>FUT1_PANTR (Q9TUD6) Galactoside 2-alpha-L-fucosyltransferase 1 (EC 2.4.1.69)|
           (GDP-L-fucose:beta-D-galactoside
           2-alpha-L-fucosyltransferase 1) (Alpha(1,2)FT 1)
           (Fucosyltransferase 1)
          Length = 366

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 12/46 (26%)
 Frame = +3

Query: 351 PTSAQIAYQFRMIMVVSV------------PHGLGICLMLPDLGLI 452
           P+  Q+   F ++ V+SV            PHGLG+ ++ PD GL+
Sbjct: 4   PSHRQLCLAFLLVCVLSVISFFLHIHQDSFPHGLGLSILCPDRGLV 49

>PTNC_SHIFL (P69804) Mannose permease IIC component (PTS system|
           mannose-specific EIIC component) (EIIC-Man) (EII-P-Man)
          Length = 266

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +2

Query: 56  ISSTVGLIGSRYSLGNNIGLGTPLSIQQQLLVLLKRSL---------KRADMLKLTSLLS 208
           I ST+ +I    S+G  I L  PL+   Q+L ++ R++         K AD   LT+ +S
Sbjct: 79  IISTILVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVAFQHAADKAADNGNLTA-IS 137

Query: 209 FDHISLAKFDLKHVQRPLV 265
           + H+S        V  P V
Sbjct: 138 WIHVSSLFLQAMRVAIPAV 156

>PTNC_ECOLI (P69801) Mannose permease IIC component (PTS system|
           mannose-specific EIIC component) (EIIC-Man) (EII-P-Man)
          Length = 266

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +2

Query: 56  ISSTVGLIGSRYSLGNNIGLGTPLSIQQQLLVLLKRSL---------KRADMLKLTSLLS 208
           I ST+ +I    S+G  I L  PL+   Q+L ++ R++         K AD   LT+ +S
Sbjct: 79  IISTILVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVAFQHAADKAADNGNLTA-IS 137

Query: 209 FDHISLAKFDLKHVQRPLV 265
           + H+S        V  P V
Sbjct: 138 WIHVSSLFLQAMRVAIPAV 156

>PTNC_ECOL6 (P69802) Mannose permease IIC component (PTS system|
           mannose-specific EIIC component) (EIIC-Man) (EII-P-Man)
          Length = 266

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +2

Query: 56  ISSTVGLIGSRYSLGNNIGLGTPLSIQQQLLVLLKRSL---------KRADMLKLTSLLS 208
           I ST+ +I    S+G  I L  PL+   Q+L ++ R++         K AD   LT+ +S
Sbjct: 79  IISTILVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVAFQHAADKAADNGNLTA-IS 137

Query: 209 FDHISLAKFDLKHVQRPLV 265
           + H+S        V  P V
Sbjct: 138 WIHVSSLFLQAMRVAIPAV 156

>PTNC_ECO57 (P69803) Mannose permease IIC component (PTS system|
           mannose-specific EIIC component) (EIIC-Man) (EII-P-Man)
          Length = 266

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +2

Query: 56  ISSTVGLIGSRYSLGNNIGLGTPLSIQQQLLVLLKRSL---------KRADMLKLTSLLS 208
           I ST+ +I    S+G  I L  PL+   Q+L ++ R++         K AD   LT+ +S
Sbjct: 79  IISTILVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVAFQHAADKAADNGNLTA-IS 137

Query: 209 FDHISLAKFDLKHVQRPLV 265
           + H+S        V  P V
Sbjct: 138 WIHVSSLFLQAMRVAIPAV 156

>SECY_PAVLU (P28540) Preprotein translocase secY subunit|
          Length = 419

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = +2

Query: 122 PLSIQQQLLVLLKRSLKRADMLKLTSLLSFDHISLAKFDLKHVQRPLVSFGPNGSTKLRT 301
           P+     +L+ L  S+K+     + + +  D ++L +         L+ F     T +  
Sbjct: 262 PIIFSSSILLFLTTSIKQLPNANIATRVILDSVNLQQIFYFFTFLVLIIFFSFFYTLIIL 321

Query: 302 CPADVCKNLRLSSHVLSD 355
            P+D+ KNL+  S V+ D
Sbjct: 322 SPSDIAKNLKKMSSVIQD 339

>OXAA_CORGL (Q8NLK2) Membrane protein oxaA|
          Length = 422

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = -1

Query: 450 LDQDLEASDRFLSHEVLKLPLSFEIDKLSVPKSDSTWELNLKFLQTSAGQVLSFVEPL 277
           L+  +  S  FL+ E ++  L+  +  + +P   S     LK+L T+  +VLSFV PL
Sbjct: 133 LENPVFQSIGFLTPEEVESFLAGRVSNVPLPAYVSMPTEQLKYLSTTQAEVLSFVLPL 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,823,160
Number of Sequences: 219361
Number of extensions: 1546556
Number of successful extensions: 4167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4167
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)