281.1\| PREDICTED: Bos taurus similar to Spectrin alpha...	42	1.9
22	ref\|XM_879255.1\| PREDICTED: Bos taurus similar to Spectrin alpha...	42	1.9
23	ref\|XM_879225.1\| PREDICTED: Bos taurus similar to Spectrin alpha...	42	1.9
24	ref\|XM_879203.1\| PREDICTED: Bos taurus similar to Spectrin alpha...	42	1.9
25	ref\|XM_866848.1\| PREDICTED: Bos taurus similar to Spectrin alpha...	42	1.9
26	emb\|CR450788.7\| Zebrafish DNA sequence from clone DKEY-15P23 in ...	42	1.9
27	gb\|AC125347.2\| Mus musculus BAC clone RP24-136B2 from 5, complet...	42	1.9
28	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.9
29	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	42	1.9
30	gb\|AF497482.1\| Micromonospora echinospora calicheamicin biosynth...	42	1.9
31	dbj\|AP003888.4\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.9
32	ref\|NM_124233.2\| Arabidopsis thaliana FK506 binding / calmodulin...	40	7.3
33	gb\|AC099884.12\| Mus musculus chromosome 15, clone RP23-11F24, co...	40	7.3
34	gb\|AC113188.6\| Homo sapiens chromosome 8, clone CTD-2546M19, com...	40	7.3
35	gb\|AC160650.2\| Pan troglodytes BAC clone CH251-548K10 from chrom...	40	7.3
36	gb\|AC093423.2\| Homo sapiens chromosome 1 clone RP11-413E1, compl...	40	7.3
37	gb\|AC163744.3\| Pan troglodytes BAC clone CH251-376E11 from chrom...	40	7.3
38	dbj\|AB168189.1\| Macaca fascicularis testis cDNA clone: QtsA-1039...	40	7.3
39	gb\|AC175061.3\| Pan troglodytes BAC clone CH251-572M8 from chromo...	40	7.3
40	dbj\|AB015468.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	7.3
41	ref\|XM_319473.2\| Anopheles gambiae str. PEST ENSANGP00000014433 ...	40	7.3
42	gb\|AC007450.1\| Homo sapiens 12 BAC RP11-434C1 (Roswell Park Canc...	40	7.3
43	dbj\|AP006106.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	40	7.3
44	dbj\|AP004295.1\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	7.3

>emb|Y07636.1|TAFKBP77 T.aestivum mRNA for peptidylprolyl isomerase
          Length = 1999

 Score =  779 bits (393), Expect = 0.0
 Identities = 512/550 (93%), Gaps = 10/550 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    gccacaatatggttttggcgagcaaggnaaggccggcttctgaagttgaaggcgccgtgc 60
            ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 750  gccacaatatggttttggcgagcaagg-aagggcggctactgaagttgaaggcgccgtgc 808

                                                                        
Query: 61   ccccgaattccacattgcacatcgatcttgagctagtctcctggaagacggtcacactca 120
            ||||||||||||||||||||||||||||| ||||||| |||||||||||| | || ||||
Sbjct: 809  ccccgaattccacattgcacatcgatcttcagctagtttcctggaagacgcttaccctca 868

                                                                        
Query: 121  tcggtgacgacaagaggatcttgaagaaggtgctcaaggaaggagaaggctacgagcgcc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  tcggtgacgacaagaggatcttgaagaaggtgctcaaggaaggagaaggctacgagcgcc 928

                                                                        
Query: 181  ccaacgacggggcagttgtcagagtgagactgatcggcaagttggacaacggcaccgtgt 240
            ||||||| |||||||||||||||||| |||||||||||||||||||| | ||||| ||||
Sbjct: 929  ccaacgatggggcagttgtcagagtgggactgatcggcaagttggacgatggcactgtgt 988

                                                                        
Query: 241  tcacgaagaaaggacatgaaggcgacgaaccatttgagttcaagacggatgaggaacagg 300
            |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 989  tcacgaagaaaggacatgaaggcgacgaaccattcgagttcaagacggacgaggagcagg 1048

                                                                        
Query: 301  tcatcgaagggctcgatacgacggtggtcaccatgaagaaaggagaggtcgcgttagcta 360
            ||||| ||||||| || ||||||||| |||||||||||||||||||||  |||| |||||
Sbjct: 1049 tcatccaagggctggacacgacggtgctcaccatgaagaaaggagaggaggcgtcagcta 1108

                                                                        
Query: 361  gaataccacctgaacatgcgttcggatccactgagacg--------aagcttgatc-ttg 411
            ||||||||||||||||||||||||||||||| ||||||        |||||||||| |||
Sbjct: 1109 gaataccacctgaacatgcgttcggatccaccgagacgaagctatcaagcttgatctttg 1168

                                                                        
Query: 412  ctgtggttcctcctaactccaccgtcttctatgaagtggagcttgtttccttcgagaagg 471
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 ctgtggttcctcctaactcctccgtcttctatgaagtggagcttgtttccttcgagaagg 1228

                                                                        
Query: 472  agaaagaatcttgggacttgaagagcaatgctgagaagatcgaagcagcttctaagaaga 531
            ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||||
Sbjct: 1229 agaaagaatcttgggacttgaagagtaattctgagaagatcgaagcagcttctgaaaaga 1288

                      
Query: 532  aagatgaagg 541
            ||||||||||
Sbjct: 1289 aagatgaagg 1298

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>ref|XM_472023.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1758

 Score =  369 bits (186), Expect = 6e-99
 Identities = 453/541 (83%), Gaps = 1/541 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gccacaatatggttttggcgagcaaggnaaggccggcttctgaagttgaaggcgccgtgc 60
            |||||||||||| ||||| |||||||| ||  || ||||||| || |||||  || ||||
Sbjct: 714  gccacaatatggctttggtgagcaaggcaaa-ccagcttctggagctgaagctgctgtgc 772

                                                                        
Query: 61   ccccgaattccacattgcacatcgatcttgagctagtctcctggaagacggtcacactca 120
            | || ||| | ||  || || ||||||||||| |  ||||||||||||||||||| || |
Sbjct: 773  cgccaaatgctaccctgtacgtcgatcttgagttgctctcctggaagacggtcactctga 832

                                                                        
Query: 121  tcggtgacgacaagaggatcttgaagaaggtgctcaaggaaggagaaggctacgagcgcc 180
            |||| ||||| ||| | ||| ||||||| || ||||||||||| || ||||| |||||||
Sbjct: 833  tcggcgacgataagcgcatcctgaagaaagtcctcaaggaaggggagggctatgagcgcc 892

                                                                        
Query: 181  ccaacgacggggcagttgtcagagtgagactgatcggcaagttggacaacggcaccgtgt 240
            | ||||| || ||||| || ||||||||| | ||||||||||||||  ||||||| ||||
Sbjct: 893  ctaacgatggagcagtagttagagtgagatttatcggcaagttggaggacggcactgtgt 952

                                                                        
Query: 241  tcacgaagaaaggacatgaaggcgacgaaccatttgagttcaagacggatgaggaacagg 300
            |  | |||||||| ||||| || || || ||||||||||||| ||| |||||||| || |
Sbjct: 953  tttccaagaaagggcatgatggtgatgagccatttgagttcaggacagatgaggagcaag 1012

                                                                        
Query: 301  tcatcgaagggctcgatacgacggtggtcaccatgaagaaaggagaggtcgcgttagcta 360
            ||||||||||||| || |  || |||||||||||||||||||||||||| || || |  |
Sbjct: 1013 tcatcgaagggctggacagaactgtggtcaccatgaagaaaggagaggttgcattggtga 1072

                                                                        
Query: 361  gaataccacctgaacatgcgttcggatccactgagacgaagcttgatcttgctgtggttc 420
            || |||||||| ||||||| ||||||||||||||||| ||||  ||||||||||| ||||
Sbjct: 1073 gattaccacctcaacatgctttcggatccactgagactaagcaggatcttgctgttgttc 1132

                                                                        
Query: 421  ctcctaactccaccgtcttctatgaagtggagcttgtttccttcgagaaggagaaagaat 480
            || | |||||||| ||||  |||||||| |||||||| || |||||||||||||||||||
Sbjct: 1133 ctgcaaactccacagtctggtatgaagttgagcttgtctcattcgagaaggagaaagaat 1192

                                                                        
Query: 481  cttgggacttgaagagcaatgctgagaagatcgaagcagcttctaagaagaaagatgaag 540
            | ||||| ||||||  ||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 1193 catgggatttgaaggacaatgctgagaagattgaagcagctgccaagaagaaagatgaag 1252

             
Query: 541  g 541
            |
Sbjct: 1253 g 1253

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>gb|AF140495.2| Oryza sativa (japonica cultivar-group) FK506-binding protein mRNA,
            complete cds
          Length = 2233

 Score =  369 bits (186), Expect = 6e-99
 Identities = 453/541 (83%), Gaps = 1/541 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gccacaatatggttttggcgagcaaggnaaggccggcttctgaagttgaaggcgccgtgc 60
            |||||||||||| ||||| |||||||| ||  || ||||||| || |||||  || ||||
Sbjct: 797  gccacaatatggctttggtgagcaaggcaaa-ccagcttctggagctgaagctgctgtgc 855

                                                                        
Query: 61   ccccgaattccacattgcacatcgatcttgagctagtctcctggaagacggtcacactca 120
            | || ||| | ||  || || ||||||||||| |  ||||||||||||||||||| || |
Sbjct: 856  cgccaaatgctaccctgtacgtcgatcttgagttgctctcctggaagacggtcactctga 915

                                                                        
Query: 121  tcggtgacgacaagaggatcttgaagaaggtgctcaaggaaggagaaggctacgagcgcc 180
            |||| ||||| ||| | ||| ||||||| || ||||||||||| || ||||| |||||||
Sbjct: 916  tcggcgacgataagcgcatcctgaagaaagtcctcaaggaaggggagggctatgagcgcc 975

                                                                        
Query: 181  ccaacgacggggcagttgtcagagtgagactgatcggcaagttggacaacggcaccgtgt 240
            | ||||| || ||||| || ||||||||| | ||||||||||||||  ||||||| ||||
Sbjct: 976  ctaacgatggagcagtagttagagtgagatttatcggcaagttggaggacggcactgtgt 1035

                                                                        
Query: 241  tcacgaagaaaggacatgaaggcgacgaaccatttgagttcaagacggatgaggaacagg 300
            |  | |||||||| ||||| || || || ||||||||||||| ||| |||||||| || |
Sbjct: 1036 tttccaagaaagggcatgatggtgatgagccatttgagttcaggacagatgaggagcaag 1095

                                                                        
Query: 301  tcatcgaagggctcgatacgacggtggtcaccatgaagaaaggagaggtcgcgttagcta 360
            ||||||||||||| || |  || |||||||||||||||||||||||||| || || |  |
Sbjct: 1096 tcatcgaagggctggacagaactgtggtcaccatgaagaaaggagaggttgcattggtga 1155

                                                                        
Query: 361  gaataccacctgaacatgcgttcggatccactgagacgaagcttgatcttgctgtggttc 420
            || |||||||| ||||||| ||||||||||||||||| ||||  ||||||||||| ||||
Sbjct: 1156 gattaccacctcaacatgctttcggatccactgagactaagcaggatcttgctgttgttc 1215

                                                                        
Query: 421  ctcctaactccaccgtcttctatgaagtggagcttgtttccttcgagaaggagaaagaat 480
            || | |||||||| ||||  |||||||| |||||||| || |||||||||||||||||||
Sbjct: 1216 ctgcaaactccacagtctggtatgaagttgagcttgtctcattcgagaaggagaaagaat 1275

                                                                        
Query: 481  cttgggacttgaagagcaatgctgagaagatcgaagcagcttctaagaagaaagatgaag 540
            | ||||| ||||||  ||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 1276 catgggatttgaaggacaatgctgagaagattgaagcagctgccaagaagaaagatgaag 1335

             
Query: 541  g 541
            |
Sbjct: 1336 g 1336

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>dbj|AK100844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123G09, full
            insert sequence
          Length = 2162

 Score =  369 bits (186), Expect = 6e-99
 Identities = 453/541 (83%), Gaps = 1/541 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gccacaatatggttttggcgagcaaggnaaggccggcttctgaagttgaaggcgccgtgc 60
            |||||||||||| ||||| |||||||| ||  || ||||||| || |||||  || ||||
Sbjct: 800  gccacaatatggctttggtgagcaaggcaaa-ccagcttctggagctgaagctgctgtgc 858

                                                                        
Query: 61   ccccgaattccacattgcacatcgatcttgagctagtctcctggaagacggtcacactca 120
            | || ||| | ||  || || ||||||||||| |  ||||||||||||||||||| || |
Sbjct: 859  cgccaaatgctaccctgtacgtcgatcttgagttgctctcctggaagacggtcactctga 918

                                                                        
Query: 121  tcggtgacgacaagaggatcttgaagaaggtgctcaaggaaggagaaggctacgagcgcc 180
            |||| ||||| ||| | ||| ||||||| || ||||||||||| || ||||| |||||||
Sbjct: 919  tcggcgacgataagcgcatcctgaagaaagtcctcaaggaaggggagggctatgagcgcc 978

                                                                        
Query: 181  ccaacgacggggcagttgtcagagtgagactgatcggcaagttggacaacggcaccgtgt 240
            | ||||| || ||||| || ||||||||| | ||||||||||||||  ||||||| ||||
Sbjct: 979  ctaacgatggagcagtagttagagtgagatttatcggcaagttggaggacggcactgtgt 1038

                                                                        
Query: 241  tcacgaagaaaggacatgaaggcgacgaaccatttgagttcaagacggatgaggaacagg 300
            |  | |||||||| ||||| || || || ||||||||||||| ||| |||||||| || |
Sbjct: 1039 tttccaagaaagggcatgatggtgatgagccatttgagttcaggacagatgaggagcaag 1098

                                                                        
Query: 301  tcatcgaagggctcgatacgacggtggtcaccatgaagaaaggagaggtcgcgttagcta 360
            ||||||||||||| || |  || |||||||||||||||||||||||||| || || |  |
Sbjct: 1099 tcatcgaagggctggacagaactgtggtcaccatgaagaaaggagaggttgcattggtga 1158

                                                                        
Query: 361  gaataccacctgaacatgcgttcggatccactgagacgaagcttgatcttgctgtggttc 420
            || |||||||| ||||||| ||||||||||||||||| ||||  ||||||||||| ||||
Sbjct: 1159 gattaccacctcaacatgctttcggatccactgagactaagcaggatcttgctgttgttc 1218

                                                                        
Query: 421  ctcctaactccaccgtcttctatgaagtggagcttgtttccttcgagaaggagaaagaat 480
            || | |||||||| ||||  |||||||| |||||||| || |||||||||||||||||||
Sbjct: 1219 ctgcaaactccacagtctggtatgaagttgagcttgtctcattcgagaaggagaaagaat 1278

                                                                        
Query: 481  cttgggacttgaagagcaatgctgagaagatcgaagcagcttctaagaagaaagatgaag 540
            | ||||| ||||||  ||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct: 1279 catgggatttgaaggacaatgctgagaagattgaagcagctgccaagaagaaagatgaag 1338

             
Query: 541  g 541
            |
Sbjct: 1339 g 1339

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>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07,
             complete sequence
          Length = 138383

 Score =  200 bits (101), Expect = 3e-48
 Identities = 227/269 (84%)
 Strand = Plus / Minus

                                                                         
Query: 203   agtgagactgatcggcaagttggacaacggcaccgtgttcacgaagaaaggacatgaagg 262
             ||||||| | ||||||||||||||  ||||||| |||||  | |||||||| ||||| ||
Sbjct: 76593 agtgagatttatcggcaagttggaggacggcactgtgttttccaagaaagggcatgatgg 76534

                                                                         
Query: 263   cgacgaaccatttgagttcaagacggatgaggaacaggtcatcgaagggctcgatacgac 322
              || || ||||||||||||| ||| |||||||| || |||||||||||||| || |  ||
Sbjct: 76533 tgatgagccatttgagttcaggacagatgaggagcaagtcatcgaagggctggacagaac 76474

                                                                         
Query: 323   ggtggtcaccatgaagaaaggagaggtcgcgttagctagaataccacctgaacatgcgtt 382
              |||||||||||||||||||||||||| || || |  ||| |||||||| ||||||| ||
Sbjct: 76473 tgtggtcaccatgaagaaaggagaggttgcattggtgagattaccacctcaacatgcttt 76414

                                                                         
Query: 383   cggatccactgagacgaagcttgatcttgctgtggttcctcctaactccaccgtcttcta 442
             ||||||||||||||| ||||  ||||||||||| |||||| | |||||||| ||||  ||
Sbjct: 76413 cggatccactgagactaagcaggatcttgctgttgttcctgcaaactccacagtctggta 76354

                                          
Query: 443   tgaagtggagcttgtttccttcgagaagg 471
             |||||| |||||||| || ||||||||||
Sbjct: 76353 tgaagttgagcttgtctcattcgagaagg 76325



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                         
Query: 469   aggagaaagaatcttgggacttgaagagcaatgctgagaagatcgaagcagcttctaaga 528
             ||||||||||||| ||||| ||||||  ||||||||||||||| ||||||||| | ||||
Sbjct: 76240 aggagaaagaatcatgggatttgaaggacaatgctgagaagattgaagcagctgccaaga 76181

                          
Query: 529   agaaagatgaagg 541
             |||||||||||||
Sbjct: 76180 agaaagatgaagg 76168



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                         
Query: 82    tcgatcttgagctagtctcctggaagacggtcacactcatcggtgacgacaagaggatct 141
             ||||||||||| |  ||||||||||||||||||| || ||||| ||||| ||| | ||| 
Sbjct: 76812 tcgatcttgagttgctctcctggaagacggtcactctgatcggcgacgataagcgcatcc 76753

                                                                    
Query: 142   tgaagaaggtgctcaaggaaggagaaggctacgagcgccccaacgacggggcagt 196
             ||||||| || ||||||||||| || ||||| |||||||| ||||| || |||||
Sbjct: 76752 tgaagaaagtcctcaaggaaggggagggctatgagcgccctaacgatggagcagt 76698

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  200 bits (101), Expect = 3e-48
 Identities = 227/269 (84%)
 Strand = Plus / Minus

                                                                            
Query: 203      agtgagactgatcggcaagttggacaacggcaccgtgttcacgaagaaaggacatgaagg 262
                ||||||| | ||||||||||||||  ||||||| |||||  | |||||||| ||||| ||
Sbjct: 16826162 agtgagatttatcggcaagttggaggacggcactgtgttttccaagaaagggcatgatgg 16826103

                                                                            
Query: 263      cgacgaaccatttgagttcaagacggatgaggaacaggtcatcgaagggctcgatacgac 322
                 || || ||||||||||||| ||| |||||||| || |||||||||||||| || |  ||
Sbjct: 16826102 tgatgagccatttgagttcaggacagatgaggagcaagtcatcgaagggctggacagaac 16826043

                                                                            
Query: 323      ggtggtcaccatgaagaaaggagaggtcgcgttagctagaataccacctgaacatgcgtt 382
                 |||||||||||||||||||||||||| || || |  ||| |||||||| ||||||| ||
Sbjct: 16826042 tgtggtcaccatgaagaaaggagaggttgcattggtgagattaccacctcaacatgcttt 16825983

                                                                            
Query: 383      cggatccactgagacgaagcttgatcttgctgtggttcctcctaactccaccgtcttcta 442
                ||||||||||||||| ||||  ||||||||||| |||||| | |||||||| ||||  ||
Sbjct: 16825982 cggatccactgagactaagcaggatcttgctgttgttcctgcaaactccacagtctggta 16825923

                                             
Query: 443      tgaagtggagcttgtttccttcgagaagg 471
                |||||| |||||||| || ||||||||||
Sbjct: 16825922 tgaagttgagcttgtctcattcgagaagg 16825894



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                            
Query: 469      aggagaaagaatcttgggacttgaagagcaatgctgagaagatcgaagcagcttctaaga 528
                ||||||||||||| ||||| ||||||  ||||||||||||||| ||||||||| | ||||
Sbjct: 16825809 aggagaaagaatcatgggatttgaaggacaatgctgagaagattgaagcagctgccaaga 16825750

                             
Query: 529      agaaagatgaagg 541
                |||||||||||||
Sbjct: 16825749 agaaagatgaagg 16825737



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                            
Query: 82       tcgatcttgagctagtctcctggaagacggtcacactcatcggtgacgacaagaggatct 141
                ||||||||||| |  ||||||||||||||||||| || ||||| ||||| ||| | ||| 
Sbjct: 16826381 tcgatcttgagttgctctcctggaagacggtcactctgatcggcgacgataagcgcatcc 16826322

                                                                       
Query: 142      tgaagaaggtgctcaaggaaggagaaggctacgagcgccccaacgacggggcagt 196
                ||||||| || ||||||||||| || ||||| |||||||| ||||| || |||||
Sbjct: 16826321 tgaagaaagtcctcaaggaaggggagggctatgagcgccctaacgatggagcagt 16826267

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>ref|XM_465763.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2341

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                        
Query: 441  tatgaagtggagcttgtttccttcgagaaggagaaagaatcttgggacttgaagagcaat 500
            ||||| ||||||||||| |||||||| |||||||||||||| |||||| |||||   |||
Sbjct: 1355 tatgaggtggagcttgtgtccttcgataaggagaaagaatcatgggacatgaaggagaat 1414

                                                     
Query: 501  gctgagaagatcgaagcagcttctaagaagaaagatgaagg 541
             |||||||||| ||||| ||| | |||||||||||||||||
Sbjct: 1415 actgagaagattgaagcggctgcaaagaagaaagatgaagg 1455

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>dbj|AK073233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H01, full
            insert sequence
          Length = 2341

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 88/101 (87%)
 Strand = Plus / Plus

                                                                        
Query: 441  tatgaagtggagcttgtttccttcgagaaggagaaagaatcttgggacttgaagagcaat 500
            ||||| ||||||||||| |||||||| |||||||||||||| |||||| |||||   |||
Sbjct: 1355 tatgaggtggagcttgtgtccttcgataaggagaaagaatcatgggacatgaaggagaat 1414

                                                     
Query: 501  gctgagaagatcgaagcagcttctaagaagaaagatgaagg 541
             |||||||||| ||||| ||| | |||||||||||||||||
Sbjct: 1415 actgagaagattgaagcggctgcaaagaagaaagatgaagg 1455

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                            
Query: 469      aggagaaagaatcttgggacttgaagagcaatgctgagaagatcgaagcagcttctaaga 528
                ||||||||||||| |||||| |||||   ||| |||||||||| ||||| ||| | ||||
Sbjct: 17257884 aggagaaagaatcatgggacatgaaggagaatactgagaagattgaagcggctgcaaaga 17257825

                             
Query: 529      agaaagatgaagg 541
                |||||||||||||
Sbjct: 17257824 agaaagatgaagg 17257812

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>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0579G08
          Length = 164452

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                         
Query: 469   aggagaaagaatcttgggacttgaagagcaatgctgagaagatcgaagcagcttctaaga 528
             ||||||||||||| |||||| |||||   ||| |||||||||| ||||| ||| | ||||
Sbjct: 30567 aggagaaagaatcatgggacatgaaggagaatactgagaagattgaagcggctgcaaaga 30508

                          
Query: 529   agaaagatgaagg 541
             |||||||||||||
Sbjct: 30507 agaaagatgaagg 30495

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>dbj|AP004864.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0048K16
          Length = 159891

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                          
Query: 469    aggagaaagaatcttgggacttgaagagcaatgctgagaagatcgaagcagcttctaaga 528
              ||||||||||||| |||||| |||||   ||| |||||||||| ||||| ||| | ||||
Sbjct: 128651 aggagaaagaatcatgggacatgaaggagaatactgagaagattgaagcggctgcaaaga 128592

                           
Query: 529    agaaagatgaagg 541
              |||||||||||||
Sbjct: 128591 agaaagatgaagg 128579

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>ref|XM_483423.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2100

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                 
Query: 441  tatgaagtggagcttgtttccttcgagaaggagaaagaatcttgggacttgaa 493
            ||||| || |||||||| || |||| |||||| ||||||||||||||||||||
Sbjct: 1248 tatgaggttgagcttgtatcattcgtgaaggataaagaatcttgggacttgaa 1300

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>dbj|AK103172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121G16, full
            insert sequence
          Length = 2100

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                 
Query: 441  tatgaagtggagcttgtttccttcgagaaggagaaagaatcttgggacttgaa 493
            ||||| || |||||||| || |||| |||||| ||||||||||||||||||||
Sbjct: 1248 tatgaggttgagcttgtatcattcgtgaaggataaagaatcttgggacttgaa 1300

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>gb|AY389590.1| Hyacinthus orientalis peptidyl-prolyl cis-trans isomerase mRNA,
           partial cds
          Length = 648

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                       
Query: 408 cttgctgtggttcctcctaactccaccgtcttctatgaagtggagcttgtttccttcgag 467
           |||||| |||||||||| ||||| || ||  | |||||  | |||||||| ||||| | |
Sbjct: 527 cttgctctggttcctccaaactctactgttatttatgagattgagcttgtgtcctttgtg 586

                                     
Query: 468 aaggagaaagaatcttgggacttgaa 493
           ||||| ||||||||||||||| ||||
Sbjct: 587 aaggaaaaagaatcttgggacatgaa 612



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 60  cccccgaattccacattgcacatcgatcttgagctagtctcctggaagac 109
           ||||| ||| |||| |||||| | ||||||||||| ||||||||||||||
Sbjct: 179 cccccaaatgccaccttgcacgttgatcttgagcttgtctcctggaagac 228

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>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence
          Length = 129658

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 327   gtcaccatgaagaaaggagaggt 349
             |||||||||||||||||||||||
Sbjct: 48648 gtcaccatgaagaaaggagaggt 48670

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>gb|AY104504.1| Zea mays PCO127462 mRNA sequence
          Length = 2108

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 109/137 (79%), Gaps = 3/137 (2%)
 Strand = Plus / Plus

                                                                        
Query: 405  gatcttgctgtggttcctcctaactccaccgtcttctatgaagtggagcttgtttccttc 464
            ||||||||||| ||||| ||||||  ||| ||  | |||||||| |||||| |||| || 
Sbjct: 1239 gatcttgctgttgttccacctaacagcacagtaatatatgaagttgagcttatttcattt 1298

                                                                        
Query: 465  gagaaggagaaagaatcttgggacttgaagagcaatgctgagaagatcgaagcagcttct 524
            | |||||| || || || |||||||||||   |||||  |||||||| || || |||  |
Sbjct: 1299 gtgaaggacaaggagtcgtgggacttgaa---caatgaagagaagattgaggctgctggt 1355

                             
Query: 525  aagaagaaagatgaagg 541
            ||||||||||| |||||
Sbjct: 1356 aagaagaaagaggaagg 1372

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>gb|AY837844.1| Bifidobacterium animalis subsp. animalis ATCC 25527 UspA (uspA), ClpC
            (clpC), and AspRS (aspRS) genes, complete cds
          Length = 5958

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 140  cttgaagaaggtgctcaagga 160
            |||||||||||||||||||||
Sbjct: 2098 cttgaagaaggtgctcaagga 2118

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>ref|XM_879380.1| PREDICTED: Bos taurus similar to Spectrin alpha chain, brain
            (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin)
            (Fodrin alpha chain), transcript variant 10 (LOC540108),
            mRNA
          Length = 7624

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ggtcaccatgaagaaaggaga 346
            |||||||||||||||||||||
Sbjct: 2961 ggtcaccatgaagaaaggaga 2981

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>ref|XM_591545.2| PREDICTED: Bos taurus similar to Spectrin alpha chain, brain
            (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin)
            (Fodrin alpha chain), transcript variant 1 (LOC540108),
            mRNA
          Length = 7735

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ggtcaccatgaagaaaggaga 346
            |||||||||||||||||||||
Sbjct: 2925 ggtcaccatgaagaaaggaga 2945

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>ref|XM_879315.1| PREDICTED: Bos taurus similar to Spectrin alpha chain, brain
            (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin)
            (Fodrin alpha chain), transcript variant 9 (LOC540108),
            mRNA
          Length = 7783

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ggtcaccatgaagaaaggaga 346
            |||||||||||||||||||||
Sbjct: 2961 ggtcaccatgaagaaaggaga 2981

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>ref|XM_879281.1| PREDICTED: Bos taurus similar to Spectrin alpha chain, brain
            (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin)
            (Fodrin alpha chain), transcript variant 8 (LOC540108),
            mRNA
          Length = 7591

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ggtcaccatgaagaaaggaga 346
            |||||||||||||||||||||
Sbjct: 2961 ggtcaccatgaagaaaggaga 2981

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>ref|XM_879255.1| PREDICTED: Bos taurus similar to Spectrin alpha chain, brain
            (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin)
            (Fodrin alpha chain), transcript variant 7 (LOC540108),
            mRNA
          Length = 7594

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ggtcaccatgaagaaaggaga 346
            |||||||||||||||||||||
Sbjct: 2964 ggtcaccatgaagaaaggaga 2984

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>ref|XM_879225.1| PREDICTED: Bos taurus similar to Spectrin alpha chain, brain
            (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin)
            (Fodrin alpha chain), transcript variant 6 (LOC540108),
            mRNA
          Length = 7849

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ggtcaccatgaagaaaggaga 346
            |||||||||||||||||||||
Sbjct: 2961 ggtcaccatgaagaaaggaga 2981

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>ref|XM_879203.1| PREDICTED: Bos taurus similar to Spectrin alpha chain, brain
            (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin)
            (Fodrin alpha chain), transcript variant 5 (LOC540108),
            mRNA
          Length = 5014

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ggtcaccatgaagaaaggaga 346
            |||||||||||||||||||||
Sbjct: 2961 ggtcaccatgaagaaaggaga 2981

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>ref|XM_866848.1| PREDICTED: Bos taurus similar to Spectrin alpha chain, brain
            (Spectrin, non-erythroid alpha chain) (Alpha-II spectrin)
            (Fodrin alpha chain), transcript variant 2 (LOC540108),
            mRNA
          Length = 7771

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ggtcaccatgaagaaaggaga 346
            |||||||||||||||||||||
Sbjct: 2961 ggtcaccatgaagaaaggaga 2981

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>emb|CR450788.7| Zebrafish DNA sequence from clone DKEY-15P23 in linkage group 12,
              complete sequence
          Length = 115480

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 263    cgacgaaccatttgagttcaa 283
              |||||||||||||||||||||
Sbjct: 111705 cgacgaaccatttgagttcaa 111685

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>gb|AC125347.2| Mus musculus BAC clone RP24-136B2 from 5, complete sequence
          Length = 130354

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   gatcttgaagaaggtgctcaa 157
             |||||||||||||||||||||
Sbjct: 56882 gatcttgaagaaggtgctcaa 56862

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 469      aggagaaagaatcttgggacttgaa 493
                |||| ||||||||||||||||||||
Sbjct: 26134563 aggataaagaatcttgggacttgaa 26134587

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 53      cgccgtgcccccgaattccac 73
               |||||||||||||||||||||
Sbjct: 7860181 cgccgtgcccccgaattccac 7860161

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>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete
             sequence
          Length = 90348

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   cttgaagaaggtgctcaagga 160
             |||||||||||||||||||||
Sbjct: 26216 cttgaagaaggtgctcaagga 26196

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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 469   aggagaaagaatcttgggacttgaa 493
             |||| ||||||||||||||||||||
Sbjct: 78494 aggataaagaatcttgggacttgaa 78518

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>ref|NM_124233.2| Arabidopsis thaliana FK506 binding / calmodulin binding /
            peptidyl-prolyl cis-trans isomerase AT5G48570 mRNA,
            complete cds
          Length = 2130

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 153  ctcaaggaaggagaaggctacgagcgccccaa 184
            ||||||||||||||||| || ||||| |||||
Sbjct: 1048 ctcaaggaaggagaaggatatgagcgtcccaa 1079

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>gb|AC099884.12| Mus musculus chromosome 15, clone RP23-11F24, complete sequence
          Length = 265797

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   gagaaggagaaagaatcttg 484
             ||||||||||||||||||||
Sbjct: 26323 gagaaggagaaagaatcttg 26304

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>gb|AC113188.6| Homo sapiens chromosome 8, clone CTD-2546M19, complete sequence
          Length = 194602

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 472   agaaagaatcttgggacttgaaga 495
             |||||||||||||| |||||||||
Sbjct: 37641 agaaagaatcttggaacttgaaga 37664

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>gb|AC160650.2| Pan troglodytes BAC clone CH251-548K10 from chromosome unknown,
             complete sequence
          Length = 184125

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 472   agaaagaatcttgggacttgaaga 495
             |||||||||||||| |||||||||
Sbjct: 51926 agaaagaatcttggaacttgaaga 51949

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>gb|AC093423.2| Homo sapiens chromosome 1 clone RP11-413E1, complete sequence
          Length = 185182

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 139    tcttgaagaaggtgctcaaggaag 162
              |||||||||| |||||||||||||
Sbjct: 111956 tcttgaagaatgtgctcaaggaag 111979

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>gb|AC163744.3| Pan troglodytes BAC clone CH251-376E11 from chromosome unknown,
             complete sequence
          Length = 195342

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 472   agaaagaatcttgggacttgaaga 495
             |||||||||||||| |||||||||
Sbjct: 54708 agaaagaatcttggaacttgaaga 54685

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>dbj|AB168189.1| Macaca fascicularis testis cDNA clone: QtsA-10394, similar to human
           hypothetical protein GL009 (GL009), mRNA, RefSeq:
           NM_032492.2
          Length = 1737

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 472 agaaagaatcttgggacttgaaga 495
           |||||||||||||| |||||||||
Sbjct: 905 agaaagaatcttggaacttgaaga 928

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>gb|AC175061.3| Pan troglodytes BAC clone CH251-572M8 from chromosome unknown, complete
              sequence
          Length = 191409

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 472    agaaagaatcttgggacttgaaga 495
              |||||||||||||| |||||||||
Sbjct: 152413 agaaagaatcttggaacttgaaga 152436

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>dbj|AB015468.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15N18
          Length = 66084

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 153   ctcaaggaaggagaaggctacgagcgccccaa 184
             ||||||||||||||||| || ||||| |||||
Sbjct: 13357 ctcaaggaaggagaaggatatgagcgtcccaa 13326

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>ref|XM_319473.2| Anopheles gambiae str. PEST ENSANGP00000014433
           (ENSANGG00000011944), partial mRNA
          Length = 1296

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 aagacggtcacactcatcgg 124
           ||||||||||||||||||||
Sbjct: 462 aagacggtcacactcatcgg 443

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>gb|AC007450.1| Homo sapiens 12 BAC RP11-434C1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 210779

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 472    agaaagaatcttgggacttgaaga 495
              |||||||||||||| |||||||||
Sbjct: 120928 agaaagaatcttggaacttgaaga 120951

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>dbj|AP006106.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40L14, TM0192,
             complete sequence
          Length = 109465

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   gtggttcctcctaactccac 433
             ||||||||||||||||||||
Sbjct: 15459 gtggttcctcctaactccac 15440

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>dbj|AP004295.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1907E5
          Length = 154597

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 472    agaaagaatcttgggacttgaaga 495
              |||||||||||||| |||||||||
Sbjct: 127519 agaaagaatcttggaacttgaaga 127542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,067,791
Number of Sequences: 3902068
Number of extensions: 5067791
Number of successful extensions: 89338
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 89122
Number of HSP's gapped (non-prelim): 214
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result