ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUTS_BORBU (O51737) DNA mismatch repair protein mutS 32 1.6
2MUTS_BORGA (Q65ZX6) DNA mismatch repair protein mutS 31 2.7

>MUTS_BORBU (O51737) DNA mismatch repair protein mutS|
          Length = 862

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 380 SLQNEFSSMWSIFRNIQDVKCTRYI*YSIKFF*SRIQMFIPLIKIFNSMNFKF 222
           +L+  F ++W I R I  ++  RYI     F    + +F  + K+F+  NF +
Sbjct: 335 TLRETFINIWDIERIISRIQMKRYIKKDFLFIEKALSVFFTVKKLFDKHNFDY 387



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>MUTS_BORGA (Q65ZX6) DNA mismatch repair protein mutS|
          Length = 862

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 380 SLQNEFSSMWSIFRNIQDVKCTRYI*YSIKFF*SRIQMFIPLIKIFNSMNFKF 222
           +L+  F ++W I R I  ++  RYI     F    + +F  + K+F+  NF +
Sbjct: 335 TLREAFINIWDIERIISRIQMKRYIKKDFLFIEKALSVFFLVKKLFDKHNFDY 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,049,691
Number of Sequences: 219361
Number of extensions: 1344476
Number of successful extensions: 2840
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2839
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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