| Clone Name | bags12n02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477102.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1570 Score = 297 bits (150), Expect = 1e-77 Identities = 295/342 (86%), Gaps = 1/342 (0%) Strand = Plus / Plus Query: 1 ggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgnattg 60 ||||||||| |||||||||||||| ||||||| ||||||| ||||| || ||| |||| Sbjct: 474 ggttattgatcacattaattatgctgccactgatgctgaaggtgatcatactttg-attg 532 Query: 61 ctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgaggctcctg 120 |||| ||||| || || ||||||||||||||| ||||||| || || |||||||| |||| Sbjct: 533 ctggtgatgacctcatccagtcagatgtgatactggggtcaaagaaaattgaggcccctg 592 Query: 121 tattgtttcgagggattggacatgcggccaatccatccaacagcttggttttgaaggttc 180 |||| ||||| || ||||||||||||| |||||||| ||||||||||| |||| || Sbjct: 593 tattatttcggggaattggacatgcggttaatccatctaacagcttggtcctgaaagtct 652 Query: 181 tatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttccat 240 |||| ||||| ||||| || || |||||||||||| | |||||||||| ||| ||||| Sbjct: 653 tatccgcctctccgtcagcatactcagcaaacccaaagtctaagttggcttcccctccat 712 Query: 241 ctctcacagggtcggccatatcactggtttctgttatgcaggctaggaacaatgctcgtg 300 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| | Sbjct: 713 ctctcacagggtcggctatatcactggtttctgttatgcaggcaagaaacaatgctcggg 772 Query: 301 tgttgatatctggatcactggatttgtttagcaacaggttcc 342 | ||||||||||||||||| ||| |||||||||||||||||| Sbjct: 773 tcttgatatctggatcactcgatctgtttagcaacaggttcc 814
>ref|XM_506221.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_A05.4 mRNA Length = 1648 Score = 297 bits (150), Expect = 1e-77 Identities = 295/342 (86%), Gaps = 1/342 (0%) Strand = Plus / Plus Query: 1 ggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgnattg 60 ||||||||| |||||||||||||| ||||||| ||||||| ||||| || ||| |||| Sbjct: 481 ggttattgatcacattaattatgctgccactgatgctgaaggtgatcatactttg-attg 539 Query: 61 ctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgaggctcctg 120 |||| ||||| || || ||||||||||||||| ||||||| || || |||||||| |||| Sbjct: 540 ctggtgatgacctcatccagtcagatgtgatactggggtcaaagaaaattgaggcccctg 599 Query: 121 tattgtttcgagggattggacatgcggccaatccatccaacagcttggttttgaaggttc 180 |||| ||||| || ||||||||||||| |||||||| ||||||||||| |||| || Sbjct: 600 tattatttcggggaattggacatgcggttaatccatctaacagcttggtcctgaaagtct 659 Query: 181 tatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttccat 240 |||| ||||| ||||| || || |||||||||||| | |||||||||| ||| ||||| Sbjct: 660 tatccgcctctccgtcagcatactcagcaaacccaaagtctaagttggcttcccctccat 719 Query: 241 ctctcacagggtcggccatatcactggtttctgttatgcaggctaggaacaatgctcgtg 300 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| | Sbjct: 720 ctctcacagggtcggctatatcactggtttctgttatgcaggcaagaaacaatgctcggg 779 Query: 301 tgttgatatctggatcactggatttgtttagcaacaggttcc 342 | ||||||||||||||||| ||| |||||||||||||||||| Sbjct: 780 tcttgatatctggatcactcgatctgtttagcaacaggttcc 821
>dbj|AK099319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003F07, full insert sequence Length = 1570 Score = 297 bits (150), Expect = 1e-77 Identities = 295/342 (86%), Gaps = 1/342 (0%) Strand = Plus / Plus Query: 1 ggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgnattg 60 ||||||||| |||||||||||||| ||||||| ||||||| ||||| || ||| |||| Sbjct: 474 ggttattgatcacattaattatgctgccactgatgctgaaggtgatcatactttg-attg 532 Query: 61 ctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgaggctcctg 120 |||| ||||| || || ||||||||||||||| ||||||| || || |||||||| |||| Sbjct: 533 ctggtgatgacctcatccagtcagatgtgatactggggtcaaagaaaattgaggcccctg 592 Query: 121 tattgtttcgagggattggacatgcggccaatccatccaacagcttggttttgaaggttc 180 |||| ||||| || ||||||||||||| |||||||| ||||||||||| |||| || Sbjct: 593 tattatttcggggaattggacatgcggttaatccatctaacagcttggtcctgaaagtct 652 Query: 181 tatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttccat 240 |||| ||||| ||||| || || |||||||||||| | |||||||||| ||| ||||| Sbjct: 653 tatccgcctctccgtcagcatactcagcaaacccaaagtctaagttggcttcccctccat 712 Query: 241 ctctcacagggtcggccatatcactggtttctgttatgcaggctaggaacaatgctcgtg 300 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| | Sbjct: 713 ctctcacagggtcggctatatcactggtttctgttatgcaggcaagaaacaatgctcggg 772 Query: 301 tgttgatatctggatcactggatttgtttagcaacaggttcc 342 | ||||||||||||||||| ||| |||||||||||||||||| Sbjct: 773 tcttgatatctggatcactcgatctgtttagcaacaggttcc 814
>dbj|AK059111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E02, full insert sequence Length = 1648 Score = 297 bits (150), Expect = 1e-77 Identities = 295/342 (86%), Gaps = 1/342 (0%) Strand = Plus / Plus Query: 1 ggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgnattg 60 ||||||||| |||||||||||||| ||||||| ||||||| ||||| || ||| |||| Sbjct: 481 ggttattgatcacattaattatgctgccactgatgctgaaggtgatcatactttg-attg 539 Query: 61 ctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgaggctcctg 120 |||| ||||| || || ||||||||||||||| ||||||| || || |||||||| |||| Sbjct: 540 ctggtgatgacctcatccagtcagatgtgatactggggtcaaagaaaattgaggcccctg 599 Query: 121 tattgtttcgagggattggacatgcggccaatccatccaacagcttggttttgaaggttc 180 |||| ||||| || ||||||||||||| |||||||| ||||||||||| |||| || Sbjct: 600 tattatttcggggtattggacatgcggttaatccatctaacagcttggtcctgaaagtct 659 Query: 181 tatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttccat 240 |||| ||||| ||||| || || |||||||||||| | |||||||||| ||| ||||| Sbjct: 660 tatccgcctctccgtcagcatactcagcaaacccaaagtctaagttggcttcccctccat 719 Query: 241 ctctcacagggtcggccatatcactggtttctgttatgcaggctaggaacaatgctcgtg 300 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| | Sbjct: 720 ctctcacagggtcggctatatcactggtttctgttatgcaggcaagaaacaatgctcggg 779 Query: 301 tgttgatatctggatcactggatttgtttagcaacaggttcc 342 | ||||||||||||||||| ||| |||||||||||||||||| Sbjct: 780 tcttgatatctggatcactcgatctgtttagcaacaggttcc 821
>gb|AY103792.1| Zea mays PCO149739 mRNA sequence Length = 2093 Score = 218 bits (110), Expect = 9e-54 Identities = 258/306 (84%), Gaps = 1/306 (0%) Strand = Plus / Plus Query: 37 tgaaggggatcacaccttgnattgctggcgatgatctgattcagtcagatgtgatattgg 96 |||||| |||||||||||| |||||||| |||||||| || || || ||||||||| | | Sbjct: 832 tgaaggtgatcacaccttg-attgctggtgatgatcttatccattcggatgtgatactag 890 Query: 97 ggtccaaaaagattgaggctcctgtattgtttcgagggattggacatgcggccaatccat 156 |||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct: 891 ggtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggctaatccat 950 Query: 157 ccaacagcttggttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccag 216 | ||||| |||||| ||||||||||||| ||||| || || || |||||||| || ||| Sbjct: 951 caaacagtttggttctgaaggttctatcagcctctccatcagcatattcagctaatccaa 1010 Query: 217 ggactaagttggcatccgttccatctctcacagggtcggccatatcactggtttctgtta 276 ||||||||| || || |||||| ||||| ||||| || |||||| ||||||| |||| Sbjct: 1011 agactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttcggtta 1070 Query: 277 tgcaggctaggaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaaca 336 ||||||| || || |||||||| ||| || ||||||||||||| ||| ||||||||||| Sbjct: 1071 tgcaggcaagaaataatgctcgggtgctgctatctggatcactcgatctgtttagcaacc 1130 Query: 337 ggttcc 342 |||||| Sbjct: 1131 ggttcc 1136
>gb|BT017639.1| Zea mays clone EL01N0438G02.c mRNA sequence Length = 1151 Score = 214 bits (108), Expect = 1e-52 Identities = 250/296 (84%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 47 cacaccttgnattgctggcgatgatctgattcagtcagatgtgatattggggtccaaaaa 106 ||||||||| |||||||| |||||||| || || || ||||||||| ||||||| |||| Sbjct: 1 cacaccttg-attgctggtgatgatcttatccattcggatgtgatactggggtctgaaaa 59 Query: 107 gattgaggctcctgtattgtttcgagggattggacatgcggccaatccatccaacagctt 166 ||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||| || Sbjct: 60 gattgaggctcctgtattgtttcgaggaattggacacatggctaatccatcaaacagttt 119 Query: 167 ggttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccagggactaagtt 226 |||| ||||||||||||| ||||| || || || |||||||| || ||| ||||||||| Sbjct: 120 ggttctgaaggttctatcagcctctccatcagcatattcagctaatccaaagactaagtt 179 Query: 227 ggcatccgttccatctctcacagggtcggccatatcactggtttctgttatgcaggctag 286 || || |||||| ||||| ||||| || |||||| ||||||| ||||||||||| || Sbjct: 180 agcgtctcctccatcgctcactgggtcagctatatcattggtttcggttatgcaggcaag 239 Query: 287 gaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaacaggttcc 342 || |||||||| ||| || ||||||||||||| ||| ||||||||||| |||||| Sbjct: 240 aaataatgctcgggtgctgctatctggatcactcgatctgtttagcaaccggttcc 295
>gb|BT017987.1| Zea mays clone EL01N0525H08.c mRNA sequence Length = 1602 Score = 208 bits (105), Expect = 9e-51 Identities = 247/293 (84%), Gaps = 1/293 (0%) Strand = Plus / Plus Query: 37 tgaaggggatcacaccttgnattgctggcgatgatctgattcagtcagatgtgatattgg 96 |||||| |||||||||||| |||||||| |||||||| || || || ||||||||| ||| Sbjct: 477 tgaaggtgatcacaccttg-attgctggtgatgatcttatccattcggatgtgatactgg 535 Query: 97 ggtccaaaaagattgaggctcctgtattgtttcgagggattggacatgcggccaatccat 156 |||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct: 536 ggtctgaaaagattgaggctcctgtattgtttcgaggaattggacacatggctaatccat 595 Query: 157 ccaacagcttggttttgaaggttctatctgcctcgccgtcggcgtattcagcaaacccag 216 | ||||| |||||| ||||||||||||| ||||| || || || |||||||| || ||| Sbjct: 596 caaacagtttggttctgaaggttctatcagcctctccatcagcatattcagctaatccaa 655 Query: 217 ggactaagttggcatccgttccatctctcacagggtcggccatatcactggtttctgtta 276 ||||||||| || || |||||| ||||| ||||| || |||||| ||||||| |||| Sbjct: 656 agactaagttagcgtctcctccatcgctcactgggtcagctatatcattggtttcggtta 715 Query: 277 tgcaggctaggaacaatgctcgtgtgttgatatctggatcactggatttgttt 329 ||||||| || || |||||||| ||| || ||||||||||||| ||| ||||| Sbjct: 716 tgcaggcaagaaataatgctcgggtgctgctatctggatcactcgatctgttt 768
>gb|BT016706.1| Zea mays clone Contig539 mRNA sequence Length = 936 Score = 194 bits (98), Expect = 1e-46 Identities = 282/342 (82%), Gaps = 1/342 (0%) Strand = Plus / Plus Query: 1 ggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgnattg 60 |||||||||||||||||| |||||| | | || |||||| |||||||||||| |||| Sbjct: 579 ggttattgaccacattaactatgccactatggatgttgaaggcgatcacaccttg-attg 637 Query: 61 ctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgaggctcctg 120 ||| |||||||| |||||||||||||| ||| ||||||| |||||||| |||||||||| Sbjct: 638 ttggtgatgatcttattcagtcagatgtcatactggggtctaaaaagatcgaggctcctg 697 Query: 121 tattgtttcgagggattggacatgcggccaatccatccaacagcttggttttgaaggttc 180 |||| ||||| || |||||||| |||| |||||||| ||||| |||||| |||| || | Sbjct: 698 tattatttcgtggaattggacacacggctaatccatcaaacagtttggttatgaaagtcc 757 Query: 181 tatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttccat 240 |||||||||| || || || || ||||| |||||| ||||||||| | | ||||| Sbjct: 758 tatctgcctctccatcagcatactcagctaacccaaagactaagttatcgttgcctccat 817 Query: 241 ctctcacagggtcggccatatcactggtttctgttatgcaggctaggaacaatgctcgtg 300 | || || ||||| || |||||| ||||||| ||||||||||| || || |||||||| | Sbjct: 818 cgcttactgggtcagctatatcattggtttcggttatgcaggcaagaaataatgctcggg 877 Query: 301 tgttgatatctggatcactggatttgtttagcaacaggttcc 342 || || ||||||||||||| ||| | ||||||||| |||||| Sbjct: 878 tgctgctatctggatcacttgatctttttagcaaccggttcc 919
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 107 bits (54), Expect = 2e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 181 tatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttccat 240 |||| ||||| ||||| || || |||||||||||| | |||||||||| ||| ||||| Sbjct: 5919357 tatccgcctctccgtcagcatactcagcaaacccaaagtctaagttggcttcccctccat 5919416 Query: 241 ctctcacagggtcggccatatcactggtttctgttatgcagg 282 |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 5919417 ctctcacagggtcggctatatcactggtttctgttatgcagg 5919458 Score = 83.8 bits (42), Expect = 3e-13 Identities = 97/114 (85%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 1 ggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgnattg 60 ||||||||| |||||||||||||| ||||||| ||||||| ||||| || ||| |||| Sbjct: 5918631 ggttattgatcacattaattatgctgccactgatgctgaaggtgatcatactttg-attg 5918689 Query: 61 ctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgagg 114 |||| ||||| || || ||||||||||||||| ||||||| || || ||||||| Sbjct: 5918690 ctggtgatgacctcatccagtcagatgtgatactggggtcaaagaaaattgagg 5918743 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 277 tgcaggctaggaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaaca 336 ||||||| || ||||||||||| || ||||||||||||||||| ||| |||||||||||| Sbjct: 5919890 tgcaggcaagaaacaatgctcgggtcttgatatctggatcactcgatctgtttagcaaca 5919949 Query: 337 ggt 339 ||| Sbjct: 5919950 ggt 5919952 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 112 aggctcctgtattgtttcgagggattggacatgcggccaatccatccaacagcttggt 169 |||| |||||||| ||||| || ||||||||||||| |||||||| ||||||||||| Sbjct: 5919166 aggcccctgtattatttcggggaattggacatgcggttaatccatctaacagcttggt 5919223
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 107 bits (54), Expect = 2e-20 Identities = 90/102 (88%) Strand = Plus / Plus Query: 181 tatctgcctcgccgtcggcgtattcagcaaacccagggactaagttggcatccgttccat 240 |||| ||||| ||||| || || |||||||||||| | |||||||||| ||| ||||| Sbjct: 61805 tatccgcctctccgtcagcatactcagcaaacccaaagtctaagttggcttcccctccat 61864 Query: 241 ctctcacagggtcggccatatcactggtttctgttatgcagg 282 |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 61865 ctctcacagggtcggctatatcactggtttctgttatgcagg 61906 Score = 83.8 bits (42), Expect = 3e-13 Identities = 97/114 (85%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 1 ggttattgaccacattaattatgcctccactgagtctgaaggggatcacaccttgnattg 60 ||||||||| |||||||||||||| ||||||| ||||||| ||||| || ||| |||| Sbjct: 61079 ggttattgatcacattaattatgctgccactgatgctgaaggtgatcatactttg-attg 61137 Query: 61 ctggcgatgatctgattcagtcagatgtgatattggggtccaaaaagattgagg 114 |||| ||||| || || ||||||||||||||| ||||||| || || ||||||| Sbjct: 61138 ctggtgatgacctcatccagtcagatgtgatactggggtcaaagaaaattgagg 61191 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 277 tgcaggctaggaacaatgctcgtgtgttgatatctggatcactggatttgtttagcaaca 336 ||||||| || ||||||||||| || ||||||||||||||||| ||| |||||||||||| Sbjct: 62338 tgcaggcaagaaacaatgctcgggtcttgatatctggatcactcgatctgtttagcaaca 62397 Query: 337 ggt 339 ||| Sbjct: 62398 ggt 62400 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 112 aggctcctgtattgtttcgagggattggacatgcggccaatccatccaacagcttggt 169 |||| |||||||| ||||| || ||||||||||||| |||||||| ||||||||||| Sbjct: 61614 aggcccctgtattatttcggggaattggacatgcggttaatccatctaacagcttggt 61671
>gb|AY175374.1| Branchiostoma belcheri tsingtaunese dolichyl-diphosphooligosaccharide--protein glycotransferase mRNA, complete cds Length = 1987 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Plus Query: 279 caggctaggaacaatgctcgtgtg 302 |||||||||||||||||||||||| Sbjct: 682 caggctaggaacaatgctcgtgtg 705
>gb|AF541963.1| Glycine max cv Williams 82 BAC clone Gm_ISb001_091_F11, complete sequence Length = 118773 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cagatgtgatattggggtcca 102 ||||||||||||||||||||| Sbjct: 37624 cagatgtgatattggggtcca 37604
>gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, complete sequence Length = 193158 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 gcttggttttgaaggttctatctg 186 |||||||||| ||||||||||||| Sbjct: 167326 gcttggtttttaaggttctatctg 167303
>gb|BC104674.1| Rattus norvegicus hydrocephalus-inducing protein, mRNA (cDNA clone IMAGE:7304622), partial cds Length = 1840 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tctgaaggggatcacacctt 54 |||||||||||||||||||| Sbjct: 1588 tctgaaggggatcacacctt 1607
>gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete sequence Length = 167795 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctgattcagtcagatgtgat 91 |||||||||||||||||||| Sbjct: 25428 ctgattcagtcagatgtgat 25447
>gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete sequence Length = 163973 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctgattcagtcagatgtgat 91 |||||||||||||||||||| Sbjct: 25518 ctgattcagtcagatgtgat 25537
>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence Length = 122810 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gatattggggtccaaaaaga 108 |||||||||||||||||||| Sbjct: 74164 gatattggggtccaaaaaga 74145
>gb|AC153928.5| Mus musculus 6 BAC RP23-66O20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 241211 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tcagcaaacccagggactaa 223 |||||||||||||||||||| Sbjct: 47658 tcagcaaacccagggactaa 47639
>gb|AC108476.5| Homo sapiens BAC clone RP11-1413K20 from 2, complete sequence Length = 139342 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 caacagcttggttttgaagg 177 |||||||||||||||||||| Sbjct: 132595 caacagcttggttttgaagg 132576
>ref|XM_226468.3| PREDICTED: Rattus norvegicus hydrocephalus-inducing protein (LOC292017), mRNA Length = 17592 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tctgaaggggatcacacctt 54 |||||||||||||||||||| Sbjct: 17367 tctgaaggggatcacacctt 17386
>gb|AC153612.6| Mus musculus 6 BAC RP23-435I4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197401 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tcagcaaacccagggactaa 223 |||||||||||||||||||| Sbjct: 48509 tcagcaaacccagggactaa 48528
>gb|BC091376.1| Rattus norvegicus hydrocephalus-inducing protein, mRNA (cDNA clone IMAGE:7320438), partial cds Length = 2252 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tctgaaggggatcacacctt 54 |||||||||||||||||||| Sbjct: 1998 tctgaaggggatcacacctt 2017
>gb|AC131693.5| Mus musculus BAC clone RP23-391D10 from 14, complete sequence Length = 220202 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 tatcactggtttctgttatgcagg 282 |||||||||||| ||||||||||| Sbjct: 180219 tatcactggtttgtgttatgcagg 180196
>gb|AC166328.4| Mus musculus BAC clone RP23-31H5 from chromosome 5, complete sequence Length = 215189 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 gcttggttttgaaggttctatctg 186 |||||||||| ||||||||||||| Sbjct: 34787 gcttggtttttaaggttctatctg 34764 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,503,205 Number of Sequences: 3902068 Number of extensions: 2503205 Number of successful extensions: 43406 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43344 Number of HSP's gapped (non-prelim): 53 length of query: 345 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 323 effective length of database: 17,147,199,772 effective search space: 5538545526356 effective search space used: 5538545526356 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)