>N2B_HAEIR (P46441) Putative ATPase N2B (HFN2B)|
          Length = 464

 Score = 75.9 bits (185), Expect = 9e-14
 Identities = 57/195 (29%), Positives = 89/195 (45%)
 Frame = +1

Query: 22  RFHFHEAMLEIHDHMHDVWKRRDDGKSMESSAFSWISGLPFDAKIKEWLIGEEKYKQDKH 201
           R HF+  M ++H  +H V + R      +  AF+    LPFD                  
Sbjct: 142 RVHFNSFMSKVHGLIHKVKQERGP----QDRAFNSEKPLPFDPT---------------- 181

Query: 202 QKHILLAVADKFLVDRQANKCGASILCFDEIQTIDVFAIVALSGILSRLLSTGTVLVATS 381
                L VA+       AN+  + ++CFDE Q  D+   + L  + + L + G V +ATS
Sbjct: 182 -----LPVAEMI-----ANE--SWLICFDEFQVTDIADAMILKSLFTHLFNEGIVCIATS 229

Query: 382 NKAPEDLNQDGMQREIFLELLSKLDETCNKILVGTETDYRRLIPTDGSTQIHYYWPTNPD 561
           N+ P DL ++G+QR  F+  +  L   CN   + +  DYRR I   G T  +Y+  T  D
Sbjct: 230 NRHPNDLYKNGLQRSNFIPFIGVLLNRCNVAAMDSGVDYRR-IAQSGDT--NYFVTTQTD 286

Query: 562 TRSMFEAMWHDITNQ 606
            +S  E M+  + +Q
Sbjct: 287 AKSQMERMFKILCSQ 301

>YHCM_ECOLI (P64612) Hypothetical protein yhcM|
          Length = 375

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
 Frame = +1

Query: 73  VWKRRDDGKSMESSAFSWISGLPFDAKIKEWLI--------GEEKYKQDKH--------- 201
           +W +R+D K           G+    + K WL+        GE K +   H         
Sbjct: 59  LWGKREDTKHTPVRGLYMWGGV---GRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEE 115

Query: 202 ------QKHILLAVADKFLVDRQANKCGASILCFDEIQTIDVFAIVALSGILSRLLSTGT 363
                 Q   L  +AD+F       K    +LCFDE    D+   + L G++  L + G 
Sbjct: 116 LTALQGQTDPLEIIADRF-------KAETDVLCFDEFFVSDITDAMLLGGLMKALFARGI 168

Query: 364 VLVATSNKAPEDLNQDGMQREIFLELLSKLDETCNKILVGTETDYRRLIPTDGSTQIHYY 543
            LVATSN  P++L ++G+QR  FL  +  + + C+ + V    DYR        TQ H +
Sbjct: 169 TLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYR----LRTLTQAHLW 224

Query: 544 W-PTNPDTRSMFEAMW 588
             P + +TR+  + +W
Sbjct: 225 LSPLHDETRAQMDKLW 240

>YHCM_ECO57 (P64613) Hypothetical protein yhcM|
          Length = 375

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
 Frame = +1

Query: 73  VWKRRDDGKSMESSAFSWISGLPFDAKIKEWLI--------GEEKYKQDKH--------- 201
           +W +R+D K           G+    + K WL+        GE K +   H         
Sbjct: 59  LWGKREDTKHTPVRGLYMWGGV---GRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEE 115

Query: 202 ------QKHILLAVADKFLVDRQANKCGASILCFDEIQTIDVFAIVALSGILSRLLSTGT 363
                 Q   L  +AD+F       K    +LCFDE    D+   + L G++  L + G 
Sbjct: 116 LTALQGQTDPLEIIADRF-------KAETDVLCFDEFFVSDITDAMLLGGLMKALFARGI 168

Query: 364 VLVATSNKAPEDLNQDGMQREIFLELLSKLDETCNKILVGTETDYRRLIPTDGSTQIHYY 543
            LVATSN  P++L ++G+QR  FL  +  + + C+ + V    DYR        TQ H +
Sbjct: 169 TLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYR----LRTLTQAHLW 224

Query: 544 W-PTNPDTRSMFEAMW 588
             P + +TR+  + +W
Sbjct: 225 LSPLHDETRAQMDKLW 240

>AFG1_YEAST (P32317) Protein AFG1|
          Length = 509

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 2/183 (1%)
 Frame = +1

Query: 13  TGXRFHFHEAMLEIHDHMHDVWKRRDDGKSMESSAFSWISGLPFDAKIKEWLIGEEKYKQ 192
           T  R HFH+ M  +H   H++ + ++                     +KE  +G+ K K+
Sbjct: 148 TKKRIHFHQFMQYVHKRSHEIVREQN---------------------LKE--LGDAKGKE 184

Query: 193 DKHQKHILLAVADKFLVDRQANKCGASILCFDEIQTIDVFAIVALSGILSRLLST--GTV 366
                 +   +A+            + +LCFDE Q  DV   + L  +++ LLS   G V
Sbjct: 185 IDTVPFLAAEIANN-----------SHVLCFDEFQVTDVADAMILRRLMTALLSDDYGVV 233

Query: 367 LVATSNKAPEDLNQDGMQREIFLELLSKLDETCNKILVGTETDYRRLIPTDGSTQIHYYW 546
           L ATSN+ P++L  +G+QR+ F+  +  +      I + + TDYR+ IP   S+   YY+
Sbjct: 234 LFATSNRHPDELYINGVQRQSFIPCIELIKHRTKVIFLNSPTDYRK-IPRPVSSV--YYF 290

Query: 547 PTN 555
           P++
Sbjct: 291 PSD 293

>YHR3_VACCV (P17369) Hypothetical host range 27.4 kDa protein|
          Length = 237

 Score = 32.7 bits (73), Expect = 0.91
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = +1

Query: 376 TSNKAPEDLNQDGMQREIFLELLSKLDETCNKILVGTETDYRRLIPTDGSTQIHYYWPTN 555
           TS+K PE ++Q   +   +++L ++      KI+VG  T +  LI TD   +I + +  N
Sbjct: 122 TSSKIPESISQ---RYNDYIDLCNQELNEMKKIMVGGNTMF-SLIFTDHGAKIIHRYANN 177

Query: 556 PDTRSMFEAMWHDITNQA 609
           P+ R  +E   + I  +A
Sbjct: 178 PELREYYELKQNKIYVEA 195

>PFDB_AERPE (Q9YC11) Prefoldin beta subunit (GimC beta subunit)|
          Length = 123

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 355 TGTVLVATS-NKAPEDLNQDGMQREIFLELLSKLDETCNKILVGTETDYRRLI 510
           TG VLV  S N+  EDLN+     E+ L++L   +E   K L   E++ RRL+
Sbjct: 60  TGFVLVKKSKNEVVEDLNKRKEDLELKLKVLKSQEEHLKKELERIESELRRLL 112

>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent|
            isoleucine adenylase (IleA) (Isoleucine activase);
            ATP-dependent cysteine adenylase (CysA) (Cysteine
            activase); ATP-dependent leucine adenylase (LeuA)
            (Leucine activase); ATP-depe
          Length = 5255

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 172  GEEKYKQDKH--QKHILLAVADKFLVDRQANKCGASILCFDEIQTIDVFAIVA 324
            G+ K  Q  H  Q++ +L + +KF V  Q N  G S LCFD +   DVF  ++
Sbjct: 1228 GKPKGVQITHVPQRNTILDINEKFNVTEQDNIMGISSLCFD-LSVYDVFGALS 1279

>INT2_CHICK (Q5ZKU4) Integrator complex subunit 2 (Int2)|
          Length = 1192

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 283 FDEIQTIDVFAIVALSGILSRLLSTGTVLVATSNKAPEDLNQDGMQ-REIFLELLSKLDE 459
           F+ +Q +DV  + ALS    RLL    V +A    AP D +Q   Q +++ L LLS + E
Sbjct: 15  FEAMQKVDVVRLAALSDPELRLLLPCLVRMALC--APADQSQSWAQDKKLILRLLSGV-E 71

Query: 460 TCNKILVGTETDYRRL 507
             N I+     D+  L
Sbjct: 72  AVNSIVALLSVDFHAL 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,316,914
Number of Sequences: 219361
Number of extensions: 1623817
Number of successful extensions: 4185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4179
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)