ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags13b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U36939.1|HVU36939 Hordeum vulgare vacuolar ATPase catalytic s... 90 5e-16
2dbj|AB032840.1| Hordeum vulgare HVA/68 mRNA for vacuolar proton-... 90 5e-16
3gb|DQ432014.1| Triticum aestivum vacuolar proton-ATPase subunit ... 82 1e-13
4dbj|AK061925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-07
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-07
6dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-07
7dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-07
8dbj|AK069821.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-07
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 1.6
10dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic D... 38 1.6
11dbj|AK067063.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 1.6
12gb|AC152944.2| Mus musculus 10 BAC RP23-427I4 (Roswell Park Canc... 36 6.4
13ref|XM_590269.2| PREDICTED: Bos taurus similar to tudor domain c... 36 6.4
14gb|AC154330.2| Mus musculus BAC clone RP23-286H23 from chromosom... 36 6.4
15gb|AC118020.11| Mus musculus, clone RP23-459B19, complete sequence 36 6.4
16emb|CT010235.1| Mus musculus full open reading frame cDNA clone ... 36 6.4
17ref|NM_011809.2| Mus musculus E26 avian leukemia oncogene 2, 3' ... 36 6.4
18emb|X06601.1|SPADE1 Fission yeast ade1 gene for GARSase and AIRS... 36 6.4
19emb|AL021730.2|SPBC4C3 S.pombe chromosome II cosmid c4C3 36 6.4
20gb|BC005486.1| Mus musculus E26 avian leukemia oncogene 2, 3' do... 36 6.4
21gb|BC005504.1| Mus musculus E26 avian leukemia oncogene 2, 3' do... 36 6.4
22emb|AL844139.4| Mouse DNA sequence from clone RP23-21G2 on chrom... 36 6.4
23dbj|AK128933.1| Mus musculus cDNA fis, clone TRACH3004303, highl... 36 6.4
24dbj|AP005827.1| Mus musculus genomic DNA, chromosome 16 clone:RP... 36 6.4
25dbj|AK144974.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD... 36 6.4
26dbj|AK143687.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 36 6.4
27dbj|AK145852.1| Mus musculus 15 days pregnant adult female place... 36 6.4
28dbj|AK152750.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 36 6.4
29dbj|AK151315.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 36 6.4
30dbj|AK153478.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 36 6.4
31dbj|AK150175.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 36 6.4
32emb|CR390524.1| Gallus gallus finished cDNA, clone ChEST12g14 36 6.4
33emb|CR385178.1| Gallus gallus finished cDNA, clone ChEST545n4 36 6.4
34ref|NM_001022225.1| Schizosaccharomyces pombe 972h- hypothetical... 36 6.4
35gb|AC006228.5|AC006228 Genomic sequence for Arabidopsis thaliana... 36 6.4
36dbj|AK038348.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 36 6.4
37gb|J04103.1|MUSETS2 Mouse erythroblastosis virus oncogene homolo... 36 6.4

>gb|U36939.1|HVU36939 Hordeum vulgare vacuolar ATPase catalytic subunit mRNA, partial cds
          Length = 2089

 Score = 89.7 bits (45), Expect = 5e-16
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                             
Query: 1    ggctgtggagcgagcagctaatgctgatggacacaagataacctacgcc 49
            |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1540 ggctgtggagcgagcagccaatgctgatggacacaagataacctacgcc 1588



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>dbj|AB032840.1| Hordeum vulgare HVA/68 mRNA for vacuolar proton-ATPase, complete cds
          Length = 2281

 Score = 89.7 bits (45), Expect = 5e-16
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                             
Query: 1    ggctgtggagcgagcagctaatgctgatggacacaagataacctacgcc 49
            |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1717 ggctgtggagcgagcagccaatgctgatggacacaagataacctacgcc 1765



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>gb|DQ432014.1| Triticum aestivum vacuolar proton-ATPase subunit A mRNA, complete cds
          Length = 2358

 Score = 81.8 bits (41), Expect = 1e-13
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                         
Query: 5    gtggagcgagcagctaatgctgatggacacaagataacctacgcc 49
            |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1776 gtggagcgagcagccaatgctgatggacacaagataacctacgcc 1820



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>dbj|AK061925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C02, full
           insert sequence
          Length = 1001

 Score = 60.0 bits (30), Expect = 4e-07
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 1   ggctgtggagcgagcagctaatgctgatggacacaagataac 42
           |||||||||||| |||||||||||||||||||| || |||||
Sbjct: 508 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 549



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 4e-07
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 1        ggctgtggagcgagcagctaatgctgatggacacaagataac 42
                |||||||||||| |||||||||||||||||||| || |||||
Sbjct: 26903271 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 26903230



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>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0065C04
          Length = 165270

 Score = 60.0 bits (30), Expect = 4e-07
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 1     ggctgtggagcgagcagctaatgctgatggacacaagataac 42
             |||||||||||| |||||||||||||||||||| || |||||
Sbjct: 27032 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 26991



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>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0051O02
          Length = 169532

 Score = 60.0 bits (30), Expect = 4e-07
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                        
Query: 1      ggctgtggagcgagcagctaatgctgatggacacaagataac 42
              |||||||||||| |||||||||||||||||||| || |||||
Sbjct: 157897 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 157856



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>dbj|AK069821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L13, full
            insert sequence
          Length = 2315

 Score = 60.0 bits (30), Expect = 4e-07
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 1    ggctgtggagcgagcagctaatgctgatggacacaagataac 42
            |||||||||||| |||||||||||||||||||| || |||||
Sbjct: 1807 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 1848



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                  
Query: 5       gtggagcgagcagctaatgctgatggacacaagat 39
               |||||||| ||||||  |||||||||||| |||||
Sbjct: 4126915 gtggagcgggcagctggtgctgatggacagaagat 4126949



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>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_E05
          Length = 116305

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                                
Query: 5     gtggagcgagcagctaatgctgatggacacaagat 39
             |||||||| ||||||  |||||||||||| |||||
Sbjct: 36929 gtggagcgggcagctggtgctgatggacagaagat 36963



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>dbj|AK067063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089J10, full
            insert sequence
          Length = 2295

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 31/35 (88%)
 Strand = Plus / Plus

                                               
Query: 5    gtggagcgagcagctaatgctgatggacacaagat 39
            |||||||| ||||||  |||||||||||| |||||
Sbjct: 1765 gtggagcgggcagctggtgctgatggacagaagat 1799



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>gb|AC152944.2| Mus musculus 10 BAC RP23-427I4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 179149

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     gctgatggacacaagata 40
              ||||||||||||||||||
Sbjct: 171032 gctgatggacacaagata 171015



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>ref|XM_590269.2| PREDICTED: Bos taurus similar to tudor domain containing 6
            (LOC512705), mRNA
          Length = 6802

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 24   ctgatggacacaagataa 41
            ||||||||||||||||||
Sbjct: 4790 ctgatggacacaagataa 4773



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>gb|AC154330.2| Mus musculus BAC clone RP23-286H23 from chromosome 16, complete
             sequence
          Length = 203553

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     ggctgtggagcgagcagc 18
             ||||||||||||||||||
Sbjct: 30246 ggctgtggagcgagcagc 30229



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>gb|AC118020.11| Mus musculus, clone RP23-459B19, complete sequence
          Length = 191669

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 23     gctgatggacacaagata 40
              ||||||||||||||||||
Sbjct: 133984 gctgatggacacaagata 134001



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>emb|CT010235.1| Mus musculus full open reading frame cDNA clone RZPDo836B1251D for
           gene Ets2, E26 avian leukemia oncogene 2, 3' domain;
           complete cds, incl. stopcodon
          Length = 1407

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 311 ggctgtggagcgagcagc 328



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>ref|NM_011809.2| Mus musculus E26 avian leukemia oncogene 2, 3' domain (Ets2), mRNA
          Length = 3496

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 470 ggctgtggagcgagcagc 487



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>emb|X06601.1|SPADE1 Fission yeast ade1 gene for GARSase and AIRSase GARSase = glycinamide
            ribotide synthetase; AIRSase = aminoimidazole ribotide
            synthetase
          Length = 3614

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 11   cgagcagctaatgctgatggac 32
            |||||||||||||| |||||||
Sbjct: 1201 cgagcagctaatgcagatggac 1180



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>emb|AL021730.2|SPBC4C3 S.pombe chromosome II cosmid c4C3
          Length = 29767

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 11    cgagcagctaatgctgatggac 32
             |||||||||||||| |||||||
Sbjct: 26185 cgagcagctaatgcagatggac 26164



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>gb|BC005486.1| Mus musculus E26 avian leukemia oncogene 2, 3' domain, mRNA (cDNA
           clone MGC:7318 IMAGE:3486021), complete cds
          Length = 3496

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 470 ggctgtggagcgagcagc 487



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>gb|BC005504.1| Mus musculus E26 avian leukemia oncogene 2, 3' domain, mRNA (cDNA
           clone MGC:7483 IMAGE:3490813), complete cds
          Length = 3434

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 410 ggctgtggagcgagcagc 427



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>emb|AL844139.4| Mouse DNA sequence from clone RP23-21G2 on chromosome 4, complete
            sequence
          Length = 14860

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 29   ggacacaagataacctac 46
            ||||||||||||||||||
Sbjct: 4103 ggacacaagataacctac 4086



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>dbj|AK128933.1| Mus musculus cDNA fis, clone TRACH3004303, highly similar to
           C-ETS-2 protein
          Length = 3432

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 501 ggctgtggagcgagcagc 518



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>dbj|AP005827.1| Mus musculus genomic DNA, chromosome 16 clone:RP21-668B6, complete
              sequence
          Length = 214865

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      ggctgtggagcgagcagc 18
              ||||||||||||||||||
Sbjct: 195624 ggctgtggagcgagcagc 195641



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>dbj|AK144974.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN
           full-length enriched library, clone:G830016K02
           product:E26 avian leukemia oncogene 2, 3' domain, full
           insert sequence
          Length = 3505

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 500 ggctgtggagcgagcagc 517



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>dbj|AK143687.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430010A06 product:E26 avian leukemia
           oncogene 2, 3' domain, full insert sequence
          Length = 3507

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 501 ggctgtggagcgagcagc 518



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>dbj|AK145852.1| Mus musculus 15 days pregnant adult female placenta cDNA, RIKEN
           full-length enriched library, clone:I530008F04
           product:E26 avian leukemia oncogene 2, 3' domain, full
           insert sequence
          Length = 3388

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 385 ggctgtggagcgagcagc 402



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>dbj|AK152750.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830083L19 product:E26 avian
           leukemia oncogene 2, 3' domain, full insert sequence
          Length = 3506

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 503 ggctgtggagcgagcagc 520



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>dbj|AK151315.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830027P13 product:E26 avian
           leukemia oncogene 2, 3' domain, full insert sequence
          Length = 3503

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 500 ggctgtggagcgagcagc 517



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>dbj|AK153478.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830165M05 product:E26 avian
           leukemia oncogene 2, 3' domain, full insert sequence
          Length = 3504

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 501 ggctgtggagcgagcagc 518



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>dbj|AK150175.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:G530141N11 product:E26 avian
           leukemia oncogene 2, 3' domain, full insert sequence
          Length = 1699

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 479 ggctgtggagcgagcagc 496



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>emb|CR390524.1| Gallus gallus finished cDNA, clone ChEST12g14
          Length = 842

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 425 ggctgtggagcgagcagc 408



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>emb|CR385178.1| Gallus gallus finished cDNA, clone ChEST545n4
          Length = 1392

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 976 ggctgtggagcgagcagc 959



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>ref|NM_001022225.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC405.01),
           partial mRNA
          Length = 2367

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 11  cgagcagctaatgctgatggac 32
           |||||||||||||| |||||||
Sbjct: 317 cgagcagctaatgcagatggac 296



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>gb|AC006228.5|AC006228 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence
          Length = 104806

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 2     gctgtggagcgagcagctaatg 23
             |||||||| |||||||||||||
Sbjct: 71931 gctgtggatcgagcagctaatg 71910



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>dbj|AK038348.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130096M19 product:E26 avian
           leukemia oncogene 2, 3' domain, full insert sequence
          Length = 3539

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 536 ggctgtggagcgagcagc 553



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>gb|J04103.1|MUSETS2 Mouse erythroblastosis virus oncogene homolog 2 (ets-2) mRNA,
           complete cds
          Length = 1552

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 1   ggctgtggagcgagcagc 18
           ||||||||||||||||||
Sbjct: 448 ggctgtggagcgagcagc 465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 252,339
Number of Sequences: 3902068
Number of extensions: 252339
Number of successful extensions: 63505
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63412
Number of HSP's gapped (non-prelim): 93
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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