ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13c20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JI23_HORVU (P32024) 23 kDa jasmonate-induced protein 323 2e-88
2JIPH_ATRCA (P42764) Jasmonate-induced protein homolog 47 5e-05
3LEPA_MYCS5 (Q4A5S3) GTP-binding protein lepA 32 1.1
4JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylatio... 31 2.4
5IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precurso... 31 2.4
6YP158_YEAST (Q99299) Protein YPL158C 31 3.1
7CARA_ACIAD (Q6F8M7) Carbamoyl-phosphate synthase small chain (EC... 30 5.3
8DYHA_CHLRE (Q39610) Dynein alpha chain, flagellar outer arm (DHC... 30 5.3

>JI23_HORVU (P32024) 23 kDa jasmonate-induced protein|
          Length = 210

 Score =  323 bits (829), Expect = 2e-88
 Identities = 149/201 (74%), Positives = 170/201 (84%), Gaps = 2/201 (0%)
 Frame = +3

Query: 3   FGIPISMQTVIATGEYKEPVTQKDVADYTMKMINAGGKDIDAQQFVDNLKIKYGNGISVK 182
           FG PIS QTVIATGEYKEP+TQKDVADY MKMINAGGKD++AQ+FVDNLK +YGNGI+VK
Sbjct: 6   FGTPISAQTVIATGEYKEPITQKDVADYAMKMINAGGKDVNAQKFVDNLKERYGNGIAVK 65

Query: 183 CLIYNATGTNLSFVTYKNWIGSIFDTPYPSDIQNGQWGAFLHVKPRAAAKGSTAAVVYRS 362
           CL+YNATG  L+F  Y +W G I+DTPYPSDIQNGQWGAFLHV P  AA GS  AVVYRS
Sbjct: 66  CLLYNATGATLNFAKYNDWHGHIYDTPYPSDIQNGQWGAFLHVHPSGAAAGSAGAVVYRS 125

Query: 363 RIPXXXXXCDWLFTWSVPFIGNNGVYTEIREQGHFPK--HWDYIYNVRLANSNLHSTDSN 536
           +IP     CDWLF+W+VP+IG NGVYTEIRE+GH+P    WDYIYNV+L NS++ S DSN
Sbjct: 126 KIPSSSSSCDWLFSWTVPYIGGNGVYTEIREEGHYPSVGSWDYIYNVKLKNSSVTSIDSN 185

Query: 537 YGYVSRANIGEGTTMNARAVF 599
           YGYVS+A+IGEGTTMNAR VF
Sbjct: 186 YGYVSKADIGEGTTMNARGVF 206



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>JIPH_ATRCA (P42764) Jasmonate-induced protein homolog|
          Length = 185

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 47/163 (28%), Positives = 63/163 (38%), Gaps = 15/163 (9%)
 Frame = +3

Query: 90  MKMINAGGKDIDAQQFVDNLKIKYGN-GISVKCL------IYNATGTNLSFVTYKNWIGS 248
           M    A G     ++ VD +  K  N G++V+        + N T  +++F    NW GS
Sbjct: 1   MASTQAMGMTEQQKKSVDEMVEKATNMGVNVQAQNSAVVSMINQTNVSMTFNENHNWSGS 60

Query: 249 IFDTPYPSDIQNGQWGAFLHVKPRAAAKGSTAAVVYRSRIPXXXXXCDWLFTWSVPF--- 419
           +  T YP  I   Q   F+H     A  GS  AVVY          C WL  W  P    
Sbjct: 61  VVGTGYPKSIPTKQSRQFIH--QGDAKDGSQGAVVYYGS-NANGEPCGWLLAWCAPTNVT 117

Query: 420 -IGNNGVYTEIREQGHFPK-HWDYI---YNVRLANSNLHSTDS 533
               N VY +   Q  F    WD I    +V  A +N    D+
Sbjct: 118 PTKPNRVYVDCGAQSKFDTISWDTIKAKLDVGPATTNFTDVDT 160



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>LEPA_MYCS5 (Q4A5S3) GTP-binding protein lepA|
          Length = 605

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
 Frame = +3

Query: 75  VADYTMKMINAGGKDIDAQQFVDNLKIKYGNGISVKCLIYNATGTNLSFVTYKNWIGSIF 254
           +AD  +++ N   K     QF+D+++++   GIS+K         N   + YK++I  + 
Sbjct: 22  LADRILELTNTVSKRELTNQFLDSMELEKERGISIK--------LNAVQLKYKDYIFQLI 73

Query: 255 DTPYPSDIQ-------NGQWGAFLHVKPRAAAKGSTAAVVY 356
           DTP   D             GA L V      +  T A VY
Sbjct: 74  DTPGHVDFTYEVSRSLAASEGALLIVDATQGIQAQTLANVY 114



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>JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylation protein 1B (EC|
            1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and
            leucine-rich repeat protein 10)
          Length = 1259

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = -1

Query: 323  CSWFDVEK-----CPPLSILNIRWVGCIKDTANPILVRDETQIGTGSIVDEAFYRYSITV 159
            CSW  V       CP L  LN++WV  +KD     L+   T    G I + +  R +IT 
Sbjct: 1082 CSWIAVSALCSSCCPLLRTLNVQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLR-NITE 1140

Query: 158  LDLQVVD 138
            L L  +D
Sbjct: 1141 LRLAGLD 1147



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>IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)|
           (CD124 antigen)
          Length = 809

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = +3

Query: 306 HVKPRAAAKGSTAAVVYRSRIPXXXXXCDWLFTWSVPFIGNNGVYTEIREQGHFPKHWD- 482
           HVKPRA    +  A+ +            WL TWS P+   N +++E+    +  K  D 
Sbjct: 120 HVKPRAPQNLTVHAISHT-----------WLLTWSNPYPLKNHLWSELTYLVNISKEDDP 168

Query: 483 ---YIYNVRLANSNLHSTDS 533
               IYNV   +  L  T S
Sbjct: 169 TDFKIYNVTYMDPTLRVTAS 188



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>YP158_YEAST (Q99299) Protein YPL158C|
          Length = 758

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = +3

Query: 417 FIGNNGVYTEIREQGHFPKHWDYIYNVRLANSNLHSTDSNYGYVSRANIGEGTTMNARAV 596
           F   NGV  +  E G+     DY      +N+N +S  S+ GY S ANI + TT + R V
Sbjct: 49  FAAENGVSRD--EDGNSQTLSDY---TSTSNTNTNSGYSSNGYYSFANISDNTTSSPRIV 103



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>CARA_ACIAD (Q6F8M7) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 379

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +3

Query: 396 LFTWSVPFIGNNGVYTEIREQGHFPKHWD---YIYNVRLANSNLHSTDSNYGYVSRANI 563
           L T + P IGN G   E  E G   K W     I ++ L +SN  S  S   Y+ + N+
Sbjct: 52  LVTLTYPHIGNTGCNEEDTESGRIHKVWANGLIIRDLPLLHSNFRSEQSLAEYLIQHNV 110



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>DYHA_CHLRE (Q39610) Dynein alpha chain, flagellar outer arm (DHC alpha)|
          Length = 4499

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 317  WFDVEKCPPLSILNIRWVGCIKDTANPILVRDETQ 213
            WFD  K  P +I N ++V C+  TA   ++    Q
Sbjct: 2464 WFDRAKLTPKNINNTQYVACMNPTAGSFIINPRLQ 2498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,370,416
Number of Sequences: 219361
Number of extensions: 2161988
Number of successful extensions: 5533
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5531
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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