ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13c19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104267.1| Zea mays PCO085704 mRNA sequence 412 e-112
2dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 367 2e-98
3gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 90 9e-15
4emb|X98487.1|LMPGKCG L.mexicana PGKC gene for glycosomal phospho... 44 0.46
5emb|X98486.1|LMPGKBC L.mexicana PGKB gene for cytosolic phosphog... 44 0.46
6gb|AF339905.1|AF339905S1 Leishmania major phosphoglycerate kinas... 44 0.46
7gb|BC007632.1| Homo sapiens RIMS binding protein 2, mRNA (cDNA c... 42 1.8
8ref|NM_015347.3| Homo sapiens RIMS binding protein 2 (RIMBP2), mRNA 42 1.8
9gb|AC063926.36| Homo sapiens 12 BAC RP11-117L5 (Roswell Park Can... 42 1.8
10emb|AL683878.9| Mouse DNA sequence from clone RP23-201G13 on chr... 42 1.8
11dbj|AB002316.1| Human mRNA for KIAA0318 gene, partial cds 42 1.8
12ref|NM_126328.2| Arabidopsis thaliana unknown protein AT2G02730 ... 40 7.2
13ref|NM_201673.1| Arabidopsis thaliana unknown protein AT2G02730 ... 40 7.2
14emb|BX914222.9| Zebrafish DNA sequence from clone DKEYP-108A2 in... 40 7.2
15emb|Z77664.1|CEF53H10 Caenorhabditis elegans Cosmid F53H10, comp... 40 7.2
16gb|AC127696.4| Mus musculus BAC clone RP23-459J11 from chromosom... 40 7.2
17gb|AC105336.14| Mus musculus chromosome 3, clone RP24-277J22, co... 40 7.2
18gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, comple... 40 7.2
19gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map... 40 7.2
20dbj|AK038340.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 7.2
21ref|NM_073368.4| Caenorhabditis elegans F53H10.2 (F53H10.2) mRNA... 40 7.2
22emb|BX819013.1|CNS0A9UP Arabidopsis thaliana Full-length cDNA Co... 40 7.2
23gb|BT005277.1| Arabidopsis thaliana At2g02730 mRNA, complete cds 40 7.2
24gb|AY088742.1| Arabidopsis thaliana clone 93828 mRNA, complete s... 40 7.2
25gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, comple... 40 7.2
26dbj|AK119082.1| Arabidopsis thaliana At2g02730 mRNA for unknown ... 40 7.2
27ref|XM_317666.2| Anopheles gambiae str. PEST ENSANGP00000018515 ... 40 7.2
28gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, com... 40 7.2
29emb|BX957279.13| Zebrafish DNA sequence from clone DKEY-218N20 i... 40 7.2
30emb|BX511258.6| Zebrafish DNA sequence from clone CH211-81E5 in ... 40 7.2
31emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chr... 40 7.2 
>gb|AY104267.1| Zea mays PCO085704 mRNA sequence
          Length = 1009

 Score =  412 bits (208), Expect = e-112
 Identities = 448/528 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaagggcgtaaatcaaggagaaggttcgagcgcctatgacatggctcttatccaagct 63
           |||||||| ||||||||||||   | |||| |  |||||||||| || ||||| ||||||
Sbjct: 261 atgaagggtgtaaatcaaggaactgcttcgggtccctatgacattgcacttattcaagct 320

                                                                       
Query: 64  cagattcggcatttagcccaagaagtcagagatttaactttgtcaaagcccattaccata 123
           ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 321 cagattcggaatttagcccaagaagtcagagatttgacattgtcaaagcccattaccata 380

                                                                       
Query: 124 ttgagtggcaaatcggactccggaggtggtttatcgtcctacatactgccagcagctgca 183
            ||| ||||||||| ||||| |||||  ||||||| |||||||||||||||||||| |||
Sbjct: 381 ctgaatggcaaatctgactcgggaggcagtttatcatcctacatactgccagcagcagca 440

                                                                       
Query: 184 gttggagcattaggttattgctatatgtggtgtaagggatggtccttctcagatgtcatg 243
           ||||||||| | ||||||||||| |||||||| ||||| | |||  ||||||||||||||
Sbjct: 441 gttggagcaatgggttattgctacatgtggtggaaggggttgtctctctcagatgtcatg 500

                                                                       
Query: 244 tttgtcacaaaacgcaatatggccagtgctgtcgatagcatgtcgaagcaattggagcaa 303
           ||||||||||||| ||| ||||| | ||||||  | |||||||| ||||| |||||||||
Sbjct: 501 tttgtcacaaaacacaacatggcaaatgctgttcagagcatgtcaaagcagttggagcaa 560

                                                                       
Query: 304 gtttcttcagcgctagcagcaacgaaaagacatttaacaaaacgccttgagaatttggat 363
           ||||| ||||| ||||| ||||| ||||||||| ||||  |||| |||||||||||||||
Sbjct: 561 gtttcatcagcactagctgcaacaaaaagacatctaactcaacggcttgagaatttggat 620

                                                                       
Query: 364 ggcaaaatggacgagcaagtggaagtctccaaacaaatccggaatgaggtcgttgatgtt 423
           ||||||||||| || ||||| || |||||||||   ||  | |||||||||  |||||||
Sbjct: 621 ggcaaaatggatgaacaagtagaggtctccaaagctattagaaatgaggtcaatgatgtt 680

                                                                       
Query: 424 aaaactgatctgtctcaaattggctttgacgttgaagcaattcaacagatggtagccgga 483
           |||  ||| |||||||||||||| ||||| || ||| |||||||  | ||||| || |||
Sbjct: 681 aaagatgacctgtctcaaattggatttgatgtcgaatcaattcagaaaatggttgctgga 740

                                                           
Query: 484 ttggaagagaagatcgagctgcttgacaacaagcaggatgcggctaat 531
           ||||| |  ||||||||| | ||||| ||||| ||||| | |||||||
Sbjct: 741 ttggagggaaagatcgagttacttgagaacaaacaggacgtggctaat 788
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>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full
           insert sequence
          Length = 1415

 Score =  367 bits (185), Expect = 2e-98
 Identities = 437/521 (83%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaagggcgtaaatcaaggagaaggttcgagcgcctatgacatggctcttatccaagct 63
           ||||| || ||||| ||||||||||||||||| ||||||||||| || ||| | ||| ||
Sbjct: 274 atgaaaggtgtaaaccaaggagaaggttcgagtgcctatgacatcgcccttcttcaatct 333

                                                                       
Query: 64  cagattcggcatttagcccaagaagtcagagatttaactttgtcaaagcccattaccata 123
           ||||||||  ||||||| |||||||| |||||||| ||| | |||| ||| |||||||||
Sbjct: 334 cagattcgaaatttagcacaagaagttagagatttgactatatcaaggcctattaccata 393

                                                                       
Query: 124 ttgagtggcaaatcggactccggaggtggtttatcgtcctacatactgccagcagctgca 183
           ||||||||||| || ||||| |||||  ||||||| |||||||||||||| |||||||||
Sbjct: 394 ttgagtggcaactccgactctggaggcagtttatcctcctacatactgcctgcagctgca 453

                                                                       
Query: 184 gttggagcattaggttattgctatatgtggtgtaagggatggtccttctcagatgtcatg 243
           ||||||||| | ||||| |||||||||||||| ||||||| |||||| || |||||||||
Sbjct: 454 gttggagcaatgggttactgctatatgtggtggaagggattgtccttatcggatgtcatg 513

                                                                       
Query: 244 tttgtcacaaaacgcaatatggccagtgctgtcgatagcatgtcgaagcaattggagcaa 303
           ||||| || |||||||| ||| |||  ||||| || || ||||||||||||||||| |||
Sbjct: 514 tttgttaccaaacgcaacatgaccaaagctgttgagagtatgtcgaagcaattggatcaa 573

                                                                       
Query: 304 gtttcttcagcgctagcagcaacgaaaagacatttaacaaaacgccttgagaatttggat 363
           || ||||||||  |||| ||||| ||||| ||| |||   | ||||| || ||||| |||
Sbjct: 574 gtgtcttcagctttagctgcaacaaaaaggcatctaagtcagcgcctggaaaatttagat 633

                                                                       
Query: 364 ggcaaaatggacgagcaagtggaagtctccaaacaaatccggaatgaggtcgttgatgtt 423
           || |||||||| ||||||||||| |||||||||   ||  | || |||||   |||||| 
Sbjct: 634 gggaaaatggatgagcaagtggaggtctccaaaattattagaaacgaggtgaatgatgtc 693

                                                                       
Query: 424 aaaactgatctgtctcaaattggctttgacgttgaagcaattcaacagatggtagccgga 483
           |||  |||||||||||||||||| |||||  ||| |||||| ||||||||||| || |||
Sbjct: 694 aaagatgatctgtctcaaattggatttgatattgcagcaatccaacagatggttgctgga 753

                                                    
Query: 484 ttggaagagaagatcgagctgcttgacaacaagcaggatgc 524
           ||||||| |||||||||| ||||||| || || ||||||||
Sbjct: 754 ttggaagggaagatcgagttgcttgataataaacaggatgc 794
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>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0087J09, complete sequence
          Length = 153351

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                         
Query: 152   gtttatcgtcctacatactgccagcagctgcagttggagcattaggttattgctatatgt 211
             ||||||| |||||||||||||| |||||||||||||||||| | ||||| ||||||||||
Sbjct: 51911 gtttatcctcctacatactgcctgcagctgcagttggagcaatgggttactgctatatgt 51970

                      
Query: 212   ggtgtaagg 220
             |||| ||||
Sbjct: 51971 ggtggaagg 51979



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 218   agggatggtccttctcagatgtcatgtttgtcacaaaacgcaatatggccagtgctgtcg 277
             |||||| |||||| || |||||||||||||| || |||||||| ||| |||  ||||| |
Sbjct: 52580 agggattgtccttatcggatgtcatgtttgttaccaaacgcaacatgaccaaagctgttg 52639

                                                  
Query: 278   atagcatgtcgaagcaattggagcaagtttcttcagc 314
             | || ||||||||||||||||| ||||| ||||||||
Sbjct: 52640 agagtatgtcgaagcaattggatcaagtgtcttcagc 52676



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                         
Query: 64    cagattcggcatttagcccaagaagtcagagatttaactttgtcaaagcccattaccata 123
             ||||||||  ||||||| |||||||| |||||||| ||| | |||| ||| |||||||||
Sbjct: 51343 cagattcgaaatttagcacaagaagttagagatttgactatatcaaggcctattaccata 51402

                                        
Query: 124   ttgagtggcaaatcggactccggaggt 150
             ||||||||||| || ||||| ||||||
Sbjct: 51403 ttgagtggcaactccgactctggaggt 51429



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 429   tgatctgtctcaaattggctttgacgttgaagcaattcaacagatggtagccggattgg 487
             |||||||||||||||||| |||||  ||| |||||| ||||||||||| || |||||||
Sbjct: 53519 tgatctgtctcaaattggatttgatattgcagcaatccaacagatggttgctggattgg 53577



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 4     atgaagggcgtaaatcaaggagaaggttcgagcgcctatgacat 47
             ||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 51138 atgaaaggtgtaaaccaaggagaaggttcgagtgcctatgacat 51181



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 346   cgccttgagaatttggatggcaaaatggacgagcaagtggaagtctccaaa 396
             ||||| || ||||| ||||| |||||||| ||||||||||| |||||||||
Sbjct: 52797 cgcctggaaaatttagatgggaaaatggatgagcaagtggaggtctccaaa 52847
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>emb|X98487.1|LMPGKCG L.mexicana PGKC gene for glycosomal phosphoglycerate kinase
          Length = 1440

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 493 aagatcgagctgcttgacaaca 514
           ||||||||||||||||||||||
Sbjct: 658 aagatcgagctgcttgacaaca 679
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>emb|X98486.1|LMPGKBC L.mexicana PGKB gene for cytosolic phosphoglycerate kinase
          Length = 1254

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 493 aagatcgagctgcttgacaaca 514
           ||||||||||||||||||||||
Sbjct: 658 aagatcgagctgcttgacaaca 679
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>gb|AF339905.1|AF339905S1 Leishmania major phosphoglycerate kinase B and phosphoglycerate
            kinase C genes, complete cds; and unknown genes
          Length = 26435

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 493  aagatcgagctgcttgacaaca 514
            ||||||||||||||||||||||
Sbjct: 3492 aagatcgagctgcttgacaaca 3513



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 493 aagatcgagctgcttgacaaca 514
           ||||||||||||||||||||||
Sbjct: 826 aagatcgagctgcttgacaaca 847
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>gb|BC007632.1| Homo sapiens RIMS binding protein 2, mRNA (cDNA clone MGC:15831
           IMAGE:3507574), complete cds
          Length = 3902

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 173 cagcagctgcagttggagcat 193
           |||||||||||||||||||||
Sbjct: 436 cagcagctgcagttggagcat 456
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>ref|NM_015347.3| Homo sapiens RIMS binding protein 2 (RIMBP2), mRNA
          Length = 6322

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 173 cagcagctgcagttggagcat 193
           |||||||||||||||||||||
Sbjct: 189 cagcagctgcagttggagcat 209
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>gb|AC063926.36| Homo sapiens 12 BAC RP11-117L5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 192774

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   cagcagctgcagttggagcat 193
             |||||||||||||||||||||
Sbjct: 96422 cagcagctgcagttggagcat 96442
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>emb|AL683878.9| Mouse DNA sequence from clone RP23-201G13 on chromosome 2, complete
             sequence
          Length = 195221

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   gatgtcatgtttgtcacaaaa 255
             |||||||||||||||||||||
Sbjct: 35565 gatgtcatgtttgtcacaaaa 35545
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>dbj|AB002316.1| Human mRNA for KIAA0318 gene, partial cds
          Length = 6322

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 173 cagcagctgcagttggagcat 193
           |||||||||||||||||||||
Sbjct: 189 cagcagctgcagttggagcat 209
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>ref|NM_126328.2| Arabidopsis thaliana unknown protein AT2G02730 transcript variant
           AT2G02730.1 mRNA, complete cds
          Length = 1514

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 ggagcattaggttattgctatatgtggt 214
           ||||||||||| ||| ||||||||||||
Sbjct: 392 ggagcattaggctatggctatatgtggt 419
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>ref|NM_201673.1| Arabidopsis thaliana unknown protein AT2G02730 transcript variant
           AT2G02730.2 mRNA, complete cds
          Length = 1292

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 ggagcattaggttattgctatatgtggt 214
           ||||||||||| ||| ||||||||||||
Sbjct: 395 ggagcattaggctatggctatatgtggt 422
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>emb|BX914222.9| Zebrafish DNA sequence from clone DKEYP-108A2 in linkage group 11,
              complete sequence
          Length = 134368

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    ttctcagatgtcatgtttgt 248
              ||||||||||||||||||||
Sbjct: 121070 ttctcagatgtcatgtttgt 121051
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>emb|Z77664.1|CEF53H10 Caenorhabditis elegans Cosmid F53H10, complete sequence
          Length = 22916

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 89   tcagagatttaactttgtcaaagc 112
            |||||||||||||||| |||||||
Sbjct: 5252 tcagagatttaactttttcaaagc 5275
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>gb|AC127696.4| Mus musculus BAC clone RP23-459J11 from chromosome 7, complete sequence
          Length = 168580

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tcagagatttaactttgtca 108
              ||||||||||||||||||||
Sbjct: 157558 tcagagatttaactttgtca 157577
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>gb|AC105336.14| Mus musculus chromosome 3, clone RP24-277J22, complete sequence
          Length = 176399

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    tagcagcaacgaaaagacat 336
              ||||||||||||||||||||
Sbjct: 104981 tagcagcaacgaaaagacat 105000
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>gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, complete sequence
          Length = 161405

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   cgaaaagacatttaacaaaa 345
             ||||||||||||||||||||
Sbjct: 90636 cgaaaagacatttaacaaaa 90617
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>gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map CIC11A04, complete
             sequence
          Length = 81004

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 187   ggagcattaggttattgctatatgtggt 214
             ||||||||||| ||| ||||||||||||
Sbjct: 60810 ggagcattaggctatggctatatgtggt 60837
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>dbj|AK038340.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130096H16 product:Warning:
           possibly chimeric clone, full insert sequence
          Length = 1538

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 114 cattaccatattgagtggcaaatc 137
           ||||||||||||| ||||||||||
Sbjct: 206 cattaccatattgtgtggcaaatc 183
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>ref|NM_073368.4| Caenorhabditis elegans F53H10.2 (F53H10.2) mRNA, complete cds
          Length = 3152

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 89   tcagagatttaactttgtcaaagc 112
            |||||||||||||||| |||||||
Sbjct: 2347 tcagagatttaactttttcaaagc 2324
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>emb|BX819013.1|CNS0A9UP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZG02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1296

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 ggagcattaggttattgctatatgtggt 214
           ||||||||||| ||| ||||||||||||
Sbjct: 398 ggagcattaggctatggctatatgtggt 425
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>gb|BT005277.1| Arabidopsis thaliana At2g02730 mRNA, complete cds
          Length = 831

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 ggagcattaggttattgctatatgtggt 214
           ||||||||||| ||| ||||||||||||
Sbjct: 301 ggagcattaggctatggctatatgtggt 328
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>gb|AY088742.1| Arabidopsis thaliana clone 93828 mRNA, complete sequence
          Length = 1194

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 ggagcattaggttattgctatatgtggt 214
           ||||||||||| ||| ||||||||||||
Sbjct: 393 ggagcattaggctatggctatatgtggt 420
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>gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, complete sequence
          Length = 190137

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   cgaaaagacatttaacaaaa 345
             ||||||||||||||||||||
Sbjct: 83375 cgaaaagacatttaacaaaa 83394



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  cgaaaagacatttaacaaaa 345
            ||||||||||||||||||||
Sbjct: 4383 cgaaaagacatttaacaaaa 4364
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>dbj|AK119082.1| Arabidopsis thaliana At2g02730 mRNA for unknown protein, complete
           cds, clone: RAFL21-43-L15
          Length = 1177

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 187 ggagcattaggttattgctatatgtggt 214
           ||||||||||| ||| ||||||||||||
Sbjct: 384 ggagcattaggctatggctatatgtggt 411
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>ref|XM_317666.2| Anopheles gambiae str. PEST ENSANGP00000018515
           (ENSANGG00000016026), partial mRNA
          Length = 1221

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 490 gagaagatcgagctgcttga 509
           ||||||||||||||||||||
Sbjct: 907 gagaagatcgagctgcttga 926
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>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tcagagatttaactttgtca 108
              ||||||||||||||||||||
Sbjct: 129770 tcagagatttaactttgtca 129751
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>emb|BX957279.13| Zebrafish DNA sequence from clone DKEY-218N20 in linkage group 19,
              complete sequence
          Length = 198752

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    attaggttattgctatatgt 211
              ||||||||||||||||||||
Sbjct: 145839 attaggttattgctatatgt 145820
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>emb|BX511258.6| Zebrafish DNA sequence from clone CH211-81E5 in linkage group 19,
             complete sequence
          Length = 200076

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   attaggttattgctatatgt 211
             ||||||||||||||||||||
Sbjct: 87974 attaggttattgctatatgt 87955
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>emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chromosome X, complete
              sequence
          Length = 221920

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 114    cattaccatattgagtggcaaatc 137
              ||||||||||||| ||||||||||
Sbjct: 139785 cattaccatattgtgtggcaaatc 139762


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,381,120
Number of Sequences: 3902068
Number of extensions: 4381120
Number of successful extensions: 79274
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79221
Number of HSP's gapped (non-prelim): 51
length of query: 531
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 508
effective length of database: 17,143,297,704
effective search space: 8708795233632
effective search space used: 8708795233632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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