>DDX28_MOUSE (Q9CWT6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)|
           (Mitochondrial DEAD box protein 28)
          Length = 540

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 244 RWRHSPAATTSMTAQNSGEQHFGCSGISIERPALXE-SSRG 125
           RW  +P A+     + S + HF    +  E PAL   SSRG
Sbjct: 86  RWERAPLASRGWKHRRSRQDHFSIERVQQEAPALRNLSSRG 126

>ACON_HUMAN (Q99798) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)|
           (Citrate hydro-lyase) (Aconitase)
          Length = 780

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 163 SIERPALXESSRGLEGILLEDACWQELGHWD 71
           +IER    +  R L GI+L +AC   +G WD
Sbjct: 426 TIERDGYAQILRDLGGIVLANACGPCIGQWD 456

>KR73_ICHV1 (Q00094) Gene 73 protein kinase (EC 2.7.11.1)|
          Length = 962

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 113 TARGCLLARTGPLGCIHMGKFC 48
           T RG L+A+ G LGC   G FC
Sbjct: 444 TNRGRLVAKLGDLGCCSKGAFC 465

>LGRD_BREPA (Q70LM4) Linear gramicidin synthetase subunit D [Includes:|
            ATP-dependent tryptophan adenylase (TrpA) (Tryptophan
            activase); ATP-dependent D-leucine adenylase (D-LeuA)
            (D-Leucine activase); Leucine racemase [ATP-hydrolyzing]
            (EC 5.1.1.-); ATP-d
          Length = 5085

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 10   APPPAARFASVLRQNLPMWMHPSGPVLASKHPRAVS 117
            A PPA   A  L++ LP +M P+G V     P  V+
Sbjct: 903  AQPPAEEIALFLKETLPEYMVPAGVVWLDAIPLTVN 938

>ACON_PIG (P16276) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)|
           (Citrate hydro-lyase) (Aconitase)
          Length = 781

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 163 SIERPALXESSRGLEGILLEDACWQELGHWD 71
           +IER    +  R + GI+L +AC   +G WD
Sbjct: 426 TIERDGYAQVLRDVGGIVLANACGPCIGQWD 456

>RAE1L_ARATH (Q38942) Rae1-like protein At1g80670|
          Length = 349

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 242 VEALAGGHHIDDSSKLRRAAFRVQRD 165
           +E   G HH+DDS + +   F+  RD
Sbjct: 217 IEGRVGVHHLDDSQQSKNFTFKCHRD 242

>ACON_RAT (Q9ER34) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)|
           (Citrate hydro-lyase) (Aconitase)
          Length = 780

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 163 SIERPALXESSRGLEGILLEDACWQELGHWD 71
           +IER    +  R + GI+L +AC   +G WD
Sbjct: 426 TIERDGYAQILRDVGGIVLANACGPCIGQWD 456

>ACON_MOUSE (Q99KI0) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)|
           (Citrate hydro-lyase) (Aconitase)
          Length = 780

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 163 SIERPALXESSRGLEGILLEDACWQELGHWD 71
           +IER    +  R + GI+L +AC   +G WD
Sbjct: 426 TIERDGYAQILRDVGGIVLANACGPCIGQWD 456

>ACON_BOVIN (P20004) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)|
           (Citrate hydro-lyase) (Aconitase)
          Length = 780

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 163 SIERPALXESSRGLEGILLEDACWQELGHWD 71
           +IER    +  R + GI+L +AC   +G WD
Sbjct: 426 TIERDGYAQILRDVGGIVLANACGPCIGQWD 456


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,218,188
Number of Sequences: 219361
Number of extensions: 573270
Number of successful extensions: 2401
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2401
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)