| Clone Name | bags13c04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507556.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.18 mRNA Length = 1185 Score = 131 bits (66), Expect = 3e-27 Identities = 116/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 96 aatggcgcaagagagttggaaa---gaggcagaggatacgggtgtccacgcacccgaggc 152 |||||| |||||||| |||||| ||||||||||| || || |||||| |||| ||||| Sbjct: 214 aatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggc 273 Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggcaaccggatgacagagaacatgtg 212 ||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct: 274 ccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtg 333 Query: 213 ctcaaagtgtta 224 |||||||||||| Sbjct: 334 ctcaaagtgtta 345 Score = 93.7 bits (47), Expect = 7e-16 Identities = 170/211 (80%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| || ||||| ||| | || |||||||||||||| ||| | || || |||||| Sbjct: 497 aagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaag 556 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || |||||||||| ||||||||| || |||||||| || ||||| | ||| | |||| Sbjct: 557 tgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcaca 616 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaaccccgtcgtcaaggct 561 || || |||||||||| ||| ||||||||||| ||| | ||||| || | || || ||| Sbjct: 617 tttgattacaagcaggtcgggagggagcagattgccaaacagaatcctcttgtgaaagct 676 Query: 562 gacaaggtcaccagattctgatggaggttct 592 |||||| |||||| | |||||||| |||||| Sbjct: 677 gacaagatcaccaaaatctgatggcggttct 707
>ref|XM_469955.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1178 Score = 131 bits (66), Expect = 3e-27 Identities = 116/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 96 aatggcgcaagagagttggaaa---gaggcagaggatacgggtgtccacgcacccgaggc 152 |||||| |||||||| |||||| ||||||||||| || || |||||| |||| ||||| Sbjct: 207 aatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggc 266 Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggcaaccggatgacagagaacatgtg 212 ||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct: 267 ccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtg 326 Query: 213 ctcaaagtgtta 224 |||||||||||| Sbjct: 327 ctcaaagtgtta 338 Score = 93.7 bits (47), Expect = 7e-16 Identities = 170/211 (80%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| || ||||| ||| | || |||||||||||||| ||| | || || |||||| Sbjct: 490 aagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaag 549 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || |||||||||| ||||||||| || |||||||| || ||||| | ||| | |||| Sbjct: 550 tgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcaca 609 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaaccccgtcgtcaaggct 561 || || |||||||||| ||| ||||||||||| ||| | ||||| || | || || ||| Sbjct: 610 tttgattacaagcaggtcgggagggagcagattgccaaacagaatcctcttgtgaaagct 669 Query: 562 gacaaggtcaccagattctgatggaggttct 592 |||||| |||||| | |||||||| |||||| Sbjct: 670 gacaagatcaccaaaatctgatggcggttct 700
>ref|XM_507075.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0060J21.18 mRNA Length = 1204 Score = 131 bits (66), Expect = 3e-27 Identities = 116/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 96 aatggcgcaagagagttggaaa---gaggcagaggatacgggtgtccacgcacccgaggc 152 |||||| |||||||| |||||| ||||||||||| || || |||||| |||| ||||| Sbjct: 233 aatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggc 292 Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggcaaccggatgacagagaacatgtg 212 ||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct: 293 ccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtg 352 Query: 213 ctcaaagtgtta 224 |||||||||||| Sbjct: 353 ctcaaagtgtta 364 Score = 93.7 bits (47), Expect = 7e-16 Identities = 170/211 (80%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| || ||||| ||| | || |||||||||||||| ||| | || || |||||| Sbjct: 516 aagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaag 575 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || |||||||||| ||||||||| || |||||||| || ||||| | ||| | |||| Sbjct: 576 tgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcaca 635 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaaccccgtcgtcaaggct 561 || || |||||||||| ||| ||||||||||| ||| | ||||| || | || || ||| Sbjct: 636 tttgattacaagcaggtcgggagggagcagattgccaaacagaatcctcttgtgaaagct 695 Query: 562 gacaaggtcaccagattctgatggaggttct 592 |||||| |||||| | |||||||| |||||| Sbjct: 696 gacaagatcaccaaaatctgatggcggttct 726
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 131 bits (66), Expect = 3e-27 Identities = 116/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 96 aatggcgcaagagagttggaaa---gaggcagaggatacgggtgtccacgcacccgaggc 152 |||||| |||||||| |||||| ||||||||||| || || |||||| |||| ||||| Sbjct: 72580 aatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggc 72639 Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggcaaccggatgacagagaacatgtg 212 ||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct: 72640 ccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtg 72699 Query: 213 ctcaaagtgtta 224 |||||||||||| Sbjct: 72700 ctcaaagtgtta 72711 Score = 93.7 bits (47), Expect = 7e-16 Identities = 170/211 (80%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| || ||||| ||| | || |||||||||||||| ||| | || || |||||| Sbjct: 72863 aagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaag 72922 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || |||||||||| ||||||||| || |||||||| || ||||| | ||| | |||| Sbjct: 72923 tgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcaca 72982 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaaccccgtcgtcaaggct 561 || || |||||||||| ||| ||||||||||| ||| | ||||| || | || || ||| Sbjct: 72983 tttgattacaagcaggtcgggagggagcagattgccaaacagaatcctcttgtgaaagct 73042 Query: 562 gacaaggtcaccagattctgatggaggttct 592 |||||| |||||| | |||||||| |||||| Sbjct: 73043 gacaagatcaccaaaatctgatggcggttct 73073 Score = 61.9 bits (31), Expect = 3e-06 Identities = 117/143 (81%), Gaps = 2/143 (1%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| |||||||||||||| || ||||| | || |||||| | Sbjct: 65260 cgtgccggaagaaggtggggctgacggggttcaagtgccggtgcggcggcaacttctg-t 65318 Query: 467 cgatg-caccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcagg 525 | | ||||| |||||||||| |||| ||| |||||||||||| ||||| | | Sbjct: 65319 ggcggccaccgccacgccgacgcccacggctgcggcttcgactacaagagcgccgggaag 65378 Query: 526 gagcagatcgcccagcagaaccc 548 |||||||||||| |||||||||| Sbjct: 65379 gagcagatcgccaagcagaaccc 65401 Score = 58.0 bits (29), Expect = 4e-05 Identities = 119/149 (79%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 ||||||||| |||||| ||||| |||||||||||||| || ||||| | ||| |||||| Sbjct: 60344 cgtgccggaggaaggtggggctgacggggttcaagtgccggtgcggcggcacgttctgcg 60403 Query: 467 cgatgcaccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcaggg 526 ||||| |||||||||| ||||| ||| |||||||||||| |||| |||| Sbjct: 60404 gcggccaccgctacgccgacgagcacggctgcggcttcgactacaagagctccgggaggg 60463 Query: 527 agcagatcgcccagcagaaccccgtcgtc 555 ||| ||||||| ||||||| || |||||| Sbjct: 60464 agctgatcgccaagcagaatccggtcgtc 60492
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 131 bits (66), Expect = 3e-27 Identities = 116/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Minus Query: 96 aatggcgcaagagagttggaaa---gaggcagaggatacgggtgtccacgcacccgaggc 152 |||||| |||||||| |||||| ||||||||||| || || |||||| |||| ||||| Sbjct: 32671327 aatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggc 32671268 Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggcaaccggatgacagagaacatgtg 212 ||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct: 32671267 ccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtg 32671208 Query: 213 ctcaaagtgtta 224 |||||||||||| Sbjct: 32671207 ctcaaagtgtta 32671196 Score = 93.7 bits (47), Expect = 7e-16 Identities = 170/211 (80%) Strand = Plus / Minus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| || ||||| ||| | || |||||||||||||| ||| | || || |||||| Sbjct: 32671044 aagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaag 32670985 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || |||||||||| ||||||||| || |||||||| || ||||| | ||| | |||| Sbjct: 32670984 tgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcaca 32670925 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaaccccgtcgtcaaggct 561 || || |||||||||| ||| ||||||||||| ||| | ||||| || | || || ||| Sbjct: 32670924 tttgattacaagcaggtcgggagggagcagattgccaaacagaatcctcttgtgaaagct 32670865 Query: 562 gacaaggtcaccagattctgatggaggttct 592 |||||| |||||| | |||||||| |||||| Sbjct: 32670864 gacaagatcaccaaaatctgatggcggttct 32670834 Score = 61.9 bits (31), Expect = 3e-06 Identities = 117/143 (81%), Gaps = 2/143 (1%) Strand = Plus / Minus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| |||||||||||||| || ||||| | || |||||| | Sbjct: 32678647 cgtgccggaagaaggtggggctgacggggttcaagtgccggtgcggcggcaacttctg-t 32678589 Query: 467 cgatg-caccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcagg 525 | | ||||| |||||||||| |||| ||| |||||||||||| ||||| | | Sbjct: 32678588 ggcggccaccgccacgccgacgcccacggctgcggcttcgactacaagagcgccgggaag 32678529 Query: 526 gagcagatcgcccagcagaaccc 548 |||||||||||| |||||||||| Sbjct: 32678528 gagcagatcgccaagcagaaccc 32678506 Score = 58.0 bits (29), Expect = 4e-05 Identities = 119/149 (79%) Strand = Plus / Minus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 ||||||||| |||||| ||||| |||||||||||||| || ||||| | ||| |||||| Sbjct: 32683563 cgtgccggaggaaggtggggctgacggggttcaagtgccggtgcggcggcacgttctgcg 32683504 Query: 467 cgatgcaccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcaggg 526 ||||| |||||||||| ||||| ||| |||||||||||| |||| |||| Sbjct: 32683503 gcggccaccgctacgccgacgagcacggctgcggcttcgactacaagagctccgggaggg 32683444 Query: 527 agcagatcgcccagcagaaccccgtcgtc 555 ||| ||||||| ||||||| || |||||| Sbjct: 32683443 agctgatcgccaagcagaatccggtcgtc 32683415
>gb|AY377427.1| Oryza sativa (japonica cultivar-group) putative zinc finger transcription factor ZFP38 (ZFP38) mRNA, complete cds Length = 854 Score = 131 bits (66), Expect = 3e-27 Identities = 116/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 96 aatggcgcaagagagttggaaa---gaggcagaggatacgggtgtccacgcacccgaggc 152 |||||| |||||||| |||||| ||||||||||| || || |||||| |||| ||||| Sbjct: 22 aatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggc 81 Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggcaaccggatgacagagaacatgtg 212 ||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct: 82 ccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtg 141 Query: 213 ctcaaagtgtta 224 |||||||||||| Sbjct: 142 ctcaaagtgtta 153 Score = 93.7 bits (47), Expect = 7e-16 Identities = 170/211 (80%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| || ||||| ||| | || |||||||||||||| ||| | || || |||||| Sbjct: 305 aagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaag 364 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || |||||||||| ||||||||| || |||||||| || ||||| | ||| | |||| Sbjct: 365 tgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcaca 424 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaaccccgtcgtcaaggct 561 || || |||||||||| ||| ||||||||||| ||| | ||||| || | || || ||| Sbjct: 425 tttgattacaagcaggtcgggagggagcagattgccaaacagaatcctcttgtgaaagct 484 Query: 562 gacaaggtcaccagattctgatggaggttct 592 |||||| |||||| | |||||||| |||||| Sbjct: 485 gacaagatcaccaaaatctgatggcggttct 515
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 131 bits (66), Expect = 3e-27 Identities = 116/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Minus Query: 96 aatggcgcaagagagttggaaa---gaggcagaggatacgggtgtccacgcacccgaggc 152 |||||| |||||||| |||||| ||||||||||| || || |||||| |||| ||||| Sbjct: 32761837 aatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggc 32761778 Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggcaaccggatgacagagaacatgtg 212 ||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct: 32761777 ccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtg 32761718 Query: 213 ctcaaagtgtta 224 |||||||||||| Sbjct: 32761717 ctcaaagtgtta 32761706 Score = 93.7 bits (47), Expect = 7e-16 Identities = 170/211 (80%) Strand = Plus / Minus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| || ||||| ||| | || |||||||||||||| ||| | || || |||||| Sbjct: 32761554 aagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaag 32761495 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || |||||||||| ||||||||| || |||||||| || ||||| | ||| | |||| Sbjct: 32761494 tgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcaca 32761435 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaaccccgtcgtcaaggct 561 || || |||||||||| ||| ||||||||||| ||| | ||||| || | || || ||| Sbjct: 32761434 tttgattacaagcaggtcgggagggagcagattgccaaacagaatcctcttgtgaaagct 32761375 Query: 562 gacaaggtcaccagattctgatggaggttct 592 |||||| |||||| | |||||||| |||||| Sbjct: 32761374 gacaagatcaccaaaatctgatggcggttct 32761344 Score = 61.9 bits (31), Expect = 3e-06 Identities = 117/143 (81%), Gaps = 2/143 (1%) Strand = Plus / Minus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| |||||||||||||| || ||||| | || |||||| | Sbjct: 32769157 cgtgccggaagaaggtggggctgacggggttcaagtgccggtgcggcggcaacttctg-t 32769099 Query: 467 cgatg-caccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcagg 525 | | ||||| |||||||||| |||| ||| |||||||||||| ||||| | | Sbjct: 32769098 ggcggccaccgccacgccgacgcccacggctgcggcttcgactacaagagcgccgggaag 32769039 Query: 526 gagcagatcgcccagcagaaccc 548 |||||||||||| |||||||||| Sbjct: 32769038 gagcagatcgccaagcagaaccc 32769016 Score = 58.0 bits (29), Expect = 4e-05 Identities = 119/149 (79%) Strand = Plus / Minus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 ||||||||| |||||| ||||| |||||||||||||| || ||||| | ||| |||||| Sbjct: 32774073 cgtgccggaggaaggtggggctgacggggttcaagtgccggtgcggcggcacgttctgcg 32774014 Query: 467 cgatgcaccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcaggg 526 ||||| |||||||||| ||||| ||| |||||||||||| |||| |||| Sbjct: 32774013 gcggccaccgctacgccgacgagcacggctgcggcttcgactacaagagctccgggaggg 32773954 Query: 527 agcagatcgcccagcagaaccccgtcgtc 555 ||| ||||||| ||||||| || |||||| Sbjct: 32773953 agctgatcgccaagcagaatccggtcgtc 32773925
>dbj|AK102503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095D08, full insert sequence Length = 1158 Score = 131 bits (66), Expect = 3e-27 Identities = 116/132 (87%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 96 aatggcgcaagagagttggaaa---gaggcagaggatacgggtgtccacgcacccgaggc 152 |||||| |||||||| |||||| ||||||||||| || || |||||| |||| ||||| Sbjct: 233 aatggcacaagagagctggaaaaaggaggcagaggagactggagtccacacacctgaggc 292 Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggcaaccggatgacagagaacatgtg 212 ||| ||| ||||||| |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct: 293 ccctatattgtgcgttaacaactgtggcttctttggcagccggatgacagaaaacatgtg 352 Query: 213 ctcaaagtgtta 224 |||||||||||| Sbjct: 353 ctcaaagtgtta 364 Score = 85.7 bits (43), Expect = 2e-13 Identities = 169/211 (80%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| || ||||| ||| | || |||||||||||||| ||| | || || |||||| Sbjct: 516 aagccacccagtaaccgttgcttatcatgccggaagaaggttgggttgacaggattcaag 575 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || |||||||||| ||||||||| || |||||||| || ||||| | ||| | |||| Sbjct: 576 tgccgctgcggaggcaccttctgttcaatgcaccgctatgccgattcacacaaatgcaca 635 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaaccccgtcgtcaaggct 561 || || |||||||||| ||| ||||||||||| ||| | ||||| || | || | ||| Sbjct: 636 tttgattacaagcaggtcgggagggagcagattgccaaacagaatcctcttgtgagagct 695 Query: 562 gacaaggtcaccagattctgatggaggttct 592 |||||| |||||| | |||||||| |||||| Sbjct: 696 gacaagatcaccaaaatctgatggcggttct 726
>ref|XM_476740.1| Oryza sativa (japonica cultivar-group), mRNA Length = 486 Score = 87.7 bits (44), Expect = 4e-14 Identities = 134/164 (81%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| |||||||| |||||||| ||||| |||||||| || || || || ||| || Sbjct: 286 aagccacccagcaaccgatgcctgtcatgccgtaagaaggttggtctgactggcttccag 345 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || || ||||||| ||||||||||| | ||||| || |||| || ||||| |||| Sbjct: 346 tgccgatgcggaggtaccttctgctcaacacaccgttataccgaagctcacgactgcacc 405 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaa 545 |||||||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 406 ttcgactacaagaaggccggccgggatcagattgccaagcagaa 449
>gb|AY282740.1| Oryza sativa (japonica cultivar-group) putative zinc finger transcription factor ZFP33 mRNA, complete cds Length = 727 Score = 87.7 bits (44), Expect = 4e-14 Identities = 134/164 (81%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| |||||||| |||||||| ||||| |||||||| || || || || ||| || Sbjct: 291 aagccacccagcaaccgatgcctgtcatgccgtaagaaggttggtctgactggcttccag 350 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || || ||||||| ||||||||||| | ||||| || |||| || ||||| |||| Sbjct: 351 tgccgatgcggaggtaccttctgctcaacacaccgttataccgaagctcacgactgcacc 410 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaa 545 |||||||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 411 ttcgactacaagaaggccggccgggatcagattgccaagcagaa 454
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 4e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| |||||||| |||||||| ||||| |||||||| || || || || ||| || Sbjct: 3708579 aagccacccagcaaccgatgcctgtcatgccgtaagaaggttggtctgactggcttccag 3708520 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || || ||||||| ||||||||||| | ||||| || |||| || ||||| |||| Sbjct: 3708519 tgccgatgcggaggtaccttctgctcaacacaccgttataccgaagctcacgactgcacc 3708460 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaa 545 |||||||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 3708459 ttcgactacaagaaggccggccgggatcagattgccaagcagaa 3708416 Score = 40.1 bits (20), Expect = 9.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 479 acgccgacgcgcacgattgcaagttcgactacaagcaggccggc 522 |||||| |||||||| |||| ||||||||||||| ||||||| Sbjct: 3717443 acgccggcgcgcacgcttgctcgttcgactacaaggcggccggc 3717400
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 87.7 bits (44), Expect = 4e-14 Identities = 134/164 (81%) Strand = Plus / Minus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| |||||||| |||||||| ||||| |||||||| || || || || ||| || Sbjct: 52930 aagccacccagcaaccgatgcctgtcatgccgtaagaaggttggtctgactggcttccag 52871 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || || ||||||| ||||||||||| | ||||| || |||| || ||||| |||| Sbjct: 52870 tgccgatgcggaggtaccttctgctcaacacaccgttataccgaagctcacgactgcacc 52811 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaa 545 |||||||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 52810 ttcgactacaagaaggccggccgggatcagattgccaagcagaa 52767 Score = 40.1 bits (20), Expect = 9.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 479 acgccgacgcgcacgattgcaagttcgactacaagcaggccggc 522 |||||| |||||||| |||| ||||||||||||| ||||||| Sbjct: 61794 acgccggcgcgcacgcttgctcgttcgactacaaggcggccggc 61751
>dbj|AK121813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098F24, full insert sequence Length = 887 Score = 87.7 bits (44), Expect = 4e-14 Identities = 134/164 (81%) Strand = Plus / Plus Query: 382 aagccaccgagcaaccgctgcctgtcgtgccggaagaaggtcgggctaacggggttcaag 441 |||||||| |||||||| |||||||| ||||| |||||||| || || || || ||| || Sbjct: 442 aagccacccagcaaccgatgcctgtcatgccgtaagaaggttggtctgactggcttccag 501 Query: 442 tgtcgctgcggagacaccttctgctcgatgcaccggtacgccgacgcgcacgattgcaag 501 || || ||||||| ||||||||||| | ||||| || |||| || ||||| |||| Sbjct: 502 tgccgatgcggaggtaccttctgctcaacacaccgttataccgaagctcacgactgcacc 561 Query: 502 ttcgactacaagcaggccggcagggagcagatcgcccagcagaa 545 |||||||||||| |||||||| |||| ||||| ||| ||||||| Sbjct: 562 ttcgactacaagaaggccggccgggatcagattgccaagcagaa 605
>dbj|AK108384.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E10, full insert sequence Length = 1075 Score = 65.9 bits (33), Expect = 2e-07 Identities = 120/149 (80%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 ||||||||| |||||| ||||| |||||||||||||| || ||||| | ||| |||||| Sbjct: 632 cgtgccggaggaaggtggggctgacggggttcaagtgccggtgcggcggcacgttctgcg 691 Query: 467 cgatgcaccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcaggg 526 ||||| |||||||||| |||||| ||| |||||||||||| |||| |||| Sbjct: 692 gcggccaccgctacgccgacgagcacgactgcggcttcgactacaagagctccgggaggg 751 Query: 527 agcagatcgcccagcagaaccccgtcgtc 555 ||| ||||||| ||||||| || |||||| Sbjct: 752 agctgatcgccaagcagaatccggtcgtc 780
>ref|XM_469956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 766 Score = 61.9 bits (31), Expect = 3e-06 Identities = 117/143 (81%), Gaps = 2/143 (1%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| |||||||||||||| || ||||| | || |||||| | Sbjct: 399 cgtgccggaagaaggtggggctgacggggttcaagtgccggtgcggcggcaacttctg-t 457 Query: 467 cgatg-caccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcagg 525 | | ||||| |||||||||| |||| ||| |||||||||||| ||||| | | Sbjct: 458 ggcggccaccgccacgccgacgcccacggctgcggcttcgactacaagagcgccgggaag 517 Query: 526 gagcagatcgcccagcagaaccc 548 |||||||||||| |||||||||| Sbjct: 518 gagcagatcgccaagcagaaccc 540
>gb|AY526867.1| Oryza sativa (japonica cultivar-group) putative zinc finger transcription factor (ZFP48) mRNA, complete cds Length = 614 Score = 61.9 bits (31), Expect = 3e-06 Identities = 117/143 (81%), Gaps = 2/143 (1%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| |||||||||||||| || ||||| | || |||||| | Sbjct: 399 cgtgccggaagaaggtggggctgacggggttcaagtgccggtgcggcggcaacttctg-t 457 Query: 467 cgatg-caccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcagg 525 | | ||||| |||||||||| |||| ||| |||||||||||| ||||| | | Sbjct: 458 ggcggccaccgccacgccgacgcccacggctgcggcttcgactacaagagcgccgggaag 517 Query: 526 gagcagatcgcccagcagaaccc 548 |||||||||||| |||||||||| Sbjct: 518 gagcagatcgccaagcagaaccc 540
>dbj|AK108205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D04, full insert sequence Length = 766 Score = 61.9 bits (31), Expect = 3e-06 Identities = 117/143 (81%), Gaps = 2/143 (1%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| |||||||||||||| || ||||| | || |||||| | Sbjct: 399 cgtgccggaagaaggtggggctgacggggttcaagtgccggtgcggcggcaacttctg-t 457 Query: 467 cgatg-caccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcagg 525 | | ||||| |||||||||| |||| ||| |||||||||||| ||||| | | Sbjct: 458 ggcggccaccgccacgccgacgcccacggctgcggcttcgactacaagagcgccgggaag 517 Query: 526 gagcagatcgcccagcagaaccc 548 |||||||||||| |||||||||| Sbjct: 518 gagcagatcgccaagcagaaccc 540
>ref|XM_469958.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1075 Score = 58.0 bits (29), Expect = 4e-05 Identities = 119/149 (79%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 ||||||||| |||||| ||||| |||||||||||||| || ||||| | ||| |||||| Sbjct: 632 cgtgccggaggaaggtggggctgacggggttcaagtgccggtgcggcggcacgttctgcg 691 Query: 467 cgatgcaccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcaggg 526 ||||| |||||||||| ||||| ||| |||||||||||| |||| |||| Sbjct: 692 gcggccaccgctacgccgacgagcacggctgcggcttcgactacaagagctccgggaggg 751 Query: 527 agcagatcgcccagcagaaccccgtcgtc 555 ||| ||||||| ||||||| || |||||| Sbjct: 752 agctgatcgccaagcagaatccggtcgtc 780
>ref|XM_482578.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 52.0 bits (26), Expect = 0.002 Identities = 113/142 (79%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| ||| ||| |||| || ||||| | ||| ||||||| Sbjct: 500 cgtgccggaagaaggtggggctgctgggcttcgagtgccgatgcggcggcacgttctgct 559 Query: 467 cgatgcaccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcaggg 526 ||| |||||| |||||||| ||||| |||| ||||||| |||| || || | ||| Sbjct: 560 cgacgcaccgccacgccgacaagcacgcctgcaccttcgacttcaagaagagcgaccggg 619 Query: 527 agcagatcgcccagcagaaccc 548 || |||||||| || ||||||| Sbjct: 620 agaagatcgccaaggagaaccc 641
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 113/142 (79%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| ||| ||| |||| || ||||| | ||| ||||||| Sbjct: 21198746 cgtgccggaagaaggtggggctgctgggcttcgagtgccgatgcggcggcacgttctgct 21198805 Query: 467 cgatgcaccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcaggg 526 ||| |||||| |||||||| ||||| |||| ||||||| |||| || || | ||| Sbjct: 21198806 cgacgcaccgccacgccgacaagcacgcctgcaccttcgacttcaagaagagcgaccggg 21198865 Query: 527 agcagatcgcccagcagaaccc 548 || |||||||| || ||||||| Sbjct: 21198866 agaagatcgccaaggagaaccc 21198887
>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11 Length = 170723 Score = 52.0 bits (26), Expect = 0.002 Identities = 113/142 (79%) Strand = Plus / Plus Query: 407 cgtgccggaagaaggtcgggctaacggggttcaagtgtcgctgcggagacaccttctgct 466 |||||||||||||||| ||||| ||| ||| |||| || ||||| | ||| ||||||| Sbjct: 25023 cgtgccggaagaaggtggggctgctgggcttcgagtgccgatgcggcggcacgttctgct 25082 Query: 467 cgatgcaccggtacgccgacgcgcacgattgcaagttcgactacaagcaggccggcaggg 526 ||| |||||| |||||||| ||||| |||| ||||||| |||| || || | ||| Sbjct: 25083 cgacgcaccgccacgccgacaagcacgcctgcaccttcgacttcaagaagagcgaccggg 25142 Query: 527 agcagatcgcccagcagaaccc 548 || |||||||| || ||||||| Sbjct: 25143 agaagatcgccaaggagaaccc 25164
>gb|BT017601.1| Zea mays clone EL01N0431H03.c mRNA sequence Length = 941 Score = 46.1 bits (23), Expect = 0.15 Identities = 35/39 (89%) Strand = Plus / Plus Query: 472 caccggtacgccgacgcgcacgattgcaagttcgactac 510 ||||||||| ||||| |||||| ||||||||||||||| Sbjct: 527 caccggtactccgacaagcacgactgcaagttcgactac 565
>ref|XM_466086.1| Oryza sativa (japonica cultivar-group), mRNA Length = 743 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 ctgtgcgtcaacaactgcggcttctt 185 ||||||| |||||||||||||||||| Sbjct: 163 ctgtgcgccaacaactgcggcttctt 188
>ref|XM_506746.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1225_F07.15 mRNA Length = 1000 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Plus Query: 145 cccgaggccccgatactgtgcgtcaacaactgcggcttctttggca 190 ||||||| ||| || || ||| |||| ||||||||||||||||||| Sbjct: 191 cccgagggcccaatcctttgcatcaataactgcggcttctttggca 236
>ref|XM_464458.1| Oryza sativa (japonica cultivar-group), mRNA Length = 991 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Plus Query: 145 cccgaggccccgatactgtgcgtcaacaactgcggcttctttggca 190 ||||||| ||| || || ||| |||| ||||||||||||||||||| Sbjct: 174 cccgagggcccaatcctttgcatcaataactgcggcttctttggca 219
>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3 (SAP-3) mRNA, complete cds Length = 1132 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 99 cccgatcctttgcatcaataactgcggcttctttggca 136
>dbj|AK061911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A06, full insert sequence Length = 991 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Plus Query: 145 cccgaggccccgatactgtgcgtcaacaactgcggcttctttggca 190 ||||||| ||| || || ||| |||| ||||||||||||||||||| Sbjct: 174 cccgagggcccaatcctttgcatcaataactgcggcttctttggca 219
>gb|DQ083230.1| Oryza sativa (indica cultivar-group) clone 3B12G81 mRNA sequence Length = 449 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 94 cccgatcctttgcatcaataactgcggcttctttggca 131
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 24109444 cccgatcctttgcatcaataactgcggcttctttggca 24109481
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 ctgtgcgtcaacaactgcggcttctt 185 ||||||| |||||||||||||||||| Sbjct: 19507744 ctgtgcgccaacaactgcggcttctt 19507769 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 145 cccgaggccccgatactgtgcgtcaacaactgcggcttctttggca 190 ||||||| ||| || || ||| |||| ||||||||||||||||||| Sbjct: 5346527 cccgagggcccaatcctttgcatcaataactgcggcttctttggca 5346482
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 ctgtgcgtcaacaactgcggcttctt 185 ||||||| |||||||||||||||||| Sbjct: 125271 ctgtgcgccaacaactgcggcttctt 125296
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1524_D08 Length = 143046 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 145 cccgaggccccgatactgtgcgtcaacaactgcggcttctttggca 190 ||||||| ||| || || ||| |||| ||||||||||||||||||| Sbjct: 108 cccgagggcccaatcctttgcatcaataactgcggcttctttggca 63
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 42902 cccgatcctttgcatcaataactgcggcttctttggca 42939
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 119137 cccgatcctttgcatcaataactgcggcttctttggca 119174
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 145 cccgaggccccgatactgtgcgtcaacaactgcggcttctttggca 190 ||||||| ||| || || ||| |||| ||||||||||||||||||| Sbjct: 72830 cccgagggcccaatcctttgcatcaataactgcggcttctttggca 72785
>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full insert sequence Length = 999 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 188 cccgatcctttgcatcaataactgcggcttctttggca 225
>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full insert sequence Length = 1009 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 188 cccgatcctttgcatcaataactgcggcttctttggca 225
>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full insert sequence Length = 1000 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 189 cccgatcctttgcatcaataactgcggcttctttggca 226
>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full insert sequence Length = 1209 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 186 cccgatcctttgcatcaataactgcggcttctttggca 223
>dbj|AK067403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E09, full insert sequence Length = 1000 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Plus Query: 145 cccgaggccccgatactgtgcgtcaacaactgcggcttctttggca 190 ||||||| ||| || || ||| |||| ||||||||||||||||||| Sbjct: 191 cccgagggcccaatcctttgcatcaataactgcggcttctttggca 236
>dbj|AK063708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-B07, full insert sequence Length = 743 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 ctgtgcgtcaacaactgcggcttctt 185 ||||||| |||||||||||||||||| Sbjct: 163 ctgtgcgccaacaactgcggcttctt 188
>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full insert sequence Length = 1021 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 153 cccgatactgtgcgtcaacaactgcggcttctttggca 190 |||||| || ||| |||| ||||||||||||||||||| Sbjct: 185 cccgatcctttgcatcaataactgcggcttctttggca 222
>ref|NM_124872.2| Arabidopsis thaliana ATRBP45A; RNA binding AT5G54900 (ATRBP45A) mRNA, complete cds Length = 1413 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacccaca 303 ||||||||||||||||||| ||| ||||| Sbjct: 119 ctgctgctgctgttgcatcatcatccaca 91
>gb|AC016158.4| Drosophila melanogaster clone BACR38H07, complete sequence Length = 172841 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacc 299 ||||||||||||||||||| ||||| Sbjct: 26933 ctgctgctgctgttgcatcatcacc 26909
>emb|AL356421.10| Human DNA sequence from clone RP11-550C4 on chromosome 6 Contains the 3' end of the CD2AP gene for CD2-associated protein, the GPR111 gene for G protein-coupled receptor 111, the GPR115 gene for G protein-coupled receptor 115, the 5' end of a gene for novel protein similar to seven transmembrane receptor (Rhodopsin family), a novel gene and a ribosomal protein 27A (RPL27A) pseudogene, complete sequence Length = 170532 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 tgacagagaacatgtgctcaa 217 ||||||||||||||||||||| Sbjct: 104077 tgacagagaacatgtgctcaa 104097
>emb|AJ252268.1|DME252268 Drosophila melanogaster mRNA for capicua (cic gene) Length = 5175 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacc 299 ||||||||||||||||||| ||||| Sbjct: 1164 ctgctgctgctgttgcatcatcacc 1140
>ref|NM_080253.2| Drosophila melanogaster capicua CG5067-RA (cic), mRNA Length = 5143 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacc 299 ||||||||||||||||||| ||||| Sbjct: 1164 ctgctgctgctgttgcatcatcacc 1140
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 612 tttatattcctcaatggtgat 632 ||||||||||||||||||||| Sbjct: 4827287 tttatattcctcaatggtgat 4827307
>gb|AF324983.2|AF324983 Arabidopsis thaliana AT5g54900 (AT5g54900/MBG8_17) mRNA, complete cds Length = 1395 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacccaca 303 ||||||||||||||||||| ||| ||||| Sbjct: 119 ctgctgctgctgttgcatcatcatccaca 91
>gb|AC008364.5|AC008364 Drosophila melanogaster, chromosome 3R, region 92D-92D, BAC clone BACR09G02, complete sequence Length = 166642 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacc 299 ||||||||||||||||||| ||||| Sbjct: 154710 ctgctgctgctgttgcatcatcacc 154686
>ref|NM_204317.1| Gallus gallus activin A receptor, type IIB (ACVR2B), mRNA Length = 1903 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 aaggccaagaggatggccact 258 ||||||||||||||||||||| Sbjct: 734 aaggccaagaggatggccact 714
>gb|BT024235.1| Drosophila melanogaster LD05430 full insert cDNA Length = 5175 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacc 299 ||||||||||||||||||| ||||| Sbjct: 1165 ctgctgctgctgttgcatcatcacc 1141
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 468 gatgcaccggtacgccgacgcgcac 492 ||||||||||||||||| ||||||| Sbjct: 509644 gatgcaccggtacgccggcgcgcac 509668
>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8 Length = 80315 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacccaca 303 ||||||||||||||||||| ||| ||||| Sbjct: 54504 ctgctgctgctgttgcatcatcatccaca 54476
>gb|AE003729.3| Drosophila melanogaster chromosome 3R, section 67 of 118 of the complete sequence Length = 232477 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcgtcacc 299 ||||||||||||||||||| ||||| Sbjct: 224662 ctgctgctgctgttgcatcatcacc 224638
>gb|U31223.1|GGU31223 Gallus gallus activin receptor IIB mRNA, complete cds Length = 1903 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 aaggccaagaggatggccact 258 ||||||||||||||||||||| Sbjct: 734 aaggccaagaggatggccact 714
>ref|NM_115329.2| Arabidopsis thaliana AMP1 (ALTERED MERISTEM PROGRAM 1); dipeptidase AT3G54720 (AMP1) mRNA, complete cds Length = 2278 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ctgcggcttctttggcaacc 193 |||||||||||||||||||| Sbjct: 1834 ctgcggcttctttggcaacc 1815
>gb|AC166050.3| Mus musculus BAC clone RP24-138A17 from chromosome 9, complete sequence Length = 142457 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 caatggtgatgatgatgctt 642 |||||||||||||||||||| Sbjct: 57560 caatggtgatgatgatgctt 57541
>ref|XM_476742.1| Oryza sativa (japonica cultivar-group), mRNA Length = 465 Score = 40.1 bits (20), Expect = 9.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 479 acgccgacgcgcacgattgcaagttcgactacaagcaggccggc 522 |||||| |||||||| |||| ||||||||||||| ||||||| Sbjct: 362 acgccggcgcgcacgcttgctcgttcgactacaaggcggccggc 405
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 agtagccgaggaggaggcgc 379 |||||||||||||||||||| Sbjct: 2885417 agtagccgaggaggaggcgc 2885398
>gb|AC146485.2| Xenopus tropicalis clone CH216-8M11, complete sequence Length = 191742 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gagagttggaaagaggcaga 125 |||||||||||||||||||| Sbjct: 144633 gagagttggaaagaggcaga 144652
>ref|XM_754214.1| Ustilago maydis 521 hypothetical protein (UM03160.1) partial mRNA Length = 1560 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gccaaggccaagaggatggc 254 |||||||||||||||||||| Sbjct: 80 gccaaggccaagaggatggc 99
>emb|CR700545.3|CNS0G3HP Tetraodon nigroviridis full-length cDNA Length = 1032 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 580 tgatggaggttctgctgaaggagc 603 ||||| |||||||||||||||||| Sbjct: 566 tgatgcaggttctgctgaaggagc 543
>emb|CR698968.3|CNS0G29W Tetraodon nigroviridis full-length cDNA Length = 1037 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 580 tgatggaggttctgctgaaggagc 603 ||||| |||||||||||||||||| Sbjct: 571 tgatgcaggttctgctgaaggagc 548
>emb|CR696630.3|CNS0G0GY Tetraodon nigroviridis full-length cDNA Length = 1050 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 580 tgatggaggttctgctgaaggagc 603 ||||| |||||||||||||||||| Sbjct: 583 tgatgcaggttctgctgaaggagc 560
>emb|Z72521.1|HSN29F4 Human DNA sequence from clone LL22NC03-29F4 on chromosome 22, complete sequence Length = 19912 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ctagaaatggcgcaagagag 110 |||||||||||||||||||| Sbjct: 16810 ctagaaatggcgcaagagag 16829
>emb|AL772197.12| Human DNA sequence from clone RP11-24O6 on chromosome X Contains the 5' end of the SH3KBP1 gene for SH3-domain kinase binding protein 1 (CIN85), two novel genes and one CpG island, complete sequence Length = 106342 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 18160 ctgctgctgctgttgcatcg 18179
>emb|AL731765.5| Human DNA sequence from clone RP11-268L7 on chromosome X, complete sequence Length = 64790 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gagaacatgtgctcaaagtg 221 |||||||||||||||||||| Sbjct: 54166 gagaacatgtgctcaaagtg 54147
>emb|AL353741.16| Human DNA sequence from clone RP11-575C20 on chromosome 9 Contains a general transcription factor IIIA (GTF3A) pseudogene, a novel gene (DVS27) and a CpG island, complete sequence Length = 199517 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 gagaacatgtgctcaaagtg 221 |||||||||||||||||||| Sbjct: 168162 gagaacatgtgctcaaagtg 168181
>emb|AL137009.8| Human DNA sequence from clone RP3-370O5 on chromosome 6 Contains the 5' end of a novel gene containing FLJ13942 and a CpG island, complete sequence Length = 113254 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gagaacatgtgctcaaagtg 221 |||||||||||||||||||| Sbjct: 84725 gagaacatgtgctcaaagtg 84706
>ref|XM_786287.1| PREDICTED: Strongylocentrotus purpuratus similar to Coiled-coil domain containing protein 11 (LOC586508), mRNA Length = 2384 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 caaggccaagaggatggcca 256 |||||||||||||||||||| Sbjct: 669 caaggccaagaggatggcca 688
>gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192046 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 gagaacatgtgctcaaagtg 221 |||||||||||||||||||| Sbjct: 89936 gagaacatgtgctcaaagtg 89955
>emb|AL138650.1|ATT5N23 Arabidopsis thaliana DNA chromosome 3, BAC clone T5N23 Length = 90335 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ctgcggcttctttggcaacc 193 |||||||||||||||||||| Sbjct: 29159 ctgcggcttctttggcaacc 29178
>emb|AJ252124.1|DME252124 Drosophila melanogaster mRNA for SoxNeuro (SoxN gene) Length = 2901 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 2309 ctgctgctgctgttgcatcg 2290
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 aagcaggccggcagggagcagatc 534 ||||||||||||||||||| |||| Sbjct: 4431396 aagcaggccggcagggagctgatc 4431373
>ref|NM_079996.2| Drosophila melanogaster SoxNeuro CG18024-RA (SoxN), mRNA Length = 4046 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 2450 ctgctgctgctgttgcatcg 2431
>ref|NM_031892.1| Homo sapiens SH3-domain kinase binding protein 1 (SH3KBP1), transcript variant 1, mRNA Length = 3348 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 76 ctgctgctgctgttgcatcg 57
>gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chromosome unknown, complete sequence Length = 202104 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctagaaatggcgcaagagag 110 |||||||||||||||||||| Sbjct: 93723 ctagaaatggcgcaagagag 93704
>gb|AF357217.1|AF357217 Arabidopsis thaliana glutamate carboxypeptidase (AMP1) mRNA, complete cds Length = 2277 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ctgcggcttctttggcaacc 193 |||||||||||||||||||| Sbjct: 1813 ctgcggcttctttggcaacc 1794
>gb|AC093045.1| Drosophila melanogaster, chromosome 2L, region 29E-29E, BAC clone BACR01O16, complete sequence Length = 189904 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 68850 ctgctgctgctgttgcatcg 68831
>gb|AC139933.2| Homo sapiens 3 BAC RP11-408F14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 68488 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 gagaacatgtgctcaaagtg 221 |||||||||||||||||||| Sbjct: 5611 gagaacatgtgctcaaagtg 5630
>gb|AY088945.1| Arabidopsis thaliana clone 103193 mRNA, complete sequence Length = 2271 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ctgcggcttctttggcaacc 193 |||||||||||||||||||| Sbjct: 1830 ctgcggcttctttggcaacc 1811
>gb|AC068205.25| Homo sapiens chromosome 11, clone RP11-472I20, complete sequence Length = 205069 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 caaaactgctgctgctgttg 289 |||||||||||||||||||| Sbjct: 61774 caaaactgctgctgctgttg 61793
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 ggagcagatcgcccagcaga 544 |||||||||||||||||||| Sbjct: 146839 ggagcagatcgcccagcaga 146858
>gb|AF230904.1|AF230904 Homo sapiens c-Cbl-interacting protein (CIN85) mRNA, complete cds Length = 3348 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 76 ctgctgctgctgttgcatcg 57
>gb|AE003622.4| Drosophila melanogaster chromosome 2L, section 31 of 83 of the complete sequence Length = 262557 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 158445 ctgctgctgctgttgcatcg 158426
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 aagcaggccggcagggagcagatc 534 ||||||||||||||||||| |||| Sbjct: 4433922 aagcaggccggcagggagctgatc 4433899
>gb|AC005416.1|AC005416 Drosophila melanogaster DNA sequence (P1 DS00901 (D289)), complete sequence Length = 57336 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 38934 ctgctgctgctgttgcatcg 38953
>gb|BT001514.1| Drosophila melanogaster LD44245 full insert cDNA Length = 3207 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ctgctgctgctgttgcatcg 294 |||||||||||||||||||| Sbjct: 1593 ctgctgctgctgttgcatcg 1574
>gb|AC004242.1|AC004242 Homo sapiens 12q13 PAC RPCI1-316M24 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 104913 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gagaacatgtgctcaaagtg 221 |||||||||||||||||||| Sbjct: 63366 gagaacatgtgctcaaagtg 63347
>gb|U08816.1|MMU08816 Mus musculus Ig alpha gene, intron 5 Length = 1890 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ctcagccaaagaaggcaagc 358 |||||||||||||||||||| Sbjct: 372 ctcagccaaagaaggcaagc 391
>emb|CT025678.6| Mouse DNA sequence from clone RP24-153A6 on chromosome 9, complete sequence Length = 175790 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 caatggtgatgatgatgctt 642 |||||||||||||||||||| Sbjct: 50631 caatggtgatgatgatgctt 50612
>emb|AL844189.5| Mouse DNA sequence from clone RP23-167P8 on chromosome X, complete sequence Length = 38266 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 caaaactgctgctgctgttg 289 |||||||||||||||||||| Sbjct: 11226 caaaactgctgctgctgttg 11245
>emb|AL806531.12| Mouse DNA sequence from clone RP23-188K22 on chromosome X, complete sequence Length = 70515 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 651 aggtttacttcagaattgtg 670 |||||||||||||||||||| Sbjct: 26489 aggtttacttcagaattgtg 26470
>emb|AL583887.9| Mouse DNA sequence from clone RP23-121M7 on chromosome 15, complete sequence Length = 220050 Score = 40.1 bits (20), Expect = 9.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 317 agatgaaggatgaag-catctggctcag 343 ||||||||||||||| |||||||||||| Sbjct: 215252 agatgaaggatgaagacatctggctcag 215279 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,506,919 Number of Sequences: 3902068 Number of extensions: 5506919 Number of successful extensions: 144614 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 143736 Number of HSP's gapped (non-prelim): 871 length of query: 681 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 658 effective length of database: 17,143,297,704 effective search space: 11280289889232 effective search space used: 11280289889232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)