ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags13d14 |
|---|---|
| Clone Library Name | barley_pub |
>ATPQ_ARATH (Q9FT52) ATP synthase D chain, mitochondrial (EC 3.6.3.14)| Length = 167 Score = 230 bits (587), Expect = 2e-60 Identities = 110/149 (73%), Positives = 123/149 (82%) Frame = +2 Query: 83 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM 262 IDWDGMAK+LV++EAR+EF+NLRR F++VN QLQTKFSQEP+PIDW+YYRKGIG+ +VD Sbjct: 18 IDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDK 77 Query: 263 YKEAYDSIEIPKYVDTVTPRYKPKFDALLVELKEAEKTSLKESXXXXXXXXXXXXXXXXX 442 YKEAYDSIEIPKYVD VTP YKPKFDALLVELKEAE+ SLKES Sbjct: 78 YKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKL 137 Query: 443 STMTADEYFAKHPELKKKFDDEMRNDYWG 529 STMTADEYF KHPELKKKFDDE+RND WG Sbjct: 138 STMTADEYFEKHPELKKKFDDEIRNDNWG 166
>ATP5H_RAT (P31399) ATP synthase D chain, mitochondrial (EC 3.6.3.14)| Length = 160 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Frame = +2 Query: 83 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSK-VVD 259 IDW +++ + K N +++ + H S++P IDW YYR + +VD Sbjct: 10 IDWVSFVEIMPQNQ--KAIGNALKSWNETFHTRLASLSEKPPAIDWAYYRANVDKPGLVD 67 Query: 260 MYKEAYDSIEIPKYVDTVT 316 +K Y++++IP D T Sbjct: 68 DFKNKYNALKIPVPEDKYT 86
>ATP5H_MOUSE (Q9DCX2) ATP synthase D chain, mitochondrial (EC 3.6.3.14)| Length = 160 Score = 42.7 bits (99), Expect = 6e-04 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +2 Query: 83 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSK-VVD 259 IDW +++ + K N +++ + H S++P IDW YYR + +VD Sbjct: 10 IDWVSFVEVMPQNQ--KAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVD 67 Query: 260 MYKEAYDSIEIPKYVDTVT 316 +++ Y++++IP D T Sbjct: 68 DFEKKYNALKIPVPEDKYT 86
>ATP5H_HUMAN (O75947) ATP synthase D chain, mitochondrial (EC 3.6.3.14)| Length = 160 Score = 34.3 bits (77), Expect = 0.23 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +2 Query: 83 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIG-SKVVD 259 IDW A+++ + K A+ +++ + + P IDW YY+ + + +VD Sbjct: 10 IDWVAFAEIIPQNQ--KAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVD 67 Query: 260 MYKEAYDSIEIPKYVDTVT 316 +++ ++++++P D T Sbjct: 68 DFEKKFNALKVPVPEDKYT 86
>ATP5H_BOVIN (P13620) ATP synthase D chain, mitochondrial (EC 3.6.3.14)| Length = 160 Score = 33.9 bits (76), Expect = 0.29 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Frame = +2 Query: 83 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIG-SKVVD 259 IDW +++ + K AN +++ + ++P IDW YY+ + + +VD Sbjct: 10 IDWVAFGEIIPRNQ--KAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVD 67 Query: 260 MYKEAYDSIEIPKYVDTVT 316 +++ ++++++P D T Sbjct: 68 DFEKKFNALKVPIPEDKYT 86
>ATP7_KLULA (O13350) ATP synthase D chain, mitochondrial (EC 3.6.3.14)| Length = 173 Score = 33.1 bits (74), Expect = 0.50 Identities = 25/157 (15%), Positives = 65/157 (41%), Gaps = 7/157 (4%) Frame = +2 Query: 83 IDWDGMAKML-VSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGI-GSKVV 256 +DW + L ++ + + ++ ++ ++ QL + +P +D+ +YR + ++VV Sbjct: 10 LDWAKVISSLKLTGKTATQLSSFKKRNDEARRQL-LELQSQPTSVDFSHYRSVLKNTEVV 68 Query: 257 DMYKEAYDS-----IEIPKYVDTVTPRYKPKFDALLVELKEAEKTSLKESXXXXXXXXXX 421 D ++ Y S +++ K + T+ F++ +E + + + Sbjct: 69 DKIEQFYKSYKPVSVDVSKQLSTIEA-----FESQAIENAAETEKLVAQELKDLKETLNN 123 Query: 422 XXXXXXXSTMTADEYFAKHPELKKKFDDEMRNDYWGI 532 +T DE PE+ K ++ ++ W + Sbjct: 124 IESARPFDQLTVDELTKARPEIDAKVEEMVKKGRWDV 160
>D7_AEDAE (P18153) D7 protein precursor (Allergen Aed a 2)| Length = 321 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +2 Query: 119 EEARKEFANLRRTFEDVNHQLQTKFSQEPQPI---DWEYYRKGIGSKVVDMYKEAYDSIE 289 EE +++F + + + + L S+EP W YY+ + S V D +KEA+D E Sbjct: 227 EEVKRDFKLVNKDTKALEKVLNDCKSKEPSNAKEKSWHYYKCLVESSVKDDFKEAFDYRE 286 Query: 290 I 292 + Sbjct: 287 V 287
>DPOL_EHV1V (Q6S6P1) DNA polymerase (EC 2.7.7.7)| Length = 1220 Score = 31.6 bits (70), Expect = 1.5 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = -2 Query: 153 RRRLANSFRASSETSIFAMPSQSIAFPALAATSATFFTPLIFGSGSAN 10 RRR + A+SETS AM SQS AF + TP GSG+ + Sbjct: 635 RRRFDSQADAASETSELAMDSQSHAFDSTDEPDGVDGTPDAAGSGATS 682
>DPOL_EHV1B (P28858) DNA polymerase (EC 2.7.7.7)| Length = 1220 Score = 31.6 bits (70), Expect = 1.5 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = -2 Query: 153 RRRLANSFRASSETSIFAMPSQSIAFPALAATSATFFTPLIFGSGSAN 10 RRR + A+SETS AM SQS AF + TP GSG+ + Sbjct: 635 RRRFDSQADAASETSELAMDSQSHAFDSTDEPDGVDGTPDAAGSGATS 682
>CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)| (Ik3-2) Length = 478 Score = 31.2 bits (69), Expect = 1.9 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 124 GPEGVRQPPPHLRGRQPPAPDQVLPGT 204 GP G + PPP R+PPAP P T Sbjct: 65 GPGGEKPPPPPAEAREPPAPPPPEPPT 91
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +1 Query: 358 EGGREDISEGIREDREGDC*NEGDEEKDQHND 453 EGG ED+ E D +GD E DE+ ++ D Sbjct: 202 EGGEEDVEEDEEVDEDGDDDEEVDEDAEEEED 233
>RS24_PYRFU (Q8U442) 30S ribosomal protein S24e| Length = 99 Score = 30.4 bits (67), Expect = 3.3 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = +2 Query: 161 EDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDMYKEAYDSIEIPKYVDTVTPRYKPKFD 340 +DV +L P+ +Y R GS + Y +AYDS E Y++ P Y D Sbjct: 34 KDVKGKLVAMLDLNPETTVIQYIRSYFGSYISKGYAKAYDSKERMLYIE---PEYILIRD 90 Query: 341 ALLVELKEAE 370 L+E KE E Sbjct: 91 G-LIEKKEGE 99
>AATF_RAT (Q9QYW0) Protein AATF (Apoptosis-antagonizing transcription factor)| Length = 523 Score = 30.0 bits (66), Expect = 4.3 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +1 Query: 358 EGGREDISEGIREDREGDC*NEGDEEKDQHNDSRRVL 468 EG E+ISE + ED EG+ +E D E+D++++ V+ Sbjct: 139 EGLEEEISEDVEEDLEGE--DEEDREEDRNSEDDGVV 173
>SMYD5_XENLA (Q6GPQ4) SET and MYND domain-containing protein 5| Length = 421 Score = 29.6 bits (65), Expect = 5.6 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%) Frame = +2 Query: 110 LVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYR-----KGIGSKVVDMYKEA 274 L+ E+ + + LRR F D ++ + P+ + +GIG+ + + A Sbjct: 207 LLGEKFKGQLDQLRRLFVDALYEERMSRWFTPEGFRSLFALVGTNGQGIGTSSLSQWVHA 266 Query: 275 YDSIEIPKYVDTVTPRYKPKFDALLVEL-KEAEKTS 379 D++E+P PR + K DAL+ +L K+ EK + Sbjct: 267 CDALELP-------PRDREKLDALIDQLYKDIEKVT 295
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +1 Query: 124 GPEGVRQPPPHLRGRQPPAPDQVLPG 201 G +G +QPPP + G PPAP Q PG Sbjct: 1300 GQQG-QQPPPSVGGGPPPAPQQHGPG 1324
>WSP1_SCHPO (O36027) Wiskott-Aldrich syndrome homolog protein 1| Length = 574 Score = 29.6 bits (65), Expect = 5.6 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Frame = +1 Query: 118 RGGPEGVRQPPPHLRGR---QPPAPDQVLPGTTA 210 R P RQPPP R PPAP +PG +A Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA 400
>SF3A2_MOUSE (Q62203) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 475 Score = 29.6 bits (65), Expect = 5.6 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 115 LRGGPEGVRQPPPHLRGRQPPAP 183 L GP GV++PPP L PP P Sbjct: 213 LPAGPPGVKRPPPPLMNGLPPRP 235
>SF3A2_HUMAN (Q15428) Splicing factor 3A subunit 2 (Spliceosome-associated| protein 62) (SAP 62) (SF3a66) Length = 464 Score = 29.6 bits (65), Expect = 5.6 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 115 LRGGPEGVRQPPPHLRGRQPPAP 183 L GP GV++PPP L PP P Sbjct: 223 LPAGPPGVKRPPPPLMNGLPPRP 245
>FOXM1_MOUSE (O08696) Forkhead box protein M1 (Forkhead homolog 16)| (Winged-helix transcription factor Trident) Length = 760 Score = 29.6 bits (65), Expect = 5.6 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 145 PPPHLRGRQPPAPDQVLPGTTAN 213 PPPH+ G +P +P+ +P +AN Sbjct: 690 PPPHVEGPKPGSPELQIPSLSAN 712
>IFA1_CAEEL (P90901) Intermediate filament protein ifa-1 (Intermediate filament| protein A1) (IF-A1) (Cel IF A1) Length = 575 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/68 (26%), Positives = 36/68 (52%) Frame = +2 Query: 83 IDWDGMAKMLVSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM 262 ID+ + L+ +E LRR ++ +LQT S++ P + E+++ + S + D+ Sbjct: 229 IDYQNQVQTLL-----EEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDI 283 Query: 263 YKEAYDSI 286 +E YD + Sbjct: 284 -REEYDQV 290
>GPS2_HUMAN (Q13227) G protein pathway suppressor 2 (GPS2 protein)| Length = 327 Score = 29.3 bits (64), Expect = 7.3 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = +1 Query: 97 HGEDARLRGGPEGVRQPPPHLRGRQPP-APDQVLPGTTA 210 HG+ GG G QPPPH QP +P Q L +A Sbjct: 177 HGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSA 215
>MUTS2_CLOAB (Q97GM6) MutS2 protein| Length = 788 Score = 29.3 bits (64), Expect = 7.3 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 9/96 (9%) Frame = +2 Query: 113 VSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDMYKEAYDSI-- 286 + EEARK + FED+ LQT+ + + + + K K + Y+E SI Sbjct: 501 IIEEARKGISKDTLEFEDLIQNLQTRSVKAEENLRKAEFLKEQAEKFKEKYEEKVSSITE 560 Query: 287 -------EIPKYVDTVTPRYKPKFDALLVELKEAEK 373 E + + K + D +L +++E E+ Sbjct: 561 TREKALHEGRREAKKIIEEAKSEADKILKDMREMER 596
>BFR2_ASPFU (Q4WMI1) Protein bfr2| Length = 565 Score = 28.9 bits (63), Expect = 9.5 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 11/47 (23%) Frame = +1 Query: 358 EGGREDISEGIRED-----------REGDC*NEGDEEKDQHNDSRRV 465 EG +D +G ED +EGD + DE++D+ D+R+V Sbjct: 165 EGSEDDSEDGFDEDDMSGEFSSDDDQEGDEDGDDDEDEDEETDNRKV 211
>FHOD1_MOUSE (Q6P9Q4) FH1/FH2 domain-containing protein (Formin homolog| overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1) Length = 1196 Score = 28.9 bits (63), Expect = 9.5 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +1 Query: 115 LRGGPEGVRQPPPHLRGRQPPAPDQVLP 198 L GGP PPP + G PP P LP Sbjct: 582 LSGGPPPPPPPPPPITGSCPPPPPPPLP 609
>MUTS2_CLOPE (Q8XJ80) MutS2 protein| Length = 786 Score = 28.9 bits (63), Expect = 9.5 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%) Frame = +2 Query: 113 VSEEARKEFANLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDMYKEAYDSIEI 292 V EEA+K + FED+ LQ K + + K + YKE ++ IE Sbjct: 501 VIEEAKKVISTESLQFEDLIQSLQEKSIKAENDAREAAILRNDAEKYKNRYKEKFERIES 560 Query: 293 PK---YVDT------VTPRYKPKFDALLVELKEAEKTSL 382 + Y D + K + DA+L +++ E+ + Sbjct: 561 VRDNVYADARREAKQILDSAKEEADAILKNMRDLERMGI 599
>PUAC_STRMI (P13249) Puromycin N-acetyltransferase (EC 2.3.-.-)| Length = 199 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +2 Query: 221 EYYRKGIGSKVVDMYKEAYDSIEIPKYVDTVTPRYKPKFDAL 346 ++ KG+GS VV EA + +P +++T PR P ++ L Sbjct: 133 DHQGKGLGSAVVLPGVEAAERAGVPAFLETSAPRNLPFYERL 174 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,030,860 Number of Sequences: 219361 Number of extensions: 982447 Number of successful extensions: 4444 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4098 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4427 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
