ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12o20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ128061.1| Triticum aestivum clone p8-2, genomic sequence 76 1e-10
2gb|DQ128056.1| Triticum aestivum clone p3-5, genomic sequence 76 1e-10
3gb|DQ128046.1| Triticum aestivum clone P4-6 Ty3/gypsy-like retro... 76 1e-10
4gb|DQ128041.1| Triticum aestivum clone A4-5 Ty3/gypsy-like retro... 76 1e-10
5gb|DQ128037.1| Triticum aestivum clone A3-6 Ty3/gypsy-like retro... 76 1e-10
6gb|DQ128035.1| Triticum aestivum clone A3-4 Ty3/gypsy-like retro... 76 1e-10
7gb|DQ128034.1| Triticum aestivum clone A3-3 Ty3/gypsy-like retro... 76 1e-10
8gb|DQ128021.1| Triticum aestivum clone A4-6 NBS-LRR type RGA gen... 72 2e-09
9gb|DQ128063.1| Triticum monococcum clone tm3-1, genomic sequence 68 3e-08
10gb|DQ128062.1| Triticum monococcum clone p8-3, genomic sequence 68 3e-08
11gb|DQ128055.1| Triticum aestivum clone p3-3, genomic sequence 68 3e-08
12gb|DQ145754.1| Triticum aestivum clone A3-3, genomic sequence 68 3e-08
13gb|DQ128047.1| Triticum aestivum clone P8-1 Ty3/gypsy-like retro... 68 3e-08
14gb|DQ128042.1| Triticum aestivum clone A6-6 Ty3/gypsy-like retro... 68 3e-08
15gb|DQ128039.1| Triticum aestivum clone A4-3 Ty3/gypsy-like retro... 68 3e-08
16gb|DQ128038.1| Triticum aestivum clone A4-1 Ty3/gypsy-like retro... 68 3e-08
17gb|DQ128033.1| Triticum aestivum clone A2-6 Ty3/gypsy-like retro... 68 3e-08
18gb|DQ128045.1| Triticum aestivum clone P4-4 Ty3/gypsy-like retro... 62 2e-06
19gb|DQ128044.1| Triticum aestivum clone A8-5 Ty3/gypsy-like retro... 60 7e-06
20gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retro... 52 0.002
21gb|DQ128043.1| Triticum aestivum clone A8-1 Ty3/gypsy-like retro... 50 0.007
22ref|NM_194046.1| Oryza sativa (japonica cultivar-group), predic... 42 1.7
23gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
27dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
28gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
29emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.7
30gb|AC165948.2| Mus musculus BAC clone RP24-430M9 from chromosome... 40 6.9
31ref|NM_152807.1| Mus musculus RIKEN cDNA 3110023B02 gene (311002... 40 6.9
32gb|BC106357.1| Xenopus laevis cDNA clone MGC:130905 IMAGE:739170... 40 6.9
33ref|XM_360348.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.9
34gb|AE006144.1| Pasteurella multocida subsp. multocida str. Pm70 ... 40 6.9
35gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.9
36gb|BC026662.1| Mus musculus RIKEN cDNA 3110023B02 gene, mRNA (cD... 40 6.9
37emb|AL160152.20| Human DNA sequence from clone RP11-360H15 on ch... 40 6.9
38gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
39emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, stra... 40 6.9
40emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chrom... 40 6.9
41emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 i... 40 6.9
42gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.9
43gb|AF453394.1| Potato leafroll virus strain 14.2, complete genome 40 6.9
44dbj|AK156682.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 6.9
45dbj|AK013412.1| Mus musculus 10, 11 days embryo whole body cDNA,... 40 6.9
46gb|AC000078.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 33e ... 40 6.9
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
48gb|AC068552.6| Homo sapiens BAC clone RP11-743I4 from 2, complet... 40 6.9
49gb|AF282677.1|AF282677 Agrobacterium radiobacter strain S2 putat... 40 6.9
50dbj|AK174009.1| Ciona intestinalis cDNA, clone:ciad013p11, full ... 40 6.9
51gb|AC153863.6| Mus musculus 10 BAC RP23-149M7 (Roswell Park Canc... 40 6.9
52gb|BT021312.1| Drosophila melanogaster RE14947 full insert cDNA 40 6.9
53gb|AC165951.3| Mus musculus BAC clone RP24-137B13 from chromosom... 40 6.9
54emb|AL669855.20| Mouse DNA sequence from clone RP23-82I5 on chro... 40 6.9
55dbj|AB051439.1| Homo sapiens mRNA for KIAA1652 protein, partial cds 40 6.9 
>gb|DQ128061.1| Triticum aestivum clone p8-2, genomic sequence
          Length = 248

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||||| ||||||||||||| |  |||||||||||||| ||
Sbjct: 45  gaaggcgatctcatggatgaagagtttgatagcgagtccgacacctagaggagtcccagt 104

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 105 cagtct 110
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>gb|DQ128056.1| Triticum aestivum clone p3-5, genomic sequence
          Length = 374

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||||| ||||||||||||| |  |||||||||||||| ||
Sbjct: 290 gaaggtgatctcatggatgaagagtttgatagcgagtccgacacctagaggagtcccagt 349

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 350 cagtct 355
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>gb|DQ128046.1| Triticum aestivum clone P4-6 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 494

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||||| ||||||||||||| |  |||||||||||||| ||
Sbjct: 291 gaaggcgatctcatggatgaagagtttgatagcgagtccgacacctagaggagtcccagt 350

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 351 cagtct 356
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>gb|DQ128041.1| Triticum aestivum clone A4-5 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 487

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||| | ||||||||||||| | ||||||||||||||| ||
Sbjct: 284 gaaggcgatctcatggatgaagaatttgatagcgagtccgacgcctagaggagtcccagt 343

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 344 cagtct 349
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>gb|DQ128037.1| Triticum aestivum clone A3-6 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 488

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||||| ||||||||||||| |  |||||||||||||| ||
Sbjct: 285 gaaggcgatctcatggatgaagagtttgatagcgagtccgacacctagaggagtcccagt 344

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 345 cagtct 350
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>gb|DQ128035.1| Triticum aestivum clone A3-4 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 486

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||| ||||||||||||||  | ||||||||||||||| ||
Sbjct: 283 gaaggcgatctcatggatgaagaatatgatagcgagtctgacgcctagaggagtcccagt 342

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 343 cagtct 348
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>gb|DQ128034.1| Triticum aestivum clone A3-3 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 342

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||||| ||||||||||||| |  |||||||||||||| ||
Sbjct: 139 gaaggcgatctcatggatgaagagtttgatagcgagtccgacacctagaggagtcccagt 198

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 199 cagtct 204
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>gb|DQ128021.1| Triticum aestivum clone A4-6 NBS-LRR type RGA gene, partial cds
          Length = 194

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                   
Query: 449 tcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggtcagtct 504
           ||||||||||||||| ||||||||||||| |  |||||||||||||| ||||||||
Sbjct: 194 tcatggatgaagagtttgatagcgagtccgacacctagaggagtcccagtcagtct 139
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>gb|DQ128063.1| Triticum monococcum clone tm3-1, genomic sequence
          Length = 499

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || ||||||||||||||||  |||||||||||| | |||||||||| |||| ||
Sbjct: 295 gaaggtgatctcatggatgaagagttcgatagcgagtccgacgcctagaggaatcccagt 354

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 355 cagtct 360
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>gb|DQ128062.1| Triticum monococcum clone p8-3, genomic sequence
          Length = 474

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || ||||||||||||||||  |||||||||||| | |||||||||| |||| ||
Sbjct: 295 gaaggtgatctcatggatgaagagttcgatagcgagtccgacgcctagaggaatcccagt 354

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 355 cagtct 360
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>gb|DQ128055.1| Triticum aestivum clone p3-3, genomic sequence
          Length = 484

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || ||||||||||| || | ||||||||||||| | ||||||||||||||| ||
Sbjct: 286 gaaggcgatctcatggatgaggaatttgatagcgagtccgacgcctagaggagtcccagt 345

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 346 cagtct 351
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>gb|DQ145754.1| Triticum aestivum clone A3-3, genomic sequence
          Length = 493

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||||| |||||| |||||| |  |||||||||||||| ||
Sbjct: 290 gaaggcgatctcatggatgaagagtttgatagtgagtccgacacctagaggagtcccagt 349

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 350 cagtct 355
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>gb|DQ128047.1| Triticum aestivum clone P8-1 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 473

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||| | ||||||||||||| |  |||||||||||||| ||
Sbjct: 290 gaaggcgatctcatggatgaagaatttgatagcgagtccgacacctagaggagtcccagt 349

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 350 cagtct 355
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>gb|DQ128042.1| Triticum aestivum clone A6-6 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 336

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||||| ||||||||||||| |  |||||||||||||| | 
Sbjct: 133 gaaggcgatctcatggatgaagagtttgatagcgagtccgacacctagaggagtcccagc 192

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 193 cagtct 198
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>gb|DQ128039.1| Triticum aestivum clone A4-3 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 490

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||| | ||||||||||||| | ||||||||||||||| ||
Sbjct: 287 gaaggcgatctcatggatgaagaatttgatagcgagtccgacgcctagaggagtcccagt 346

                 
Query: 499 cagtct 504
           | ||||
Sbjct: 347 cggtct 352
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>gb|DQ128038.1| Triticum aestivum clone A4-1 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 410

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||||| ||||||||||||| |  ||||| |||||||| ||
Sbjct: 208 gaaggcgatctcatggatgaagagtttgatagcgagtccgacacctagtggagtcccagt 267

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 268 cagtct 273
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>gb|DQ128033.1| Triticum aestivum clone A2-6 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 258

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || |||||||||||||| | ||||||||||||| | ||||||||||||||| ||
Sbjct: 55  gaaggcgatctcatggatgaagaatttgatagcgagtccgacgcctagaggagtcccagt 114

                 
Query: 499 cagtct 504
            |||||
Sbjct: 115 tagtct 120
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>gb|DQ128045.1| Triticum aestivum clone P4-4 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 250

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 59/67 (88%), Gaps = 1/67 (1%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtcc-aatgcctagaggagtcccgg 497
           ||||| || |||||||||||||||| ||||||||||||| ||  | |||||||||||| |
Sbjct: 46  gaaggcgatctcatggatgaagagtttgatagcgagtccgaacacttagaggagtcccag 105

                  
Query: 498 tcagtct 504
           |||||||
Sbjct: 106 tcagtct 112
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>gb|DQ128044.1| Triticum aestivum clone A8-5 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 262

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagt 492
           ||||| || |||||||||||||||| ||||||||||||| |  |||||||||||
Sbjct: 59  gaaggcgatctcatggatgaagagtttgatagcgagtccgacacctagaggagt 112
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>gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 470

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                       
Query: 439 gaaggagacctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggt 498
           ||||| || ||||||||||||||||   ||||||||| | | |||||||||| |||| ||
Sbjct: 285 gaaggcgatctcatggatgaagagttcaatagcgagttcgacgcctagaggaatcccagt 344

                 
Query: 499 cagtct 504
           ||||||
Sbjct: 345 cagtct 350
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>gb|DQ128043.1| Triticum aestivum clone A8-1 Ty3/gypsy-like retrotransposon,
           partial sequence
          Length = 239

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 448 ctcatggatgaagagtatgatagcgagtccaatgcctagaggagtcccggtcagtct 504
           ||||||||||||||||   ||||||||| | | |||||||||| |||| ||||||||
Sbjct: 63  ctcatggatgaagagttcaatagcgagttcgacgcctagaggaatcccagtcagtct 119
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>ref|NM_194046.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 354

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 243 cctccacctccatcagctgca 263
           |||||||||||||||||||||
Sbjct: 41  cctccacctccatcagctgca 61
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>gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1171_H02,
             complete sequence
          Length = 109969

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 243   cctccacctccatcagctgca 263
             |||||||||||||||||||||
Sbjct: 52667 cctccacctccatcagctgca 52687
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 243      cctccacctccatcagctgca 263
                |||||||||||||||||||||
Sbjct: 10261773 cctccacctccatcagctgca 10261753
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 243     cctccacctccatcagctgca 263
               |||||||||||||||||||||
Sbjct: 9070670 cctccacctccatcagctgca 9070690
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 243      cctccacctccatcagctgca 263
                |||||||||||||||||||||
Sbjct: 14958213 cctccacctccatcagctgca 14958233
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>dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0697D09
          Length = 158479

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 243    cctccacctccatcagctgca 263
              |||||||||||||||||||||
Sbjct: 143039 cctccacctccatcagctgca 143059
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 243      cctccacctccatcagctgca 263
                |||||||||||||||||||||
Sbjct: 10261655 cctccacctccatcagctgca 10261635
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>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135439

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   cctccacctccatcagctgca 263
             |||||||||||||||||||||
Sbjct: 24692 cctccacctccatcagctgca 24672
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>gb|AC165948.2| Mus musculus BAC clone RP24-430M9 from chromosome 17, complete sequence
          Length = 176267

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 430   ttccagagtgaaggagacct 449
             ||||||||||||||||||||
Sbjct: 97740 ttccagagtgaaggagacct 97721
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>ref|NM_152807.1| Mus musculus RIKEN cDNA 3110023B02 gene (3110023B02Rik), mRNA
          Length = 2799

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  gtgcattttccagagtgaag 442
            ||||||||||||||||||||
Sbjct: 1745 gtgcattttccagagtgaag 1764
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>gb|BC106357.1| Xenopus laevis cDNA clone MGC:130905 IMAGE:7391702, complete cds
          Length = 1875

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 411 catttttctgaagtgcattttcca 434
           ||||||||| ||||||||||||||
Sbjct: 406 catttttctcaagtgcattttcca 383
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>ref|XM_360348.1| Magnaporthe grisea 70-15 hypothetical protein (MG05722.4) partial
           mRNA
          Length = 1965

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 79  atcccagtggcccagttctt 98
           ||||||||||||||||||||
Sbjct: 879 atcccagtggcccagttctt 898
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>gb|AE006144.1| Pasteurella multocida subsp. multocida str. Pm70 section 111 of 204
            of the complete genome
          Length = 11505

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   aaatttgcccatgtggatgc 78
            ||||||||||||||||||||
Sbjct: 5782 aaatttgcccatgtggatgc 5801
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 244      ctccacctccatcagctgca 263
                ||||||||||||||||||||
Sbjct: 10481035 ctccacctccatcagctgca 10481054
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>gb|BC026662.1| Mus musculus RIKEN cDNA 3110023B02 gene, mRNA (cDNA clone MGC:37602
            IMAGE:4989084), complete cds
          Length = 2799

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  gtgcattttccagagtgaag 442
            ||||||||||||||||||||
Sbjct: 1745 gtgcattttccagagtgaag 1764
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>emb|AL160152.20| Human DNA sequence from clone RP11-360H15 on chromosome 13, complete
             sequence
          Length = 175151

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gctgcagaacctccttgtga 277
             ||||||||||||||||||||
Sbjct: 56750 gctgcagaacctccttgtga 56769
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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10,
              complete sequence
          Length = 139714

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    ctccacctccatcagctgca 263
              ||||||||||||||||||||
Sbjct: 137588 ctccacctccatcagctgca 137607
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>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11
          Length = 344249

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    ctccacctccatcagctgca 263
              ||||||||||||||||||||
Sbjct: 327214 ctccacctccatcagctgca 327195
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>emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chromosome 4, complete
             sequence
          Length = 149318

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   cctccacctccatcagctgc 262
             ||||||||||||||||||||
Sbjct: 58674 cctccacctccatcagctgc 58655
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>emb|AL929014.28| Zebrafish DNA sequence from clone CH211-198B3 in linkage group 20
             Contains the gene for a novel protein similar to
             vertebrate fibronectin type III domain containing 1
             (FNDC1), the 5' end of the gene for a novel protein
             similar to vertebrate otoferlin (OTOF), a novel gene and
             two CpG islands, complete sequence
          Length = 163523

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    tcccagtggcccagttcttg 99
             ||||||||||||||||||||
Sbjct: 29080 tcccagtggcccagttcttg 29061
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>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0036G02, from chromosome 3, complete sequence
          Length = 153308

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   ctccacctccatcagctgca 263
             ||||||||||||||||||||
Sbjct: 36848 ctccacctccatcagctgca 36867
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>gb|AF453394.1| Potato leafroll virus strain 14.2, complete genome
          Length = 5865

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   gcccagttcttgccagcaag 107
            ||||||||||||||||||||
Sbjct: 1502 gcccagttcttgccagcaag 1483
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>dbj|AK156682.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830037D08 product:hypothetical protein,
            full insert sequence
          Length = 2168

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 423  gtgcattttccagagtgaag 442
            ||||||||||||||||||||
Sbjct: 1752 gtgcattttccagagtgaag 1771
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>dbj|AK013412.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810477C15
           product:unclassifiable, full insert sequence
          Length = 1246

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 gtgcattttccagagtgaag 442
           ||||||||||||||||||||
Sbjct: 235 gtgcattttccagagtgaag 254
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>gb|AC000078.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 33e In DGCR Region,
             complete sequence
          Length = 44426

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   tgcctccacctccatcagct 260
             ||||||||||||||||||||
Sbjct: 38740 tgcctccacctccatcagct 38721
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 244      ctccacctccatcagctgca 263
                ||||||||||||||||||||
Sbjct: 10479136 ctccacctccatcagctgca 10479155
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>gb|AC068552.6| Homo sapiens BAC clone RP11-743I4 from 2, complete sequence
          Length = 163846

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   accatttttctgaagtgcat 428
             ||||||||||||||||||||
Sbjct: 19559 accatttttctgaagtgcat 19540
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>gb|AF282677.1|AF282677 Agrobacterium radiobacter strain S2 putative periplasmatic membrane
           protein DctP, putative transmembrane protein DctM, and
           putative transcriptional regulator genes, complete cds
          Length = 3652

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 98  tgccagcaagatcctcgagc 117
           ||||||||||||||||||||
Sbjct: 487 tgccagcaagatcctcgagc 468
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>dbj|AK174009.1| Ciona intestinalis cDNA, clone:ciad013p11, full insert sequence
          Length = 1546

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 ctccatcagctgcagaacct 269
           ||||||||||||||||||||
Sbjct: 835 ctccatcagctgcagaacct 854
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>gb|AC153863.6| Mus musculus 10 BAC RP23-149M7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203121

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    gtgcattttccagagtgaag 442
              ||||||||||||||||||||
Sbjct: 171459 gtgcattttccagagtgaag 171440
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>gb|BT021312.1| Drosophila melanogaster RE14947 full insert cDNA
          Length = 4933

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 337 agcttcatccgccgccgagg 356
           ||||||||||||||||||||
Sbjct: 759 agcttcatccgccgccgagg 740
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>gb|AC165951.3| Mus musculus BAC clone RP24-137B13 from chromosome 17, complete
             sequence
          Length = 209191

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   ttccagagtgaaggagacct 449
             ||||||||||||||||||||
Sbjct: 33773 ttccagagtgaaggagacct 33792
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>emb|AL669855.20| Mouse DNA sequence from clone RP23-82I5 on chromosome 11, complete
              sequence
          Length = 207991

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    gtgcattttccagagtgaag 442
              ||||||||||||||||||||
Sbjct: 125142 gtgcattttccagagtgaag 125161
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>dbj|AB051439.1| Homo sapiens mRNA for KIAA1652 protein, partial cds
          Length = 6381

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  tgcctccacctccatcagct 260
            ||||||||||||||||||||
Sbjct: 2055 tgcctccacctccatcagct 2074


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,949,880
Number of Sequences: 3902068
Number of extensions: 3949880
Number of successful extensions: 68888
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68637
Number of HSP's gapped (non-prelim): 250
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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