ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9i12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloropl... 35 0.14
2PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chlor... 34 0.30
3PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloropl... 34 0.40
4PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloropl... 34 0.40
5PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chlor... 33 0.52
6PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloropl... 33 0.52
7PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloropl... 33 0.52
8PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chlor... 33 0.68
9PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloropl... 33 0.88
10PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloropl... 33 0.88
11PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chlor... 33 0.88
12TL19_ARATH (P82658) Thylakoid lumenal 19 kDa protein, chloroplas... 32 2.0
13PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloropl... 31 2.6
14PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chlor... 31 2.6
15UCP8_SCHPO (O94685) UBA domain-containing protein 8 31 3.4
16PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloropl... 31 3.4
17RDRP_LVX (P27327) RNA replication protein (ORF 1 protein) [Inclu... 30 4.4
18XYNB_STRLI (P26515) Endo-1,4-beta-xylanase B precursor (EC 3.2.1... 29 9.8
19WNT1_XENLA (P10108) Protein Wnt-1 precursor (XWnt-1) (XInt-1) 29 9.8
20MUTS_SYMTH (Q67NK1) DNA mismatch repair protein mutS 29 9.8

>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor|
          Length = 274

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 6/165 (3%)
 Frame = -1

Query: 535 YGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQ 356
           +G G+S  +P +F     P+D++       D         RFASP    L SV++ P  +
Sbjct: 120 HGVGWSPIIPYAFS---VPQDWNEVPVSIADLGGTEI-DLRFASPKEGRL-SVIVAPVLR 174

Query: 355 LKITFLEAKDITELGTLKEASKLFVPG------SAKIYSARTIKVKDQEGIRMYYFYEFG 194
                 +   I  +G   +    F P         K+ S+    V + +G R+YY  +F 
Sbjct: 175 FADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSN---VAEHDG-RLYY--QFE 228

Query: 193 FDKQHVALMATVDSGKTYIAAATAPETRWETDGVTLRSAAVSMSL 59
            +  HV + AT    + Y+ + T    +W+     L+  A S  +
Sbjct: 229 LEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 273



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>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane protein)
          Length = 265

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 19/180 (10%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF I++P  ++   E E       Y G   +V  +   F   D +  VSV+I P++
Sbjct: 100 YTGEGFKIQIPSKWNPSKEIE-------YPG---QVLRFEDNF---DATSNVSVMITPTD 146

Query: 358 QLKITFLEAKD--ITELGTLKEASKLFVPGSAK--------IYSARTIKVKDQE-GIRMY 212
           +  IT   + +  ++++  L    + +V  +A         + +A  ++   QE G + Y
Sbjct: 147 KKSITDYGSPEQFLSQVNYLL-GKQAYVGETASEGGFDANAVATANILETSTQEIGGKEY 205

Query: 211 YFYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 56
           Y+              +H  + ATV+ GK YI  A A + RW +     + +AA S S+A
Sbjct: 206 YYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 265



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>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein) (OEC23)
          Length = 263

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 11/155 (7%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF + +P  ++   E E F   +  Y D     +  +   +P   + +     P  
Sbjct: 98  YSGDGFKLSIPSKWNPSKERE-FPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEE 156

Query: 358 QL-KITFLEAKDITELGTLKEASKLFVP---GSAKIYSARTIKVKDQEGIRMYYFYEF-- 197
            L K+ +L  K      T  E    F P    +A I  A    V  ++    YYF     
Sbjct: 157 FLSKVDYLLGKQAYFGKTASEGG--FDPDAVATANILEATASNVNGKD----YYFVSVLT 210

Query: 196 -----GFDKQHVALMATVDSGKTYIAAATAPETRW 107
                    +H  + ATV+ GK YI  A A + RW
Sbjct: 211 RTADGDEGGKHQLITATVNDGKLYICKAQAGDKRW 245



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>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 260

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 8/172 (4%)
 Frame = -1

Query: 547 WSQYYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIK 368
           ++ Y G GF ++VP  ++   E E +   +  Y D     +      +P   + ++    
Sbjct: 92  FTAYSGDGFQVQVPAKWNPSREVE-YPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGS 150

Query: 367 PSNQL-KITFLEAKDITELGTLKEASKLFVPGSAKIYSARTIKVKDQEGIRMYYFY---- 203
           P   L ++ +L  K      T  E    F   +    +     ++D  G   YY      
Sbjct: 151 PEEFLSQVNYLLGKQAYFGETASEGG--FDNNAVATANILETNIQDVGGKPYYYLSVLTR 208

Query: 202 --EFGFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 56
             +     +H  + ATV+ GK YI  A A + RW +     +  AA S S+A
Sbjct: 209 TADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260



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>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane protein)
          Length = 263

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF ++VP  ++   E E       Y G   +V  +   F   D +  ++V++ P++
Sbjct: 98  YNGDGFKVQVPAKWNPSKEIE-------YPG---QVLRFEDNF---DATSNLNVMVTPTD 144

Query: 358 QLKITFLEAKD--ITELGTLKEASKLFVPGSAK-------IYSARTIKVKDQE-GIRMYY 209
           +  IT   + +  ++++  L      F   +++       + +A  ++   QE G + YY
Sbjct: 145 KKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYY 204

Query: 208 FYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 56
           +              +H  + ATV+ GK YI  A A + RW +     + SAA S S+A
Sbjct: 205 YLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263



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>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 265

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
 Frame = -1

Query: 532 GSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQL 353
           G GF I +P  ++   E E F   +  Y D     +      +P   + +     P   L
Sbjct: 102 GDGFKILIPSKWNPSKEVE-FPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFL 160

Query: 352 -KITFLEAKDITELGTLKEASKLFVPGSAKIY-----SARTIKVKDQEGIRMYYFYEFGF 191
            ++ +L  K      T+ E    F P + +       S   +  KD   I +      G 
Sbjct: 161 SQVDYLLGKQAYFGKTISEGG--FEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGD 218

Query: 190 DK-QHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 56
           +  +H+ + ATV  GK YI  A A + RW       + SAA S S A
Sbjct: 219 EGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265



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>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 260

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 17/178 (9%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF +++P  ++   E E F   +  Y D     +      +P   + ++    P  
Sbjct: 95  YNGDGFKLQIPAKWNPSKEIE-FPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEE 153

Query: 358 QL-KITFLEAKDI---------------TELGTLKEASKLFVPGSAKIYSARTIKVKDQE 227
            L K+ +L  K                      L EAS   V G    Y +   +  D +
Sbjct: 154 FLSKVDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGD 213

Query: 226 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 56
                   E G   +H  + ATV+ GK YI  A A + RW       + +AA S S+A
Sbjct: 214 --------EGG---KHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260



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>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 266

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 19/180 (10%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF +++P  ++   E E       Y G   +V  +   F   D +  V V I P++
Sbjct: 101 YNGDGFKLQIPSKWNPNKEVE-------YPG---QVLRFEDNF---DATSNVIVAITPTD 147

Query: 358 QLKIT-------FLEAKDITELGTLKEASKLFVPG---SAKIYSARTIKVKDQE-GIRMY 212
           +  IT       FL   D   LG    + K    G   S  +  A  ++    E G + Y
Sbjct: 148 KKSITDFGSPEQFLSQVDYL-LGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQY 206

Query: 211 YFYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 56
           Y+              +H  + ATV+ GK YI  A A + RW       + + A S SLA
Sbjct: 207 YYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266



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>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 258

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 17/178 (9%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF ++VP  ++   E E +   +  Y D     +      +P   + ++    P  
Sbjct: 93  YNGDGFKLQVPAKWNPSKEVE-YPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEE 151

Query: 358 QL-KITFLEAKDI------TELG---------TLKEASKLFVPGSAKIYSARTIKVKDQE 227
            L K+ +L  K        +E G          L EAS   V G    Y +   +  D +
Sbjct: 152 FLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGD 211

Query: 226 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 56
                   E G   +H  + ATV+ GK YI  A A + RW       + +AA S S+A
Sbjct: 212 --------EGG---KHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258



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>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 264

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF++ +P  ++   E E F   +  Y D   V +  +   +P   + ++    P  
Sbjct: 99  YTGDGFNLLIPAKWNPSKEVE-FPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157

Query: 358 QLK-ITFLEAKDITELGTLKEASKLFVPGSAKIYSARTIKVKDQE-GIRMYYFYEF---- 197
            L  + +L  K      T  E    F P S  + +A  ++V     G + YY        
Sbjct: 158 FLSTVDYLLGKQAYSGKTASEGG--FDPDS--VATANILEVSTPVVGGKQYYNISVLTRT 213

Query: 196 ---GFDKQHVALMATVDSGKTYIAAATAPETRW 107
                  +H  + ATV  GK YI  A A + RW
Sbjct: 214 ADGDEGGKHHVISATVTDGKLYICKAQAGDKRW 246



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>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 265

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 19/180 (10%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF +++P  ++   E E       Y G   +V  +   F   D +  V V I P++
Sbjct: 100 YNGDGFKLQIPSKWNPNKEVE-------YPG---QVLRFEDNF---DATSNVIVAITPTD 146

Query: 358 QLKIT-------FLEAKDITELGTLKEASKLFVPG---SAKIYSARTIKVKDQE-GIRMY 212
           +  IT       FL   D   LG    + K    G   S  +  A  ++    E G + Y
Sbjct: 147 KKSITDFGSPEQFLSQVDYL-LGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPY 205

Query: 211 YFYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 56
           Y+              +H  + ATV+ GK YI  A A + RW       + + A S SLA
Sbjct: 206 YYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265



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>TL19_ARATH (P82658) Thylakoid lumenal 19 kDa protein, chloroplast precursor|
           (P19)
          Length = 229

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -1

Query: 283 VPGSAKIYSARTIKVKDQEGIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWE 104
           + G+ K+ S      KD+ G ++YY YE     +H  +  T    + Y     AP   W 
Sbjct: 155 IAGADKVVSEER---KDETG-QVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWN 210

Query: 103 TDGVTL 86
            D  TL
Sbjct: 211 RDHDTL 216



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>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 267

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 16/160 (10%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF + VP  ++   E E F   +  Y D     +  +    P   + ++    P +
Sbjct: 102 YNGDGFKLLVPSKWNPSKEKE-FPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPED 160

Query: 358 QL-KITFLEAKD---------------ITELGTLKEASKLFVPGSAKIYSARTIKVKDQE 227
            L ++ +L  K                +     + E+S   V G  K Y + T+  +  +
Sbjct: 161 FLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDG--KQYYSITVLTRTAD 218

Query: 226 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRW 107
           G             +H  + ATV  GK YI  A A + RW
Sbjct: 219 GDE---------GGKHQVIAATVKDGKLYICKAQAGDKRW 249



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>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 268

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 15/176 (8%)
 Frame = -1

Query: 538 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 359
           Y G GF ++VP  ++   E E F   +  Y D     +      +P   + ++    P  
Sbjct: 103 YNGDGFKLQVPAKWNPSKEVE-FPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEE 161

Query: 358 QL-KITFLEAKDIT----------ELGTLKEASKLFVPGSA---KIYSARTIKVKDQEGI 221
            L ++ FL  K             E G +  A+ L    S    K Y   ++  +  +G 
Sbjct: 162 FLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGD 221

Query: 220 RMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 56
                       +H  + ATV+ GK YI  A A + RW +     + +AA S S+A
Sbjct: 222 E---------GGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268



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>UCP8_SCHPO (O94685) UBA domain-containing protein 8|
          Length = 884

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 76  QPNAASLHLSPTSSLEQWQQRYMSSHYPRWPLEQHVVCQNQIHRSNTS 219
           +P A SLH +P+SSLE  Q  + ++ +     +  V  QNQ + ++ S
Sbjct: 441 EPTAVSLHENPSSSLEDLQSAFQNTSF-----QDQVSTQNQANTADIS 483



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>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein) (Fragment)
          Length = 217

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
 Frame = -1

Query: 532 GSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQL 353
           G GF ++VP  ++   E E       Y G   +V  Y   F   D +  ++V++ P+++ 
Sbjct: 54  GDGFQVQVPAKWNPSREVE-------YPG---QVLRYEDNF---DATSNLNVMVTPTDKK 100

Query: 352 KITFLEAKD--ITELGTLKEASKLFVPGSAK-------IYSARTIKVKDQE-GIRMYYFY 203
            IT   + +  ++++  L      F   + +       + +A  ++   Q+ G + YY+ 
Sbjct: 101 SITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYL 160

Query: 202 EF-------GFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 56
                        +H  + ATV+ GK YI  A A + RW +     +  AA S S+A
Sbjct: 161 SVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217



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>RDRP_LVX (P27327) RNA replication protein (ORF 1 protein) [Includes:|
           RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC
           3.6.1.-)] (Fragment)
          Length = 162

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
 Frame = -1

Query: 505 PSFDDVLEPEDFSAAMTYYGDKAKVRAYAAR-FASPDRSELVSVVIKPSNQLKITFLEAK 329
           P+FD   E      A+ Y+  K +V    A+ +A  D ++  + ++KPS +L    +E K
Sbjct: 10  PTFDANTE-----CAIAYHHTKYQVEQGTAQLYAGDDMAQDTTPILKPSFRLIADRIELK 64

Query: 328 D-------------------ITELGTLKEASKLFVPGSAKIYSARTIKVKDQEGIRMYYF 206
                               +T  G +KE  KLF       +  +T +VK      + + 
Sbjct: 65  SKEVTHTQVPGEYATFCGWCVTPKGIIKEPRKLFASLQLAKHIGKTAEVKTNYAHDLAHA 124

Query: 205 YEFGFDKQHV 176
           Y  G + Q V
Sbjct: 125 YRLGDELQDV 134



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>XYNB_STRLI (P26515) Endo-1,4-beta-xylanase B precursor (EC 3.2.1.8) (Xylanase|
           B) (1,4-beta-D-xylan xylanohydrolase B)
          Length = 335

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = -1

Query: 307 LKEASKLFVPGSAKIYSARTIKVKDQEGIRMYYFYEFGFDKQHVALMATVDSGKTYIAAA 128
           L   + L +PG+A+   A T+   +QEG    Y+Y F  D Q    M  + SG  Y    
Sbjct: 27  LAALAALMLPGTAQ---ADTVVTTNQEGTNNGYYYSFWTDSQGTVSM-NMGSGGQY---- 78

Query: 127 TAPETRWETDG 95
               T W   G
Sbjct: 79  ---STSWRNTG 86



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>WNT1_XENLA (P10108) Protein Wnt-1 precursor (XWnt-1) (XInt-1)|
          Length = 371

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -3

Query: 179 CCSNGHRG*WEDIYRCCHCSRDEVGDRWSDAAFGCCIYVSCXFCKTER 36
           CC  G+R   E +   CHC+            F  C +V+C  C + +
Sbjct: 330 CCGRGYRSLAEKVTERCHCT------------FNWCCHVTCLNCTSSQ 365



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>MUTS_SYMTH (Q67NK1) DNA mismatch repair protein mutS|
          Length = 875

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +2

Query: 437 GLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPRPRV 559
           GL A +  R  EIL   +  EG R +  EAAA  LR +P V
Sbjct: 791 GLPASVVERAREILATLEEQEGERKSRREAAAQRLRRQPAV 831


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,363,357
Number of Sequences: 219361
Number of extensions: 1752190
Number of successful extensions: 5169
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5159
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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