ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12n04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNAJ_BLOFL (Q7VQL3) Chaperone protein dnaJ 31 1.9
2MATK_CYPCL (Q6J9Z4) Maturase K (Intron maturase) 30 5.6
3ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-) 29 9.6
4ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger prote... 29 9.6

>DNAJ_BLOFL (Q7VQL3) Chaperone protein dnaJ|
          Length = 377

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -3

Query: 262 FLEVMKAAAEMRSTRSSSRLKQEEVWVE--IRQVIHHICCQSMDRVVCVQCPASS*KQKQ 89
           F ++   +   RS R S      E+ +E  ++ V+  IC  ++  V C+QC  S  K   
Sbjct: 99  FGDIFGGSRRSRSRRGSDLRYDIELSLEEAVKGVVREICVPTL--VTCLQCRGSGAKSSA 156

Query: 88  PFQLAVVXHEEGEVKRRR 35
                V  H  G+++ R+
Sbjct: 157 SIVSCVTCHGHGQIQMRQ 174



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>MATK_CYPCL (Q6J9Z4) Maturase K (Intron maturase)|
          Length = 516

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 247 KAAAEMRSTRSSSRLKQEEVWVEIRQVIHHICCQSMDRVVC 125
           K ++ +RST S   L++   +V+I  +I  +CC S  R++C
Sbjct: 239 KQSSYLRSTSSGVFLERTHFYVKIEHLIV-VCCNSFHRILC 278



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>ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-)|
          Length = 458

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 184 PTPPPVLVENYYEC 225
           PTPPP + +NYY C
Sbjct: 360 PTPPPTVCDNYYTC 373



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>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the|
           cerebellum 5)
          Length = 639

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 127 KLLCPWIDNICDESLALFPPTPPP 198
           +L+C WID   DE   L PP PPP
Sbjct: 371 ELICKWIDP--DELAGLPPPPPPP 392


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,096,205
Number of Sequences: 219361
Number of extensions: 1441314
Number of successful extensions: 3960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3956
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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