>CSN6A_ARATH (Q8W206) COP9 signalosome complex subunit 6a (Signalosome subunit|
           6a) (AtCSN6a)
          Length = 317

 Score =  247 bits (631), Expect(2) = 5e-70
 Identities = 127/168 (75%), Positives = 138/168 (82%)
 Frame = +1

Query: 85  KDLPVTIYESELHVIDGGPQLIFVKSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAA 264
           KDLPVTIYESELHVIDG PQLIF  ++YTIETVEAERISVDHVAHLKPSDGGSAATQLAA
Sbjct: 151 KDLPVTIYESELHVIDGIPQLIFAHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAA 210

Query: 265 HLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAMESEKFQDDF 444
           HLTGIHSAIKMLNSR+RV+ Q L AMQKGD   DN             PAMESE+FQD+F
Sbjct: 211 HLTGIHSAIKMLNSRIRVLYQNLAAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNF 270

Query: 445 LTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAFM 588
           L EYND LL+TYLAM TNCSS MNE+V+KFNT Y+R+  RRGGR AFM
Sbjct: 271 LMEYNDKLLITYLAMITNCSSNMNEMVDKFNTAYDRN-TRRGGRTAFM 317



 Score = 37.0 bits (84), Expect(2) = 5e-70
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +3

Query: 30  INXSPVYLLLNPAINHSQXGSP 95
           IN SPVY+LLNPAINH+Q   P
Sbjct: 133 INESPVYVLLNPAINHTQKDLP 154

>CSN6B_ARATH (Q8W1P0) COP9 signalosome complex subunit 6b (Signalosome subunit|
           6b) (AtCSN6b)
          Length = 317

 Score =  239 bits (609), Expect(2) = 2e-67
 Identities = 121/168 (72%), Positives = 137/168 (81%)
 Frame = +1

Query: 85  KDLPVTIYESELHVIDGGPQLIFVKSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAA 264
           KDLPVTIYESE HVIDG PQ IFV ++YTIETVEAERISVDHVAHLKPSDGGSAATQLAA
Sbjct: 151 KDLPVTIYESEFHVIDGIPQSIFVHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAA 210

Query: 265 HLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAMESEKFQDDF 444
           HLTGIHSAIKMLNSR+RV+ Q++ AMQKGD P +N             PA ESEKF ++F
Sbjct: 211 HLTGIHSAIKMLNSRIRVLYQHIVAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENF 270

Query: 445 LTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAFM 588
           L EYND LLM+YLAM TNC+S MNE+V+KFNT Y++  +RRGGR AFM
Sbjct: 271 LMEYNDKLLMSYLAMITNCTSNMNEVVDKFNTAYDKH-SRRGGRTAFM 317



 Score = 37.0 bits (84), Expect(2) = 2e-67
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +3

Query: 30  INXSPVYLLLNPAINHSQXGSP 95
           IN SPVY+LLNPAINH+Q   P
Sbjct: 133 INESPVYVLLNPAINHAQKDLP 154

>CSN6_XENLA (Q6NUC2) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
          Length = 318

 Score =  133 bits (334), Expect = 4e-31
 Identities = 69/174 (39%), Positives = 102/174 (58%)
 Frame = +1

Query: 64  LQSTTPXKDLPVTIYESELHVIDGGPQLIFVKSNYTIETVEAERISVDHVAHLKPSDGGS 243
           L   T   DLPV++YES + +++G   ++  + +YT+ T EAERI VDHVA +  +  G 
Sbjct: 145 LNPMTKHTDLPVSVYESVIDIVNGEATMLLAELSYTLATEEAERIGVDHVARMTATGSGE 204

Query: 244 AATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAMES 423
            +T +A HL   HSAIKML+SRVR+I +Y+ A + G++P ++             P + +
Sbjct: 205 NST-VAEHLIAQHSAIKMLHSRVRLILEYVRAAEGGEVPFNHEILREASALCHCLPVLST 263

Query: 424 EKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAF 585
           +KF+ DF  + ND  LM+YL   T   +TMN+ V KFN  Y+R    R  RG F
Sbjct: 264 DKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNILYDRQGIGRRMRGLF 317

>CSN6_HUMAN (Q7L5N1) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (SGN6) (JAB1-containing signalosome subunit 6)
           (Vpr-interacting protein) (hVIP) (MOV34 homolog)
          Length = 327

 Score =  132 bits (333), Expect = 6e-31
 Identities = 69/174 (39%), Positives = 101/174 (58%)
 Frame = +1

Query: 64  LQSTTPXKDLPVTIYESELHVIDGGPQLIFVKSNYTIETVEAERISVDHVAHLKPSDGGS 243
           L   T   DLPV+++ES + +I+G   ++F +  YT+ T EAERI VDHVA +  +  G 
Sbjct: 154 LNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGE 213

Query: 244 AATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAMES 423
            +T +A HL   HSAIKML+SRV++I +Y+ A + G++P ++             P + +
Sbjct: 214 NST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLST 272

Query: 424 EKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAF 585
           +KF+ DF  + ND  LM YL   T   +TMN+ V KFN  Y+R    R  RG F
Sbjct: 273 DKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRRMRGLF 326

>CSN6_MOUSE (O88545) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (SGN6) (JAB1-containing signalosome subunit 6)
          Length = 324

 Score =  132 bits (333), Expect = 6e-31
 Identities = 69/174 (39%), Positives = 101/174 (58%)
 Frame = +1

Query: 64  LQSTTPXKDLPVTIYESELHVIDGGPQLIFVKSNYTIETVEAERISVDHVAHLKPSDGGS 243
           L   T   DLPV+++ES + +I+G   ++F +  YT+ T EAERI VDHVA +  +  G 
Sbjct: 151 LNPMTKHTDLPVSVFESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGE 210

Query: 244 AATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAMES 423
            +T +A HL   HSAIKML+SRV++I +Y+ A + G++P ++             P + +
Sbjct: 211 NST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLST 269

Query: 424 EKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAF 585
           +KF+ DF  + ND  LM YL   T   +TMN+ V KFN  Y+R    R  RG F
Sbjct: 270 DKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDRQGIGRRMRGLF 323

>CSN6_DROME (Q9VCY3) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
           (Dch6)
          Length = 341

 Score =  113 bits (282), Expect = 5e-25
 Identities = 58/165 (35%), Positives = 93/165 (56%)
 Frame = +1

Query: 91  LPVTIYESELHVIDGGPQLIFVKSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL 270
           LP+ ++ES + ++DG   ++FV   YT+ T EAERI VDHVA +  ++ G  +  +A HL
Sbjct: 177 LPLKLFESLIDLVDGEATMLFVPLTYTLATEEAERIGVDHVARMTSNESGEKSV-VAEHL 235

Query: 271 TGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAMESEKFQDDFLT 450
               SAIKMLN+R++++ QY+  ++ G +  +              P M+   FQ++F T
Sbjct: 236 VAQDSAIKMLNTRIKIVLQYIRDVEAGKLRANQEILREAYALCHRLPVMQVPAFQEEFYT 295

Query: 451 EYNDTLLMTYLAMFTNCSSTMNELVEKFNTTYERSPARRGGRGAF 585
           + ND  L++YL   T   + M+  V KFN  Y+R  + R  RG +
Sbjct: 296 QCNDVGLISYLGTLTKGCNDMHHFVNKFNMLYDRQGSARRMRGLY 340

>RPN8_SCHPO (O74440) 26S proteasome regulatory subunit rpn8|
          Length = 324

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
 Frame = +1

Query: 91  LPVTIYESELHVIDGGPQL--IFVKSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAA 264
           LP   Y +   + D G +    FV    +IE  EAE I V+H+  L+ +   S  T LA 
Sbjct: 140 LPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHL--LRDTRDASVGT-LAT 196

Query: 265 HLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXP----------- 411
            +T    +++ L  R+  I  YL  +  G +P+++             P           
Sbjct: 197 RVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQ 256

Query: 412 AMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVE 528
           A+ESE  Q  F    ND L+  Y++        +++L++
Sbjct: 257 ALESEA-QRAFNVNSNDQLMSIYISSIVRAVIALHDLLD 294

>CSN6B_BRAOL (P68357) COP9 signalosome complex subunit 6b (Signalosome subunit|
           6b) (Fragments)
          Length = 58

 Score = 37.7 bits (86), Expect(2) = 0.010
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +1

Query: 280 HSAIKMLNSRVRVIQQYLGAMQK 348
           H+  KMLNSR+RV+ QYLG+MQK
Sbjct: 36  HAQKKMLNSRIRVLHQYLGSMQK 58



 Score = 34.3 bits (77), Expect = 0.28
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +3

Query: 30 INXSPVYLLLNPAINHSQ 83
          IN SPVY+LLNP INH+Q
Sbjct: 21 INESPVYVLLNPTINHAQ 38



 Score = 20.8 bits (42), Expect(2) = 0.010
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 206 IMLPI*NHLTVALQQLN 256
           +ML I +HLT AL  +N
Sbjct: 6   VMLNISDHLTKALMDIN 22

>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 26/112 (23%), Positives = 45/112 (40%)
 Frame = +1

Query: 184 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPL 363
           + ERI VD +  +K     +    L++ L  +  A   +   +  + QY   +  G +  
Sbjct: 247 DTERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 304

Query: 364 DNXXXXXXXXXXXXXPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNE 519
           DN             P +  + F+    +  ND L++TYLA  T     +NE
Sbjct: 305 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356

>IF35_HUMAN (O00303) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 357

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 26/112 (23%), Positives = 45/112 (40%)
 Frame = +1

Query: 184 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPL 363
           + ERI VD +  +K     +    L++ L  +  A   +   +  + QY   +  G +  
Sbjct: 243 DTERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSA 300

Query: 364 DNXXXXXXXXXXXXXPAMESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNE 519
           DN             P +  + F+    +  ND L++TYLA  T     +NE
Sbjct: 301 DNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 352

>RPN8_YEAST (Q08723) 26S proteasome regulatory subunit RPN8|
          Length = 337

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 19/165 (11%)
 Frame = +1

Query: 91  LPVTIYESELHVIDGGP--QLIFVKSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAA 264
           LP   Y +   V D G   +  F+    TIE  EAE I V+   HL       AA  L+ 
Sbjct: 131 LPTDAYVAIEQVKDDGTSTEKTFLHLPCTIEAEEAEEIGVE---HLLRDVRDQAAGGLSI 187

Query: 265 HLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAME-------- 420
            LT    ++K L S+++ + +YL  +   ++P+++             P +         
Sbjct: 188 RLTNQLKSLKGLQSKLKDVVEYLDKVINKELPINHTILGKLQDVFNLLPNLGTPDDDEID 247

Query: 421 ---------SEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVE 528
                    S   Q     + ND L++ Y++         ++L+E
Sbjct: 248 VENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIE 292

>CSN6_CAEEL (Q95PZ0) COP9 signalosome complex subunit 6 (Signalosome subunit 6)|
          Length = 426

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +1

Query: 184 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQYLGAMQKGDI 357
           E+ER+ V+H+A L    G    +    H     +A+ ML +RV +I  YL  +Q G +
Sbjct: 178 ESERVGVNHIAKLSTKHGKDGKSVGKKHAEAQDAAMSMLQNRVDLIVAYLEKVQDGTL 235

>RPN8_NEUCR (Q8WZY4) 26S proteasome regulatory subunit rpn-8|
          Length = 352

 Score = 36.2 bits (82), Expect = 0.074
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 13/139 (9%)
 Frame = +1

Query: 151 FVKSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQY 330
           FV +   IE  EAE I V+   HL       A   L+  +T    +++ L+ R+R IQ Y
Sbjct: 163 FVHTPSIIEAEEAEEIGVE---HLLRDIRDVAVGTLSTRITNQMRSLQGLHHRLRDIQAY 219

Query: 331 LGAMQKGDIPLDNXXXXXXXXXXXXXPAMESEK-------------FQDDFLTEYNDTLL 471
           L  +  G +P+++             P + + K                    + ND L+
Sbjct: 220 LQKVLDGQLPVNHAILGNLQDVFNLLPNLSTPKSGPGATGTNADSELNHAMSIKTNDQLM 279

Query: 472 MTYLAMFTNCSSTMNELVE 528
             YL+      +  ++L+E
Sbjct: 280 AIYLSSLIRAITAFHDLIE 298

>RPN8_ASHGO (Q75F44) 26S proteasome regulatory subunit RPN8|
          Length = 326

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 19/165 (11%)
 Frame = +1

Query: 91  LPVTIYESELHVIDGGP--QLIFVKSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAA 264
           LP   Y +   V D G   +  FV     IE  EAE I V+   HL       AA  L+ 
Sbjct: 132 LPTDAYMAIEEVKDDGSSTERTFVHLPTAIEAEEAEEIGVE---HLLRDVRDQAAGNLSL 188

Query: 265 HLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAM--------- 417
            LT    +++ L  ++R I  YL  +  G +P ++             P +         
Sbjct: 189 RLTNQLKSLQGLQRKLRDIVAYLDKVNSGQLPANHIILGKLQDVFNLLPNLGSPDEEAPA 248

Query: 418 --------ESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVE 528
                    S   Q     + ND L++ Y++         + L+E
Sbjct: 249 TKKDDVLASSNTLQKALTVKTNDELMVIYISNLMRAIIAFDNLIE 293

>RPN8_CANGA (Q6FMD8) 26S proteasome regulatory subunit RPN8|
          Length = 329

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 19/165 (11%)
 Frame = +1

Query: 91  LPVTIYESELHVIDGGP--QLIFVKSNYTIETVEAERISVDHVAHLKPSDGGSAATQLAA 264
           LP   Y +   V D G   +  F+    T+E  EAE I V+   HL       AA  L+ 
Sbjct: 132 LPTDAYMAVEQVKDDGTSTEKTFLHLPCTVEAEEAEEIGVE---HLLRDVRDQAAGGLSI 188

Query: 265 HLTGIHSAIKMLNSRVRVIQQYLGAMQKGDIPLDNXXXXXXXXXXXXXPAM--------- 417
            LT    ++K L  ++  I  YL  +   ++P+++             P +         
Sbjct: 189 RLTNQLKSLKGLQKKLNDIVIYLNKVINNELPVNHTILGKLQDVFNLLPNLGYNEETDVS 248

Query: 418 --------ESEKFQDDFLTEYNDTLLMTYLAMFTNCSSTMNELVE 528
                    S   Q     + ND L++ Y+          ++L+E
Sbjct: 249 ATSNDMVTASNNLQRALTVKTNDELMVIYITNLVRAIIAFDDLIE 293

>THF1_SYNY3 (P73956) Protein thf1|
          Length = 240

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 26/93 (27%), Positives = 37/93 (39%)
 Frame = +1

Query: 52  FS*ILQSTTPXKDLPVTIYESELHVIDGGPQLIFVKSNYTIETVEAERISVDHVAHLKPS 231
           F+  +Q   P + LP  I+ +  H +D  P    V+ +       A  I +D       S
Sbjct: 60  FNSFMQGYQPAEQLPA-IFNALCHGVDQNPDQ--VRQDAKNVAASAHHIGLDAWVTAAAS 116

Query: 232 DGGSAATQLAAHLTGIHSAIKMLNSRVRVIQQY 330
           +  S    L   LTGIH   K   SR+  I  Y
Sbjct: 117 EQASGDNLLLNTLTGIHQRHKFKYSRLFAIGLY 149

>POLG_HCVH4 (Q01404) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70)] (Fragment)
          Length = 519

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 348 LLHGTKVLLDNTNPAIEHLDGTVYSCKMSSQLSCCRA 238
           L HG +VL D  N A  +L G  +S  +S+ +SC  A
Sbjct: 150 LAHGVRVLEDGVNYATGNLPGCSFSIFLSALMSCLTA 186

>POLG_HCVHK (Q01403) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70)] (Fragment)
          Length = 519

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 348 LLHGTKVLLDNTNPAIEHLDGTVYSCKMSSQLSC 247
           L HG +VL D  N A  +L G  +S  +S+ +SC
Sbjct: 150 LAHGVRVLEDGVNYATGNLPGCSFSIFLSALMSC 183

>VGLM_TSWVR (Q9IKB5) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = -2

Query: 566 LLAGDLSYVVLNFSTNS----FIVLEQFVNIAR*VMRRVSLYSVKKSSWNFSDSIAGSLL 399
           LL G  +  +LN  T+     F++  + V I   V  + +   ++ +  +F  +  G+  
Sbjct: 637 LLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGNC- 695

Query: 398 TRLETCLRSELSSGISPFCMAPRYCW 321
              +TC +++  +G   FC+ P   W
Sbjct: 696 ---DTCRKNQALTGFQDFCITPTSYW 718

>VGLM_TSWV1 (P36291) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = -2

Query: 566 LLAGDLSYVVLNFSTNS----FIVLEQFVNIAR*VMRRVSLYSVKKSSWNFSDSIAGSLL 399
           LL G  +  +LN  T+     F++  + V I   V  + +   ++ +  +F  +  G+  
Sbjct: 637 LLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGNC- 695

Query: 398 TRLETCLRSELSSGISPFCMAPRYCW 321
              +TC +++  +G   FC+ P   W
Sbjct: 696 ---DTCRKNQALTGFQDFCVTPTSYW 718

>VGLM_TSWV (O55647) Envelope polyprotein precursor (M polyprotein) [Contains:|
           Glycoprotein G1; Glycoprotein G2]
          Length = 1135

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = -2

Query: 566 LLAGDLSYVVLNFSTNS----FIVLEQFVNIAR*VMRRVSLYSVKKSSWNFSDSIAGSLL 399
           LL G  +  +LN  T+     F++  + V I   V  + +   ++ +  +F  +  G+  
Sbjct: 637 LLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGNC- 695

Query: 398 TRLETCLRSELSSGISPFCMAPRYCW 321
              +TC +++  +G   FC+ P   W
Sbjct: 696 ---DTCRKNQALTGFQDFCITPTSYW 718

>YD61_SCHPO (Q10313) Hypothetical protein C17G8.01c in chromosome I|
          Length = 787

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +1

Query: 175 ETVEAERISVDHVAHLKPSDGGSAAT-QLAAHLTGIHSAIKMLNSRVRVIQQYLGAM 342
           +TVE+  + V  +A+L+  +  S  T Q + H+T IH + K +NS  R+ +QYL  M
Sbjct: 631 KTVESSLVQVLTIANLQWQEAFSRYTLQDSFHITMIHESQKPVNS--RIWEQYLQHM 685


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,949,645
Number of Sequences: 219361
Number of extensions: 1743161
Number of successful extensions: 3908
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3903
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)