ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104371.1| Zea mays PCO121406 mRNA sequence 260 3e-66
2gb|AY111082.1| Zea mays CL35819_1 mRNA sequence 202 7e-49
3ref|XM_550488.1| Oryza sativa (japonica cultivar-group), mRNA 103 5e-19
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
5dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic ... 103 5e-19
6dbj|AK104301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
7dbj|AK099246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
8dbj|AK074027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
9dbj|AK061483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
10gb|AC183492.1| Brassica oleracea Contig G, complete sequence 62 2e-06
11emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4,... 54 4e-04
12emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 54 4e-04
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
14dbj|AK067019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
15gb|BT014424.1| Lycopersicon esculentum clone 133742F, mRNA sequence 52 0.002
16gb|AY105917.1| Zea mays PCO144852 mRNA sequence 44 0.37
17gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 42 1.5
18gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 42 1.5
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
20gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence 42 1.5
21emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in ... 42 1.5
22gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold 42 1.5
23gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 42 1.5
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
25gb|AE009671.1| Brucella melitensis 16M chromosome II, section 33... 42 1.5
26ref|NM_204131.1| Gallus gallus LIM domain kinase 1 (LIMK1), mRNA 42 1.5
27gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 42 1.5
28dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
29emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 42 1.5
30dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 42 1.5
31dbj|AB073752.1| Gallus gallus limk1 mRNA for LIM kinase 1, compl... 42 1.5
32gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 5.8
33gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome... 40 5.8
34gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, com... 40 5.8
35gb|AE007283.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 5.8
36ref|XM_382043.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 5.8
37gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.8
38ref|XM_649544.1| Entamoeba histolytica HM-1:IMSS protein kinase ... 40 5.8
39gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 5.8
40emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.8
41emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in... 40 5.8
42emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chr... 40 5.8
43emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 ... 40 5.8
44dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.8
45gb|DQ337861.1| Uncultured bacterium clone Psedi_nirS-22 NirS (ni... 40 5.8
46gb|DQ337837.1| Uncultured bacterium clone P1m_nirS-08 NirS (nirS... 40 5.8
47emb|BX470138.7| Zebrafish DNA sequence from clone DKEY-245N4 in ... 40 5.8
48emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in... 40 5.8
49emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in... 40 5.8
50emb|CR381551.19| Zebrafish DNA sequence from clone DKEY-203A12 i... 40 5.8
51emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in ... 40 5.8
52gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome... 40 5.8
53emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chr... 40 5.8 
>gb|AY104371.1| Zea mays PCO121406 mRNA sequence
          Length = 1266

 Score =  260 bits (131), Expect = 3e-66
 Identities = 191/211 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaggtctccgacaagaccaagtcagcgctggctgcggccgagcagacggtgagca 60
           |||||||||||||||||||||||||||| || || ||||| |||||||||| ||||||||
Sbjct: 710 agttccaggtctccgacaagaccaagtccgcactcgctgccgccgagcagaaggtgagca 769

                                                                       
Query: 61  acgccgggtctgccatcatgaagaacaggtatgtcttcaccagcgcgtcatgggtgacca 120
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 770 gtgccgggtctgccatcatgaagaacaggtatgtcttcaccggcgcgtcatgggtcacca 829

                                                                       
Query: 121 gcgcgttcggcaaggtcgccaaggccgccacagatgtcggcacgatgacgaaggagaaga 180
           ||||||||  ||||||||||||| ||||||| || ||||| |||||||| ||||||||||
Sbjct: 830 gcgcgttcaacaaggtcgccaagaccgccacggacgtcgggacgatgaccaaggagaaga 889

                                          
Query: 181 tgtcggccgaggagcagcagaagggctccgg 211
           || | ||||||||||| || |||||||||||
Sbjct: 890 tggccgccgaggagcatcacaagggctccgg 920
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>gb|AY111082.1| Zea mays CL35819_1 mRNA sequence
          Length = 588

 Score =  202 bits (102), Expect = 7e-49
 Identities = 168/190 (88%)
 Strand = Plus / Minus

                                                                       
Query: 18  aagaccaagtcagcgctggctgcggccgagcagacggtgagcaacgccgggtctgccatc 77
           ||||| ||||||||| | || || |||||||||| ||||||||  |||||||||||||||
Sbjct: 572 aagacaaagtcagcgttcgccgctgccgagcagaaggtgagcagtgccgggtctgccatc 513

                                                                       
Query: 78  atgaagaacaggtatgtcttcaccagcgcgtcatgggtgaccagcgcgttcggcaaggtc 137
           |||||||||||||| ||||||||| ||||||| ||||| ||| ||||||||  |||||||
Sbjct: 512 atgaagaacaggtacgtcttcaccggcgcgtcgtgggtcaccggcgcgttcaacaaggtc 453

                                                                       
Query: 138 gccaaggccgccacagatgtcggcacgatgacgaaggagaagatgtcggccgaggagcag 197
           |||||||| ||||| || ||||| || ||||| |||||||||||| ||||||||||||||
Sbjct: 452 gccaaggctgccacggacgtcgggacaatgaccaaggagaagatggcggccgaggagcag 393

                     
Query: 198 cagaagggct 207
           ||||||||||
Sbjct: 392 cagaagggct 383
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>ref|XM_550488.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1027

 Score =  103 bits (52), Expect = 5e-19
 Identities = 169/208 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaggtctccgacaagaccaagtcagcgctggctgcggccgagcagacggtgagca 60
           |||||||||| || |||||||||||||| ||  | ||||| || || |||| ||||||||
Sbjct: 657 agttccaggtgtcggacaagaccaagtctgcattcgctgctgctgaacagaaggtgagca 716

                                                                       
Query: 61  acgccgggtctgccatcatgaagaacaggtatgtcttcaccagcgcgtcatgggtgacca 120
             || || ||||| ||||||||||| ||||||||||||||| | || || ||||| ||||
Sbjct: 717 ctgctggatctgctatcatgaagaataggtatgtcttcaccggggcttcgtgggtcacca 776

                                                                       
Query: 121 gcgcgttcggcaaggtcgccaaggccgccacagatgtcggcacgatgacgaaggagaaga 180
            ||| |||  ||| || |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 777 acgcattcaacaaagttgccaaggctgccactgatgttggtacaatgacaaaggagaaga 836

                                       
Query: 181 tgtcggccgaggagcagcagaagggctc 208
           || | || || || ||||| ||||||||
Sbjct: 837 tggcagctgaagaccagcataagggctc 864
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  103 bits (52), Expect = 5e-19
 Identities = 169/208 (81%)
 Strand = Plus / Plus

                                                                          
Query: 1      agttccaggtctccgacaagaccaagtcagcgctggctgcggccgagcagacggtgagca 60
              |||||||||| || |||||||||||||| ||  | ||||| || || |||| ||||||||
Sbjct: 700679 agttccaggtgtcggacaagaccaagtctgcattcgctgctgctgaacagaaggtgagca 700738

                                                                          
Query: 61     acgccgggtctgccatcatgaagaacaggtatgtcttcaccagcgcgtcatgggtgacca 120
                || || ||||| ||||||||||| ||||||||||||||| | || || ||||| ||||
Sbjct: 700739 ctgctggatctgctatcatgaagaataggtatgtcttcaccggggcttcgtgggtcacca 700798

                                                                          
Query: 121    gcgcgttcggcaaggtcgccaaggccgccacagatgtcggcacgatgacgaaggagaaga 180
               ||| |||  ||| || |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 700799 acgcattcaacaaagttgccaaggctgccactgatgttggtacaatgacaaaggagaaga 700858

                                          
Query: 181    tgtcggccgaggagcagcagaagggctc 208
              || | || || || ||||| ||||||||
Sbjct: 700859 tggcagctgaagaccagcataagggctc 700886
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>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
              clone:P0029D06
          Length = 150120

 Score =  103 bits (52), Expect = 5e-19
 Identities = 169/208 (81%)
 Strand = Plus / Plus

                                                                          
Query: 1      agttccaggtctccgacaagaccaagtcagcgctggctgcggccgagcagacggtgagca 60
              |||||||||| || |||||||||||||| ||  | ||||| || || |||| ||||||||
Sbjct: 107107 agttccaggtgtcggacaagaccaagtctgcattcgctgctgctgaacagaaggtgagca 107166

                                                                          
Query: 61     acgccgggtctgccatcatgaagaacaggtatgtcttcaccagcgcgtcatgggtgacca 120
                || || ||||| ||||||||||| ||||||||||||||| | || || ||||| ||||
Sbjct: 107167 ctgctggatctgctatcatgaagaataggtatgtcttcaccggggcttcgtgggtcacca 107226

                                                                          
Query: 121    gcgcgttcggcaaggtcgccaaggccgccacagatgtcggcacgatgacgaaggagaaga 180
               ||| |||  ||| || |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 107227 acgcattcaacaaagttgccaaggctgccactgatgttggtacaatgacaaaggagaaga 107286

                                          
Query: 181    tgtcggccgaggagcagcagaagggctc 208
              || | || || || ||||| ||||||||
Sbjct: 107287 tggcagctgaagaccagcataagggctc 107314
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>dbj|AK104301.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A08, full
           insert sequence
          Length = 1143

 Score =  103 bits (52), Expect = 5e-19
 Identities = 169/208 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaggtctccgacaagaccaagtcagcgctggctgcggccgagcagacggtgagca 60
           |||||||||| || |||||||||||||| ||  | ||||| || || |||| ||||||||
Sbjct: 657 agttccaggtgtcggacaagaccaagtctgcattcgctgctgctgaacagaaggtgagca 716

                                                                       
Query: 61  acgccgggtctgccatcatgaagaacaggtatgtcttcaccagcgcgtcatgggtgacca 120
             || || ||||| ||||||||||| ||||||||||||||| | || || ||||| ||||
Sbjct: 717 ctgctggatctgctatcatgaagaataggtatgtcttcaccggggcttcgtgggtcacca 776

                                                                       
Query: 121 gcgcgttcggcaaggtcgccaaggccgccacagatgtcggcacgatgacgaaggagaaga 180
            ||| |||  ||| || |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 777 acgcattcaacaaagttgccaaggctgccactgatgttggtacaatgacaaaggagaaga 836

                                       
Query: 181 tgtcggccgaggagcagcagaagggctc 208
           || | || || || ||||| ||||||||
Sbjct: 837 tggcagctgaagaccagcataagggctc 864
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>dbj|AK099246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H22, full
           insert sequence
          Length = 1193

 Score =  103 bits (52), Expect = 5e-19
 Identities = 169/208 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaggtctccgacaagaccaagtcagcgctggctgcggccgagcagacggtgagca 60
           |||||||||| || |||||||||||||| ||  | ||||| || || |||| ||||||||
Sbjct: 660 agttccaggtgtcggacaagaccaagtctgcattcgctgctgctgaacagaaggtgagca 719

                                                                       
Query: 61  acgccgggtctgccatcatgaagaacaggtatgtcttcaccagcgcgtcatgggtgacca 120
             || || ||||| ||||||||||| ||||||||||||||| | || || ||||| ||||
Sbjct: 720 ctgctggatctgctatcatgaagaataggtatgtcttcaccggggcttcgtgggtcacca 779

                                                                       
Query: 121 gcgcgttcggcaaggtcgccaaggccgccacagatgtcggcacgatgacgaaggagaaga 180
            ||| |||  ||| || |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 780 acgcattcaacaaagttgccaaggctgccactgatgttggtacaatgacaaaggagaaga 839

                                       
Query: 181 tgtcggccgaggagcagcagaagggctc 208
           || | || || || ||||| ||||||||
Sbjct: 840 tggcagctgaagaccagcataagggctc 867
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>dbj|AK074027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076C18, full
           insert sequence
          Length = 1026

 Score =  103 bits (52), Expect = 5e-19
 Identities = 169/208 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaggtctccgacaagaccaagtcagcgctggctgcggccgagcagacggtgagca 60
           |||||||||| || |||||||||||||| ||  | ||||| || || |||| ||||||||
Sbjct: 656 agttccaggtgtcggacaagaccaagtctgcattcgctgctgctgaacagaaggtgagca 715

                                                                       
Query: 61  acgccgggtctgccatcatgaagaacaggtatgtcttcaccagcgcgtcatgggtgacca 120
             || || ||||| ||||||||||| ||||||||||||||| | || || ||||| ||||
Sbjct: 716 ctgctggatctgctatcatgaagaataggtatgtcttcaccggggcttcgtgggtcacca 775

                                                                       
Query: 121 gcgcgttcggcaaggtcgccaaggccgccacagatgtcggcacgatgacgaaggagaaga 180
            ||| |||  ||| || |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 776 acgcattcaacaaagttgccaaggctgccactgatgttggtacaatgacaaaggagaaga 835

                                       
Query: 181 tgtcggccgaggagcagcagaagggctc 208
           || | || || || ||||| ||||||||
Sbjct: 836 tggcagctgaagaccagcataagggctc 863
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>dbj|AK061483.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H08, full
           insert sequence
          Length = 1147

 Score =  103 bits (52), Expect = 5e-19
 Identities = 169/208 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaggtctccgacaagaccaagtcagcgctggctgcggccgagcagacggtgagca 60
           |||||||||| || |||||||||||||| ||  | ||||| || || |||| ||||||||
Sbjct: 661 agttccaggtgtcggacaagaccaagtctgcattcgctgctgctgaacagaaggtgagca 720

                                                                       
Query: 61  acgccgggtctgccatcatgaagaacaggtatgtcttcaccagcgcgtcatgggtgacca 120
             || || ||||| ||||||||||| ||||||||||||||| | || || ||||| ||||
Sbjct: 721 ctgctggatctgctatcatgaagaataggtatgtcttcaccggggcttcgtgggtcacca 780

                                                                       
Query: 121 gcgcgttcggcaaggtcgccaaggccgccacagatgtcggcacgatgacgaaggagaaga 180
            ||| |||  ||| || |||||||| ||||| ||||| || || ||||| ||||||||||
Sbjct: 781 acgcattcaacaaagttgccaaggctgccactgatgttggtacaatgacaaaggagaaga 840

                                       
Query: 181 tgtcggccgaggagcagcagaagggctc 208
           || | || || || ||||| ||||||||
Sbjct: 841 tggcagctgaagaccagcataagggctc 868
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>gb|AC183492.1| Brassica oleracea Contig G, complete sequence
          Length = 236640

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 45    gagcagacggtgagcaacgccgggtctgccatcatgaagaacaggta 91
             |||||||||||||||||||| || || || |||||||||||||||||
Sbjct: 45207 gagcagacggtgagcaacgcgggctcggctatcatgaagaacaggta 45161
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>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01,
             complete sequence
          Length = 143157

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 69    tctgccatcatgaagaacaggtatgtc 95
             |||||||||||||||||||||||||||
Sbjct: 60418 tctgccatcatgaagaacaggtatgtc 60392
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>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
              complete sequence
          Length = 179644

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 69     tctgccatcatgaagaacaggtatgtc 95
              |||||||||||||||||||||||||||
Sbjct: 157488 tctgccatcatgaagaacaggtatgtc 157462
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 69       tctgccatcatgaagaacaggtatgtc 95
                |||||||||||||||||||||||||||
Sbjct: 30020736 tctgccatcatgaagaacaggtatgtc 30020710
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>dbj|AK067019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A03, full
           insert sequence
          Length = 1318

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 69  tctgccatcatgaagaacaggtatgtc 95
           |||||||||||||||||||||||||||
Sbjct: 688 tctgccatcatgaagaacaggtatgtc 714
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>gb|BT014424.1| Lycopersicon esculentum clone 133742F, mRNA sequence
          Length = 1011

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 45  gagcagacggtgagcaacgccgggtctgccatcatgaagaacaggtatgt 94
           ||||||||||| ||||  || || |||||||||||||||||||| |||||
Sbjct: 599 gagcagacggttagcactgctggatctgccatcatgaagaacagatatgt 648
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>gb|AY105917.1| Zea mays PCO144852 mRNA sequence
          Length = 478

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 69  tctgccatcatgaagaacaggtatgt 94
           ||||| ||||||||||||||||||||
Sbjct: 198 tctgctatcatgaagaacaggtatgt 223
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    ggcaaggtcgccaaggccgcc 149
              |||||||||||||||||||||
Sbjct: 952436 ggcaaggtcgccaaggccgcc 952416
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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 370    ttttgtttctctttgtagaag 390
              |||||||||||||||||||||
Sbjct: 181888 ttttgtttctctttgtagaag 181908
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 297      agaaaacaactttagatatat 317
                |||||||||||||||||||||
Sbjct: 30304562 agaaaacaactttagatatat 30304582
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>gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence
          Length = 120464

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 160   gcacgatgacgaaggagaagatgtc 184
             |||||||| ||||||||||||||||
Sbjct: 50727 gcacgatgccgaaggagaagatgtc 50751
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>emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in linkage group 1,
             complete sequence
          Length = 148544

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   aggattttgtttctctttgta 386
             |||||||||||||||||||||
Sbjct: 75768 aggattttgtttctctttgta 75788
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>gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold
          Length = 360990

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 269    gccatgttgtattatttattg 289
              |||||||||||||||||||||
Sbjct: 106848 gccatgttgtattatttattg 106868
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>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete
             sequence
          Length = 130359

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 297   agaaaacaactttagatatat 317
             |||||||||||||||||||||
Sbjct: 96242 agaaaacaactttagatatat 96262
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 297      agaaaacaactttagatatat 317
                |||||||||||||||||||||
Sbjct: 30395984 agaaaacaactttagatatat 30396004
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>gb|AE009671.1| Brucella melitensis 16M chromosome II, section 33 of 107 of the
            complete sequence
          Length = 14876

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 129  ggcaaggtcgccaaggccgcc 149
            |||||||||||||||||||||
Sbjct: 5329 ggcaaggtcgccaaggccgcc 5349
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>ref|NM_204131.1| Gallus gallus LIM domain kinase 1 (LIMK1), mRNA
          Length = 2796

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 160  gcacgatgacgaaggagaagatgtc 184
            |||||||| ||||||||||||||||
Sbjct: 1673 gcacgatgccgaaggagaagatgtc 1649
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    ggcaaggtcgccaaggccgcc 149
              |||||||||||||||||||||
Sbjct: 264757 ggcaaggtcgccaaggccgcc 264777
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>dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I03, full
            insert sequence
          Length = 2829

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 297  agaaaacaactttagatatat 317
            |||||||||||||||||||||
Sbjct: 2322 agaaaacaactttagatatat 2302
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    ggcaaggtcgccaaggccgcc 149
              |||||||||||||||||||||
Sbjct: 264826 ggcaaggtcgccaaggccgcc 264846
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>dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clone: CITD-2058I12,
             complete sequence
          Length = 106763

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 299   aaaacaactttagatatatagaaca 323
             |||||||||| ||||||||||||||
Sbjct: 31230 aaaacaacttcagatatatagaaca 31206
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>dbj|AB073752.1| Gallus gallus limk1 mRNA for LIM kinase 1, complete cds
          Length = 2796

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 160  gcacgatgacgaaggagaagatgtc 184
            |||||||| ||||||||||||||||
Sbjct: 1673 gcacgatgccgaaggagaagatgtc 1649
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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 405   cttggggttttacatgttattacaaaat 432
             ||||||| |||||||||||| |||||||
Sbjct: 73940 cttggggctttacatgttatcacaaaat 73913
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>gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome 19, complete sequence
          Length = 217821

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     gccgagcagacggtgagcaa 61
              ||||||||||||||||||||
Sbjct: 151927 gccgagcagacggtgagcaa 151946
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>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence
          Length = 175566

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     gccgagcagacggtgagcaa 61
              ||||||||||||||||||||
Sbjct: 167839 gccgagcagacggtgagcaa 167820
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>gb|AE007283.1| Sinorhizobium meliloti 1021 plasmid pSymA section 89 of 121 of the
            complete plasmid sequence
          Length = 10765

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  cgcccatccgctgatcgcca 245
            ||||||||||||||||||||
Sbjct: 4182 cgcccatccgctgatcgcca 4163
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>ref|XM_382043.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01867.1)
           partial mRNA
          Length = 1851

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 170 gaaggagaagatgtcggccgagga 193
           ||||||||||| ||||||||||||
Sbjct: 446 gaaggagaagaagtcggccgagga 423
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     cgctggctgcggccgagcag 50
              ||||||||||||||||||||
Sbjct: 739480 cgctggctgcggccgagcag 739499
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>ref|XM_649544.1| Entamoeba histolytica HM-1:IMSS protein kinase (48.t00015)  partial
           mRNA
          Length = 1536

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 272 atgttgtattatttattggt 291
           ||||||||||||||||||||
Sbjct: 236 atgttgtattatttattggt 255
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    cagcgctggctgcggccgag 47
             ||||||||||||||||||||
Sbjct: 31636 cagcgctggctgcggccgag 31655
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    ggtgaccagcgcgttcggca 132
              ||||||||||||||||||||
Sbjct: 265250 ggtgaccagcgcgttcggca 265269
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>emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in linkage group 24,
              complete sequence
          Length = 167553

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 370    ttttgtttctctttgtagaa 389
              ||||||||||||||||||||
Sbjct: 158144 ttttgtttctctttgtagaa 158163
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>emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chromosome 4, complete
             sequence
          Length = 152376

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   ttgtattatttattggtgga 294
             ||||||||||||||||||||
Sbjct: 41584 ttgtattatttattggtgga 41603
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>emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 in linkage group 7,
             complete sequence
          Length = 79440

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tcagcgctggctgcggccga 46
             ||||||||||||||||||||
Sbjct: 49956 tcagcgctggctgcggccga 49975
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 131     caaggtcgccaaggccgcca 150
               ||||||||||||||||||||
Sbjct: 2824097 caaggtcgccaaggccgcca 2824116
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>gb|DQ337861.1| Uncultured bacterium clone Psedi_nirS-22 NirS (nirS) gene, partial
           cds
          Length = 410

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 110 atgggtgaccagcgcgttcggcaa 133
           |||||||||||||||| |||||||
Sbjct: 267 atgggtgaccagcgcgctcggcaa 290
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>gb|DQ337837.1| Uncultured bacterium clone P1m_nirS-08 NirS (nirS) gene, partial
           cds
          Length = 410

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 110 atgggtgaccagcgcgttcggcaa 133
           |||||||||||||||| |||||||
Sbjct: 267 atgggtgaccagcgcgctcggcaa 290
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>emb|BX470138.7| Zebrafish DNA sequence from clone DKEY-245N4 in linkage group 5,
             complete sequence
          Length = 117265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tcagcgctggctgcggccga 46
             ||||||||||||||||||||
Sbjct: 52902 tcagcgctggctgcggccga 52883
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>emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in linkage group 24,
              complete sequence
          Length = 208279

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    ttttgtttctctttgtagaa 389
              ||||||||||||||||||||
Sbjct: 169755 ttttgtttctctttgtagaa 169736
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>emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in linkage group 13,
             complete sequence
          Length = 47008

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tcagcgctggctgcggccga 46
             ||||||||||||||||||||
Sbjct: 23350 tcagcgctggctgcggccga 23369
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>emb|CR381551.19| Zebrafish DNA sequence from clone DKEY-203A12 in linkage group 14,
             complete sequence
          Length = 156476

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tcagcgctggctgcggccga 46
             ||||||||||||||||||||
Sbjct: 91239 tcagcgctggctgcggccga 91258
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>emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in linkage group 11,
             complete sequence
          Length = 48855

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   aaaacaactttagatatata 318
             ||||||||||||||||||||
Sbjct: 39002 aaaacaactttagatatata 39021
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>gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome 17, complete sequence
          Length = 234088

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   ccaggattttgtttctcttt 383
             ||||||||||||||||||||
Sbjct: 77656 ccaggattttgtttctcttt 77675
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>emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chromosome 13, complete
              sequence
          Length = 196737

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    acccaggattttgtttctct 381
              ||||||||||||||||||||
Sbjct: 191561 acccaggattttgtttctct 191580


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,197,425
Number of Sequences: 3902068
Number of extensions: 4197425
Number of successful extensions: 88219
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87849
Number of HSP's gapped (non-prelim): 370
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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