ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9i14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC087518.5| Homo sapiens chromosome , clone RP11-359E19, comp... 42 0.91
2gb|AC022733.8| Homo sapiens chromosome 8, clone RP11-470M17, com... 42 0.91
3ref|XM_759973.1| Theileria parva strain Muguga phosphate transpo... 40 3.6
4emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 3.6
5gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, c... 40 3.6
6gb|AC091154.3| Homo sapiens chromosome 17, clone RP11-750B16, co... 40 3.6
7gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, compl... 40 3.6
8gb|AC067961.8| Homo sapiens BAC clone RP11-59F3 from 2, complete... 40 3.6
9dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, ... 40 3.6
10dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 3.6
11gb|AC118620.10| Mus musculus chromosome 3, clone RP24-571H24, co... 40 3.6
12gb|AC004606.1|AC004606 Homo sapiens chromosome 17, clone hRPC.10... 40 3.6
13dbj|AP001251.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 3.6

>gb|AC087518.5| Homo sapiens chromosome , clone RP11-359E19, complete sequence
          Length = 168531

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 85     atttattatttcaaggtccaattat 109
              |||||||||||||||||| ||||||
Sbjct: 159929 atttattatttcaaggtcgaattat 159905



to top

>gb|AC022733.8| Homo sapiens chromosome 8, clone RP11-470M17, complete sequence
          Length = 175202

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 85    atttattatttcaaggtccaattat 109
             |||||||||||||||||| ||||||
Sbjct: 98023 atttattatttcaaggtcgaattat 98047



to top

>ref|XM_759973.1| Theileria parva strain Muguga phosphate transporter (TP02_0500)
            partial mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  ctcctcgtcgatgccgtcat 270
            ||||||||||||||||||||
Sbjct: 1587 ctcctcgtcgatgccgtcat 1568



to top

>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    gcaagataagatcatctttc 231
              ||||||||||||||||||||
Sbjct: 190135 gcaagataagatcatctttc 190116



to top

>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence
          Length = 184396

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 41     ccattactcggtgtaatatgctgaggaa 68
              |||||||| |||||||||||| ||||||
Sbjct: 160443 ccattactgggtgtaatatgcagaggaa 160416



to top

>gb|AC091154.3| Homo sapiens chromosome 17, clone RP11-750B16, complete sequence
          Length = 175783

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     aagtacagaagaagatgcca 43
              ||||||||||||||||||||
Sbjct: 153439 aagtacagaagaagatgcca 153420



to top

>gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, complete sequence
          Length = 196544

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     agtacagaagaagatgccat 44
              ||||||||||||||||||||
Sbjct: 195850 agtacagaagaagatgccat 195869



to top

>gb|AC067961.8| Homo sapiens BAC clone RP11-59F3 from 2, complete sequence
          Length = 105884

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   agtacagaagaagatgccat 44
            ||||||||||||||||||||
Sbjct: 1306 agtacagaagaagatgccat 1325



to top

>dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, map 22, complete
             sequences
          Length = 171187

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    gtgtaatatgctgaggaactacat 74
             |||||| |||||||||||||||||
Sbjct: 50284 gtgtaagatgctgaggaactacat 50307



to top

>dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, section 23/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     gtgtaatatgctgaggaactacat 74
              |||||| |||||||||||||||||
Sbjct: 125058 gtgtaagatgctgaggaactacat 125081



to top

>gb|AC118620.10| Mus musculus chromosome 3, clone RP24-571H24, complete sequence
          Length = 182926

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   ctgtggttttgctttggctg 151
             ||||||||||||||||||||
Sbjct: 31641 ctgtggttttgctttggctg 31660



to top

>gb|AC004606.1|AC004606 Homo sapiens chromosome 17, clone hRPC.1043_H_15, complete sequence
          Length = 99512

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aagtacagaagaagatgcca 43
             ||||||||||||||||||||
Sbjct: 80675 aagtacagaagaagatgcca 80694



to top

>dbj|AP001251.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B5P9, LL56-APP
              region, complete sequence
          Length = 150681

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     gtgtaatatgctgaggaactacat 74
              |||||| |||||||||||||||||
Sbjct: 113281 gtgtaagatgctgaggaactacat 113304


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,639,114
Number of Sequences: 3902068
Number of extensions: 2639114
Number of successful extensions: 51913
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51884
Number of HSP's gapped (non-prelim): 29
length of query: 276
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 254
effective length of database: 17,147,199,772
effective search space: 4355388742088
effective search space used: 4355388742088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top