Clone Information

BLAST Search Result

Clone Name	rbaal9i18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ARFP_ARATH (Q93YR9) Auxin response factor 16	103	1e-22
2	ARFJ_ARATH (Q9SKN5) Auxin response factor 10	92	1e-19
3	ARFA_ARATH (Q8L7G0) Auxin response factor 1	44	3e-04
4	ARFR_ARATH (Q9C5W9) Auxin response factor 18	43	5e-04
5	ARFK_ARATH (Q9ZPY6) Auxin response factor 11	42	0.001
6	IAA34_ARATH (Q9C5X0) Auxin-responsive protein IAA34 (Indoleaceti...	41	0.002
7	ARFE_ARATH (P93024) Auxin response factor 5 (Transcription facto...	41	0.002
8	IAA32_ARATH (Q8RYC6) Auxin-responsive protein IAA32 (Indoleaceti...	41	0.003
9	IAA20_ORYSA (Q5VRR0) Auxin-responsive protein IAA20 (Indoleaceti...	40	0.006
10	IAA9_ORYSA (Q6K846) Auxin-responsive protein IAA9 (Indoleacetic ...	38	0.023
11	IAA31_ARATH (Q8H174) Auxin-responsive protein IAA31 (Indoleaceti...	38	0.023
12	ARFD_ARATH (Q9ZTX9) Auxin response factor 4	37	0.030
13	ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive p...	37	0.030
14	IAA20_ARATH (O24410) Auxin-responsive protein IAA20 (Indoleaceti...	37	0.051
15	IAA26_ORYSA (Q652A1) Auxin-responsive protein IAA26 (Indoleaceti...	36	0.067
16	ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protei...	36	0.088
17	IAA12_ORYSA (Q75GK1) Auxin-responsive protein IAA12 (Indoleaceti...	35	0.15
18	IAA14_ORYSA (Q7Y1H8) Auxin-responsive protein IAA14 (Indoleaceti...	35	0.15
19	IAA28_ARATH (Q9XFM0) Auxin-responsive protein IAA28 (Indoleaceti...	34	0.33
20	ARFF_ARATH (Q9ZTX8) Auxin response factor 6	33	0.57
21	IAA4_PEA (P49679) Auxin-induced protein IAA4	33	0.57
22	IAA31_ORYSA (P0C133) Auxin-responsive protein IAA31 (Indoleaceti...	33	0.74
23	IAA30_ARATH (Q9M1R4) Putative auxin-responsive protein IAA30 (Pu...	33	0.74
24	ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hyp...	32	0.97
25	IAA8_ORYSA (Q6Z5M0) Auxin-responsive protein IAA8 (Indoleacetic ...	32	1.3
26	IAA4_ARATH (P33077) Auxin-responsive protein IAA4 (Indoleacetic ...	32	1.3
27	IAA2_ORYSA (Q9LG86) Auxin-responsive protein IAA2 (Indoleacetic ...	32	1.3
28	DYIN_DICDI (P54703) Dynein intermediate chain, cytosolic (DH IC)...	32	1.7
29	ARFH_ARATH (Q9FGV1) Auxin response factor 8	32	1.7
30	IAA12_ARATH (Q38830) Auxin-responsive protein IAA12 (Indoleaceti...	31	2.2
31	AX22B_PHAAU (P32294) Auxin-induced protein 22B (Indole-3-acetic ...	31	2.2
32	GLXD_RHIME (O87392) Glutamate synthase large subunit-like protein	31	2.2
33	IAA16_ORYSA (P0C127) Auxin-responsive protein IAA16 (Indoleaceti...	31	2.8
34	STK31_HUMAN (Q9BXU1) Serine/threonine-protein kinase 31 (EC 2.7....	31	2.8
35	IAA15_ORYSA (Q6AT10) Auxin-responsive protein IAA15 (Indoleaceti...	30	3.7
36	AX22C_PHAAU (O24541) Auxin-induced protein 22C (Indole-3-acetic ...	30	3.7
37	CEP2_MOUSE (Q60952) Centrosomal protein 2 (Intranuclear matrix p...	30	4.8
38	IAA25_ORYSA (P0C128) Auxin-responsive protein IAA25 (Indoleaceti...	30	4.8
39	IAA3_ORYSA (Q5NB25) Auxin-responsive protein IAA3 (Indoleacetic ...	30	4.8
40	AUX22_SOYBN (P13088) Auxin-induced protein AUX22	30	4.8
41	IAA13_ARATH (Q38831) Auxin-responsive protein IAA13 (Indoleaceti...	30	4.8
42	IAA13_ORYSA (Q7Y1Y5) Auxin-responsive protein IAA13 (Indoleaceti...	30	6.3
43	IAA2_ARATH (P49678) Auxin-responsive protein IAA2 (Indoleacetic ...	30	6.3
44	IAA11_ARATH (Q38829) Auxin-responsive protein IAA11 (Indoleaceti...	30	6.3
45	IAA1_ORYSA (Q5VRD1) Auxin-responsive protein IAA1 (Indoleacetic ...	30	6.3
46	IAA17_ARATH (P93830) Auxin-responsive protein IAA17 (Indoleaceti...	30	6.3
47	XPO7_MOUSE (Q9EPK7) Exportin-7 (Exp7) (Ran-binding protein 16)	29	8.2
48	POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)	29	8.2
49	AX22D_PHAAU (O24542) Auxin-induced protein 22D (Indole-3-acetic ...	29	8.2

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score =  103 bits (256), Expect(2) = 1e-22
 Identities = 48/73 (65%), Positives = 63/73 (86%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKAELMSHVFYRDAAGALKHTGDEPFSDFTKTARR 353
           GRTLDL+ +GSYEEL R+LSDMFG++K+E++S V YRDA+GA+K+ G+EPFS+F KTARR
Sbjct: 597 GRTLDLSVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKYAGNEPFSEFLKTARR 656

Query: 352 LTILTDTSGDSSV 314
           LTILT+   +S V
Sbjct: 657 LTILTEQGSESVV 669



 Score = 22.7 bits (47), Expect(2) = 1e-22
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 569 GTAKIFMQSEDVG 531
           G  K+FM+S+DVG
Sbjct: 585 GHCKVFMESDDVG 597

to top

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 91.7 bits (226), Expect(2) = 1e-19
 Identities = 42/72 (58%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGME-KAELMSHVFYRDAAGALKHTGDEPFSDFTKTAR 356
           GRTLDL+ +GSY+ELYR+L++MF +E +++L++HV YRDA G +K  GDEPFSDF K  +
Sbjct: 593 GRTLDLSVIGSYQELYRKLAEMFHIEERSDLLTHVVYRDANGVIKRIGDEPFSDFMKATK 652

Query: 355 RLTILTDTSGDS 320
           RLTI  D  GD+
Sbjct: 653 RLTIKMDIGGDN 664



 Score = 23.9 bits (50), Expect(2) = 1e-19
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 569 GTAKIFMQSEDVG 531
           G  K+FM+SEDVG
Sbjct: 581 GHCKVFMESEDVG 593

to top

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKAELMS-----HVFYRDAAGALKHTGDEPFSDFT 368
           GR +DLT    YE+L+++L +MF + K EL+       V Y D    +   GD+P+++F 
Sbjct: 555 GRAIDLTRSECYEDLFKKLEEMFDI-KGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFC 613

Query: 367 KTARRLTILT 338
              R++ I T
Sbjct: 614 GMVRKIFIYT 623

to top

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKAELMSH----VFYRDAAGALKHTGDEPFSDFTK 365
           GR +DLT + SY+EL   L +MF ++  +L++     V + D  G +   GD+P+++F K
Sbjct: 502 GRAVDLTLLKSYDELIDELEEMFEIQ-GQLLARDKWIVVFTDDEGDMMLAGDDPWNEFCK 560

Query: 364 TARRLTI 344
            A+++ I
Sbjct: 561 MAKKIFI 567

to top

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKAELMSH----VFYRDAAGALKHTGDEPFSDFTK 365
           GR +DLT + SY+EL + L  MF +E  EL       + + D  G     GD+P+++F K
Sbjct: 503 GRAVDLTLLRSYDELIKELEKMFEIE-GELSPKDKWAIVFTDDEGDRMLVGDDPWNEFCK 561

Query: 364 TARRLTI 344
            A++L I
Sbjct: 562 MAKKLFI 568

to top

>IAA34_ARATH (Q9C5X0) Auxin-responsive protein IAA34 (Indoleacetic acid-induced|
           protein 34)
          Length = 185

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKA--------ELMSHVFYRDAAGALKHTGDEPFS 377
           GR + +   GSY  L  +L DMFGM+          E    + YRD  G  ++ GD P++
Sbjct: 105 GRKVCVLDHGSYSTLAHQLEDMFGMQSVSGLRLFQMESEFCLVYRDEEGLWRNAGDVPWN 164

Query: 376 DFTKTARRLTI 344
           +F ++  RL I
Sbjct: 165 EFIESVERLRI 175

to top

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
            (Auxin-responsive protein IAA24)
          Length = 902

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
 Frame = -2

Query: 565  LQRYSCNQKTS--GRTLDLTAVGSYEELYRRLSDMFGMEKAELMSH-------VFYRDAA 413
            ++ Y+  QKT   GR++D+T+   YEEL   +  MFG+E   L++H       + Y D  
Sbjct: 792  VRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLE--GLLTHPQSSGWKLVYVDYE 849

Query: 412  GALKHTGDEPFSDFTKTARRLTILTDT 332
              +   GD+P+ +F    R + IL+ T
Sbjct: 850  SDVLLVGDDPWEEFVGCVRCIRILSPT 876

to top

>IAA32_ARATH (Q8RYC6) Auxin-responsive protein IAA32 (Indoleacetic acid-induced|
           protein 32)
          Length = 191

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGME--------KAELMSHVFYRDAAGALKHTGDEPFS 377
           GR + L   G+Y  L  +L+DMFGM+        + E    + YRD  G  ++ GD P+ 
Sbjct: 111 GRKVCLVDQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWK 170

Query: 376 DFTKTARRLTI 344
           +F ++  R+ I
Sbjct: 171 EFVESVDRMRI 181

to top

>IAA20_ORYSA (Q5VRR0) Auxin-responsive protein IAA20 (Indoleacetic acid-induced|
           protein 20)
          Length = 183

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKAE-----LMSH---VFYRDAAGALKHTGDEPFS 377
           GR LDL+ +GSY EL   L  MF     E        H   V Y D  G     GD P+ 
Sbjct: 111 GRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHPYAVTYEDGEGDWMQVGDVPWE 170

Query: 376 DFTKTARRLTIL 341
            F K+ +RL IL
Sbjct: 171 AFAKSVKRLKIL 182

to top

>IAA9_ORYSA (Q6K846) Auxin-responsive protein IAA9 (Indoleacetic acid-induced|
           protein 9)
          Length = 182

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMF------GMEKAELMSH-------VFYRDAAGALKHTG 392
           GR +DL    SY+EL   L+ MF      G +K     H       V Y D  G     G
Sbjct: 105 GRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVG 164

Query: 391 DEPFSDFTKTARRLTIL 341
           D P+ DF ++ +RL IL
Sbjct: 165 DVPWDDFARSVKRLKIL 181

to top

>IAA31_ARATH (Q8H174) Auxin-responsive protein IAA31 (Indoleacetic acid-induced|
           protein 31)
          Length = 158

 Score = 37.7 bits (86), Expect = 0.023
 Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGME----KAELMSHVF-YRDAAGALKHTGDEPFSDFT 368
           GR LDL     YE L   LS MF         +   HV  Y D  G     GD P+  F 
Sbjct: 85  GRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHHVLTYEDKDGDWMMVGDIPWDMFL 144

Query: 367 KTARRLTI 344
           +T RRL I
Sbjct: 145 ETVRRLKI 152

to top

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 37.4 bits (85), Expect = 0.030
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGME----KAELMSHVFYRDAAGALKHTGDEPFSDFTK 365
           GR +DL+ +  Y++L   L  +F ME      E    + Y D+   +   GD+P+ DF  
Sbjct: 678 GRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCN 737

Query: 364 TARRLTILT 338
              ++ + T
Sbjct: 738 VVWKIHLYT 746

to top

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 37.4 bits (85), Expect = 0.030
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = -2

Query: 532  GRTLDLTAVGSYEELYRRLSDMFGME---KAELMS--HVFYRDAAGALKHTGDEPFSDFT 368
            GR++D+T    Y+EL   L+ MFG+E   +  L S   + Y D    +   GD+P+ +F 
Sbjct: 970  GRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFV 1029

Query: 367  KTARRLTILT 338
               + + IL+
Sbjct: 1030 NCVQNIKILS 1039

to top

>IAA20_ARATH (O24410) Auxin-responsive protein IAA20 (Indoleacetic acid-induced|
           protein 20)
          Length = 175

 Score = 36.6 bits (83), Expect = 0.051
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGM--------EKAELMSHVF-YRDAAGALKHTGDEPF 380
           GR +DL ++  Y +L R L  MF          +     SHV  Y D  G     GD P+
Sbjct: 97  GRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKEGDWMMVGDVPW 156

Query: 379 SDFTKTARRLTI 344
             F  T RRL I
Sbjct: 157 EMFLSTVRRLKI 168

to top

>IAA26_ORYSA (Q652A1) Auxin-responsive protein IAA26 (Indoleacetic acid-induced|
           protein 26)
          Length = 140

 Score = 36.2 bits (82), Expect = 0.067
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFGMEKAELMS-------HVFYRDAAGALKHTGDEPFSDF 371
           R +D+ A G Y EL   L+DMF      LM         V Y D  G     GD P+  F
Sbjct: 59  RKVDVAAYGDYLELVEALNDMFYCSTIGLMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMF 118

Query: 370 TKTARRLTIL 341
             + +R+ ++
Sbjct: 119 VSSCKRMRVM 128

to top

>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score = 35.8 bits (81), Expect = 0.088
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKAELMSH-----VFYRDAAGALKHTGDEPFSDFT 368
           GR++DL+   +YEEL   L  +F     ELM+      + Y D    +   GD+P+ +F 
Sbjct: 746 GRSVDLSKFQNYEELVAELDRLFEF-NGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFC 804

Query: 367 KTARRLTILT 338
              R++ I T
Sbjct: 805 CMVRKIFIYT 814

to top

>IAA12_ORYSA (Q75GK1) Auxin-responsive protein IAA12 (Indoleacetic acid-induced|
           protein 12)
          Length = 226

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMF--------GMEKAELMSHVFYRDAAGALKHTGDEPFSD 374
           R +DL     Y EL   L  MF        G   +E    + Y+D  G L   GD PF  
Sbjct: 142 RKIDLRMYKGYRELREALEAMFVCFSGAADGANPSEFA--ITYQDKDGDLMLVGDVPFDM 199

Query: 373 FTKTARRLTIL 341
           FT T ++L I+
Sbjct: 200 FTSTCKKLRIM 210

to top

>IAA14_ORYSA (Q7Y1H8) Auxin-responsive protein IAA14 (Indoleacetic acid-induced|
           protein 14)
          Length = 195

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFGMEKAELMSH-----VFYRDAAGALKHTGDEPFSDFTK 365
           R +DL   G Y EL   L  +FG   A+  +      V Y D  G L   GD P+  F  
Sbjct: 122 RKVDLRMYGGYRELRDALDALFGCFSADASASAAHFAVAYEDKDGDLMLAGDVPWDMFIS 181

Query: 364 TARRLTIL 341
           + ++L I+
Sbjct: 182 SCKKLRIM 189

to top

>IAA28_ARATH (Q9XFM0) Auxin-responsive protein IAA28 (Indoleacetic acid-induced|
           protein 28)
          Length = 175

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKAELMSHVF---YRDAAGALKHTGDEPFSDFTKT 362
           GR ++L+A  +Y++L   +  +F  + +  ++  +   Y D  G     GD P+  F  T
Sbjct: 93  GRKVNLSAYNNYQQLSHAVDQLFSKKDSWDLNRQYTLVYEDTEGDKVLVGDVPWEMFVST 152

Query: 361 ARRLTIL 341
            +RL +L
Sbjct: 153 VKRLHVL 159

to top

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = -2

Query: 532  GRTLDLTAVGSYEELYRRLSDMFGMEKAELMSHV------FYRDAAGALKHTGDEPFSDF 371
            GR+LD++   SY EL   L+ MFG+E  +L   V       + D    +   GD+P+ +F
Sbjct: 806  GRSLDISKFSSYHELRSELARMFGLE-GQLEDPVRSGWQLVFVDRENDVLLLGDDPWPEF 864

Query: 370  TKTARRLTILT 338
              +   + IL+
Sbjct: 865  VSSVWCIKILS 875

to top

>IAA4_PEA (P49679) Auxin-induced protein IAA4|
          Length = 189

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFGMEKAELMSHVFYR---------DAAGALKHTGDEPFS 377
           R +DL   G Y EL + L  MF +   E      Y+         D  G     GD P+ 
Sbjct: 106 RKIDLRVYGGYSELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWD 165

Query: 376 DFTKTARRLTILTDT 332
            F  + +RL I+  T
Sbjct: 166 MFVTSCKRLRIMKGT 180

to top

>IAA31_ORYSA (P0C133) Auxin-responsive protein IAA31 (Indoleacetic acid-induced|
           protein 31)
          Length = 197

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMF----GMEKAELMSH-----VFYRDAAGALKHTGDEPFS 377
           R +DL     Y EL   L  MF    G   A+   +     V Y D  G L   GD PF 
Sbjct: 113 RKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDVPFE 172

Query: 376 DFTKTARRLTIL 341
            F  T +RL I+
Sbjct: 173 MFISTCKRLRIM 184

to top

>IAA30_ARATH (Q9M1R4) Putative auxin-responsive protein IAA30 (Putative|
           indoleacetic acid-induced protein 30)
          Length = 172

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGM--------EKAELMSHVF-YRDAAGALKHTGDEPF 380
           GR +DL ++  Y +L   L  MF          +     SHV  Y D  G     GD P+
Sbjct: 95  GRKIDLLSLNGYHDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKEGDWMMVGDVPW 154

Query: 379 SDFTKTARRLTI 344
             F  + RRL I
Sbjct: 155 EMFLSSVRRLKI 166

to top

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
            (Protein BIPOSTO) (Auxin-responsive protein
            IAA21/IAA23/IAA25)
          Length = 1164

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = -2

Query: 532  GRTLDLTAVGSYEELYRRLSDMFGMEKAELMS------HVFYRDAAGALKHTGDEPFSDF 371
            GR++D+     Y+EL   L+ MFG+E  +L         + Y D    +   GD+P+ +F
Sbjct: 1049 GRSIDVNRYRGYDELRHDLARMFGIE-GQLEDPQTSDWKLVYVDHENDILLVGDDPWEEF 1107

Query: 370  TKTARRLTILT 338
                + + IL+
Sbjct: 1108 VNCVQSIKILS 1118

to top

>IAA8_ORYSA (Q6Z5M0) Auxin-responsive protein IAA8 (Indoleacetic acid-induced|
           protein 8)
          Length = 205

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMF----------------GMEKAELMSHVFYRDAAGALK 401
           GR LDL  +  Y+ L  RL+ MF                GM+  ++   + Y D  G   
Sbjct: 116 GRKLDLLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVLTYEDQEGDWM 175

Query: 400 HTGDEPFSDFTKTARRLTI 344
             GD P+  F  + +RL I
Sbjct: 176 MAGDVPWELFLTSVKRLRI 194

to top

>IAA4_ARATH (P33077) Auxin-responsive protein IAA4 (Indoleacetic acid-induced|
           protein 4) (Auxin-induced protein AUX2-11)
          Length = 186

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFGMEKAELMSHVFYR---------DAAGALKHTGDEPFS 377
           R +DLT    Y EL + L +MF     E      Y+         D  G     GD P+ 
Sbjct: 102 RKIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWE 161

Query: 376 DFTKTARRLTIL 341
            F  + +RL I+
Sbjct: 162 MFVSSCKRLRIM 173

to top

>IAA2_ORYSA (Q9LG86) Auxin-responsive protein IAA2 (Indoleacetic acid-induced|
           protein 2)
          Length = 238

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMF-GMEKAELMSH-------------------VFYRDAA 413
           GR +DL A G Y +L   +  +F G+  A+  +                    + Y D  
Sbjct: 131 GRKVDLAAYGGYAQLSAAVDKLFRGLLAAQSAAADGEADAAAAGEMVGGGEYTLVYEDDE 190

Query: 412 GALKHTGDEPFSDFTKTARRLTIL--TDTSGDSSVAS*GVRKEASS 281
           G     GD P+  F  TA+RL +L  +D    S + + G RK A++
Sbjct: 191 GDRMLVGDVPWQMFIATAKRLRVLKSSDLPPPSLMRAAGSRKRAAA 236

to top

>DYIN_DICDI (P54703) Dynein intermediate chain, cytosolic (DH IC) (Cytoplasmic|
           dynein intermediate chain)
          Length = 652

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 GTSLIIGEKLKLPAPVVLLDLHPGRGGSPF 190
           G  +++ E+ K   P+  +DLHP +GG+ F
Sbjct: 478 GNRIVMNERYKELGPITSVDLHPSKGGADF 507

to top

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGME---KAELMS--HVFYRDAAGALKHTGDEPFSDFT 368
           GR+LD++   SY EL   L  MF +E   +  L S   + + D    +   GD+P+  F 
Sbjct: 717 GRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWESFV 776

Query: 367 KTARRLTILT 338
                + IL+
Sbjct: 777 NNVWYIKILS 786

to top

>IAA12_ARATH (Q38830) Auxin-responsive protein IAA12 (Indoleacetic acid-induced|
           protein 12) (BODENLOS protein)
          Length = 239

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDM-FGMEKAELMSHV--------------FYRDAAGALKH 398
           GR +D+ A  SYE L + L +M FGM        V               Y D  G    
Sbjct: 137 GRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTYEDKEGDWML 196

Query: 397 TGDEPFSDFTKTARRLTILTDTSGDSSVA 311
            GD P+  F  + +RL I+  TS  S +A
Sbjct: 197 VGDVPWRMFINSVKRLRIM-GTSEASGLA 224

to top

>AX22B_PHAAU (P32294) Auxin-induced protein 22B (Indole-3-acetic acid-induced|
           protein ARG4)
          Length = 196

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFGMEKAELMSHVFYR---------DAAGALKHTGDEPFS 377
           R +DL   G Y EL + L  MF +   E      Y+         D  G     GD P+ 
Sbjct: 113 RKVDLKVYGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWD 172

Query: 376 DFTKTARRLTIL 341
            F  + +RL I+
Sbjct: 173 MFVTSCKRLRIM 184

to top

>GLXD_RHIME (O87392) Glutamate synthase large subunit-like protein|
          Length = 442

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -3

Query: 270 VRATAGRGAAPHGGG-------SQRA*IEWRQTPNGEPPRPGCKSRSTTGAGSFSFSPI- 115
           +    G+GA P GGG       S R     R  P G   R  C+    TG        + 
Sbjct: 159 IEVVVGQGAKPGGGGMLLGQKISDRV-ANMRNLPKGIDQRSACRHPDWTGPDDLEIKILE 217

Query: 114 IREVPEWDG*LFV 76
           +RE+ +W+  ++V
Sbjct: 218 LREITDWEKPIYV 230

to top

>IAA16_ORYSA (P0C127) Auxin-responsive protein IAA16 (Indoleacetic acid-induced|
           protein 16)
          Length = 228

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 427 YRDAAGALKHTGDEPFSDFTKTARRLTILTDTSGDSSVAS*GVRKEASS 281
           Y D  G     GD P++ F   ARRL +L  +  ++S    G RK A++
Sbjct: 179 YEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSDLNASTIRAGSRKRAAA 227

to top

>STK31_HUMAN (Q9BXU1) Serine/threonine-protein kinase 31 (EC 2.7.11.1)|
           (Serine/threonine-protein kinase NYD-SPK)
          Length = 1019

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 19  IIIMGTSQHNERKKSVQGSHKQSSVPFWDLSNNRRK 126
           I+ M    H ++ + V GSH + +V FW  S NR K
Sbjct: 21  IVQMDEDTHYDKVEDVVGSHIEDAVTFWAQSINRNK 56

to top

>IAA15_ORYSA (Q6AT10) Auxin-responsive protein IAA15 (Indoleacetic acid-induced|
           protein 15)
          Length = 212

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMF---------GMEKAELMSHVF-------YRDAAGALKH 398
           R +DL A   Y++L   L D F         G E+ +L+  V        Y D  G    
Sbjct: 121 RKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSGNEYVPTYEDKDGDWML 180

Query: 397 TGDEPFSDFTKTARRLTIL 341
            GD P+  F +T +RL ++
Sbjct: 181 VGDVPWKMFVETCQRLRLM 199

to top

>AX22C_PHAAU (O24541) Auxin-induced protein 22C (Indole-3-acetic acid-induced|
           protein ARG12)
          Length = 188

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFG-------MEKAELMSHV-FYRDAAGALKHTGDEPFSD 374
           R +DL     Y +L   L   FG       ++ AE   HV  Y D  G     GD P+  
Sbjct: 93  RKIDLAMHKGYSDLAFALDKFFGCYGICEALKDAENAEHVPIYEDKDGDWMLVGDVPWEM 152

Query: 373 FTKTARRLTIL 341
           F ++ +RL I+
Sbjct: 153 FRESCKRLRIM 163

to top

>CEP2_MOUSE (Q60952) Centrosomal protein 2 (Intranuclear matrix protein)|
           (Fragment)
          Length = 609

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -1

Query: 380 QRLHEDGA*ADDTNGHERRQQRSELGGEEGSKLFRHLYVLQLGGAQR-RTVAVLRERR*S 204
           Q L + GA     NG + +Q   +   EE  +L   L  LQL  AQR   + +LRE    
Sbjct: 240 QLLEKAGARRSQENGIQEKQSLEQERQEETRRLLESLKELQLTVAQREEEILMLRE---- 295

Query: 203 GGKPRMASHRGLDASQEA-PPVQAASVFLRL 114
                  SHR L A + A  P+ A     RL
Sbjct: 296 ---ASSPSHRALPAEKPALQPLPAQQELERL 323

to top

>IAA25_ORYSA (P0C128) Auxin-responsive protein IAA25 (Indoleacetic acid-induced|
           protein 25)
          Length = 246

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 17/83 (20%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMF----------------GMEKAELMSHVF-YRDAAGAL 404
           GR +DL A  SY+ L + L  MF                 ME+     +V  Y D  G  
Sbjct: 156 GRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQMEEGSKKRYVLVYEDNEGDR 215

Query: 403 KHTGDEPFSDFTKTARRLTILTD 335
              GD P+  F  + +RL I  D
Sbjct: 216 MLVGDVPWELFIASVKRLYIAQD 238

to top

>IAA3_ORYSA (Q5NB25) Auxin-responsive protein IAA3 (Indoleacetic acid-induced|
           protein 3)
          Length = 263

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMF-----GMEKAELMSH----VFYRDAAGALKHTGDEPFS 377
           R +DL    +Y+++   L  MF     G E AE        + Y D  G     GD P+ 
Sbjct: 172 RKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAENQKDGEYVLTYEDKDGDWMLVGDVPWE 231

Query: 376 DFTKTARRLTIL 341
            FT + RRL I+
Sbjct: 232 MFTDSCRRLRIM 243

to top

>AUX22_SOYBN (P13088) Auxin-induced protein AUX22|
          Length = 195

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFG-------MEKAELMSHV-FYRDAAGALKHTGDEPFSD 374
           R +DL     Y +L   L  +FG       ++ A+   HV  Y D  G     GD P+  
Sbjct: 100 RKIDLGLHKGYSDLALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEM 159

Query: 373 FTKTARRLTIL 341
           F ++ +RL I+
Sbjct: 160 FMESCKRLRIM 170

to top

>IAA13_ARATH (Q38831) Auxin-responsive protein IAA13 (Indoleacetic acid-induced|
           protein 13)
          Length = 247

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 18/92 (19%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMFGMEKAELMS------------------HVFYRDAAGA 407
           GR +DL A  SYE L + L DMF       +                    + Y D  G 
Sbjct: 142 GRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSEFVLTYEDKEGD 201

Query: 406 LKHTGDEPFSDFTKTARRLTILTDTSGDSSVA 311
               GD P+  F  + +RL ++  +  +   A
Sbjct: 202 WMLVGDVPWRMFINSVKRLRVMKTSEANGLAA 233

to top

>IAA13_ORYSA (Q7Y1Y5) Auxin-responsive protein IAA13 (Indoleacetic acid-induced|
           protein 13)
          Length = 236

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFGMEKA--ELMSHV-------FYRDAAGALKHTGDEPFS 377
           R +DL    SY++L   L  MFG   A    M+ V        Y D  G     GD P+ 
Sbjct: 145 RKVDLKMYNSYKDLSLALQKMFGTFTATGNNMNEVNGSDAVTTYEDKDGDWMLVGDVPWQ 204

Query: 376 DFTKTARRLTIL 341
            F ++ +RL I+
Sbjct: 205 MFVESCKRLRIM 216

to top

>IAA2_ARATH (P49678) Auxin-responsive protein IAA2 (Indoleacetic acid-induced|
           protein 2)
          Length = 174

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFGMEKAELMSHVFYR---------DAAGALKHTGDEPFS 377
           R +DL    +Y EL + L +MF +   E      Y+         D  G     GD P+ 
Sbjct: 91  RKIDLKTYKNYPELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWD 150

Query: 376 DFTKTARRLTIL 341
            F+ + +RL I+
Sbjct: 151 MFSSSCKRLRIM 162

to top

>IAA11_ARATH (Q38829) Auxin-responsive protein IAA11 (Indoleacetic acid-induced|
           protein 11)
          Length = 246

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 21/85 (24%)
 Frame = -2

Query: 532 GRTLDLTAVGSYEELYRRLSDMF-----GMEKAELMSH----------------VFYRDA 416
           GR +DL A   YE L   L +MF     G    E   H                + Y D 
Sbjct: 149 GRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYEDK 208

Query: 415 AGALKHTGDEPFSDFTKTARRLTIL 341
            G     GD P+  F  + RRL I+
Sbjct: 209 EGDWMLVGDVPWGMFIGSVRRLRIM 233

to top

>IAA1_ORYSA (Q5VRD1) Auxin-responsive protein IAA1 (Indoleacetic acid-induced|
           protein 1)
          Length = 199

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMF---------GMEKAELMSHV-------FYRDAAGALKH 398
           R +DL A   Y++L R L D F           ++ +L+  V        Y D  G    
Sbjct: 107 RKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWML 166

Query: 397 TGDEPFSDFTKTARRLTIL 341
            GD P+  F +T +RL ++
Sbjct: 167 VGDVPWKMFVETCQRLRLM 185

to top

>IAA17_ARATH (P93830) Auxin-responsive protein IAA17 (Indoleacetic acid-induced|
           protein 17) (Auxin response 3)
          Length = 229

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 23/86 (26%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFG----------------MEKAELMSHV-------FYRD 419
           R +DL    SY+EL   LS+MF                 M + +LM  V        Y D
Sbjct: 124 RKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYED 183

Query: 418 AAGALKHTGDEPFSDFTKTARRLTIL 341
             G     GD P+  F  T +RL ++
Sbjct: 184 KDGDWMLVGDVPWPMFVDTCKRLRLM 209

to top

>XPO7_MOUSE (Q9EPK7) Exportin-7 (Exp7) (Ran-binding protein 16)|
          Length = 1086

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -2

Query: 493 ELYRRLSDMFGMEKAELMSHVFYRDAAGALKHTGD-EPFSDFTKTARRLTILTDTS-GDS 320
           +LYRRLS++ G+    ++  VF       LK+ G  EP      T++ L +L D S G S
Sbjct: 570 KLYRRLSEVLGLNDETMVLSVFIGKVITNLKYWGRCEPI-----TSKTLQLLNDLSIGYS 624

Query: 319 SV 314
           SV
Sbjct: 625 SV 626

to top

>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1839

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = -2

Query: 280  FATCTCYSWEGRSAARWRFSESVDRVAANPEWRATAAWMQVKKHHRCRQLQFFSDY 113
            F+ C C +   + +++ + +   +   ++P+WR TA  +  K  H+      FS +
Sbjct: 1454 FSECICINDYAQLSSKTQATIVANHQRSDPDWRLTAVRIFAKAQHKVNDASIFSGW 1509

to top

>AX22D_PHAAU (O24542) Auxin-induced protein 22D (Indole-3-acetic acid-induced|
           protein ARG13)
          Length = 193

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
 Frame = -2

Query: 529 RTLDLTAVGSYEELYRRLSDMFGMEKAELMSHV---------FYRDAAGALKHTGDEPFS 377
           R +DL    SY EL + L +MF     E               Y D  G     GD P++
Sbjct: 111 RKIDLKVYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWN 170

Query: 376 DFTKTARRLTIL 341
            F  + +RL I+
Sbjct: 171 MFVSSCKRLRIM 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,019,824
Number of Sequences: 219361
Number of extensions: 1767451
Number of successful extensions: 5505
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 5254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5482
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result