| Clone Name | bags13b09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U36939.1|HVU36939 Hordeum vulgare vacuolar ATPase catalytic subunit mRNA, partial cds Length = 2089 Score = 89.7 bits (45), Expect = 5e-16 Identities = 48/49 (97%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagctaatgctgatggacacaagataacctacgcc 49 |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1540 ggctgtggagcgagcagccaatgctgatggacacaagataacctacgcc 1588
>dbj|AB032840.1| Hordeum vulgare HVA/68 mRNA for vacuolar proton-ATPase, complete cds Length = 2281 Score = 89.7 bits (45), Expect = 5e-16 Identities = 48/49 (97%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagctaatgctgatggacacaagataacctacgcc 49 |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1717 ggctgtggagcgagcagccaatgctgatggacacaagataacctacgcc 1765
>gb|DQ432014.1| Triticum aestivum vacuolar proton-ATPase subunit A mRNA, complete cds Length = 2358 Score = 81.8 bits (41), Expect = 1e-13 Identities = 44/45 (97%) Strand = Plus / Plus Query: 5 gtggagcgagcagctaatgctgatggacacaagataacctacgcc 49 |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1776 gtggagcgagcagccaatgctgatggacacaagataacctacgcc 1820
>dbj|AK061925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C02, full insert sequence Length = 1001 Score = 60.0 bits (30), Expect = 4e-07 Identities = 39/42 (92%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagctaatgctgatggacacaagataac 42 |||||||||||| |||||||||||||||||||| || ||||| Sbjct: 508 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 549
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 4e-07 Identities = 39/42 (92%) Strand = Plus / Minus Query: 1 ggctgtggagcgagcagctaatgctgatggacacaagataac 42 |||||||||||| |||||||||||||||||||| || ||||| Sbjct: 26903271 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 26903230
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 60.0 bits (30), Expect = 4e-07 Identities = 39/42 (92%) Strand = Plus / Minus Query: 1 ggctgtggagcgagcagctaatgctgatggacacaagataac 42 |||||||||||| |||||||||||||||||||| || ||||| Sbjct: 27032 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 26991
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 60.0 bits (30), Expect = 4e-07 Identities = 39/42 (92%) Strand = Plus / Minus Query: 1 ggctgtggagcgagcagctaatgctgatggacacaagataac 42 |||||||||||| |||||||||||||||||||| || ||||| Sbjct: 157897 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 157856
>dbj|AK069821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L13, full insert sequence Length = 2315 Score = 60.0 bits (30), Expect = 4e-07 Identities = 39/42 (92%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagctaatgctgatggacacaagataac 42 |||||||||||| |||||||||||||||||||| || ||||| Sbjct: 1807 ggctgtggagcgtgcagctaatgctgatggacaaaaaataac 1848
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 1.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 5 gtggagcgagcagctaatgctgatggacacaagat 39 |||||||| |||||| |||||||||||| ||||| Sbjct: 4126915 gtggagcgggcagctggtgctgatggacagaagat 4126949
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 38.2 bits (19), Expect = 1.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 5 gtggagcgagcagctaatgctgatggacacaagat 39 |||||||| |||||| |||||||||||| ||||| Sbjct: 36929 gtggagcgggcagctggtgctgatggacagaagat 36963
>dbj|AK067063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089J10, full insert sequence Length = 2295 Score = 38.2 bits (19), Expect = 1.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 5 gtggagcgagcagctaatgctgatggacacaagat 39 |||||||| |||||| |||||||||||| ||||| Sbjct: 1765 gtggagcgggcagctggtgctgatggacagaagat 1799
>gb|AC152944.2| Mus musculus 10 BAC RP23-427I4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 179149 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 gctgatggacacaagata 40 |||||||||||||||||| Sbjct: 171032 gctgatggacacaagata 171015
>ref|XM_590269.2| PREDICTED: Bos taurus similar to tudor domain containing 6 (LOC512705), mRNA Length = 6802 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 ctgatggacacaagataa 41 |||||||||||||||||| Sbjct: 4790 ctgatggacacaagataa 4773
>gb|AC154330.2| Mus musculus BAC clone RP23-286H23 from chromosome 16, complete sequence Length = 203553 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 30246 ggctgtggagcgagcagc 30229
>gb|AC118020.11| Mus musculus, clone RP23-459B19, complete sequence Length = 191669 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 gctgatggacacaagata 40 |||||||||||||||||| Sbjct: 133984 gctgatggacacaagata 134001
>emb|CT010235.1| Mus musculus full open reading frame cDNA clone RZPDo836B1251D for gene Ets2, E26 avian leukemia oncogene 2, 3' domain; complete cds, incl. stopcodon Length = 1407 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 311 ggctgtggagcgagcagc 328
>ref|NM_011809.2| Mus musculus E26 avian leukemia oncogene 2, 3' domain (Ets2), mRNA Length = 3496 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 470 ggctgtggagcgagcagc 487
>emb|X06601.1|SPADE1 Fission yeast ade1 gene for GARSase and AIRSase GARSase = glycinamide ribotide synthetase; AIRSase = aminoimidazole ribotide synthetase Length = 3614 Score = 36.2 bits (18), Expect = 6.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 11 cgagcagctaatgctgatggac 32 |||||||||||||| ||||||| Sbjct: 1201 cgagcagctaatgcagatggac 1180
>emb|AL021730.2|SPBC4C3 S.pombe chromosome II cosmid c4C3 Length = 29767 Score = 36.2 bits (18), Expect = 6.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 11 cgagcagctaatgctgatggac 32 |||||||||||||| ||||||| Sbjct: 26185 cgagcagctaatgcagatggac 26164
>gb|BC005486.1| Mus musculus E26 avian leukemia oncogene 2, 3' domain, mRNA (cDNA clone MGC:7318 IMAGE:3486021), complete cds Length = 3496 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 470 ggctgtggagcgagcagc 487
>gb|BC005504.1| Mus musculus E26 avian leukemia oncogene 2, 3' domain, mRNA (cDNA clone MGC:7483 IMAGE:3490813), complete cds Length = 3434 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 410 ggctgtggagcgagcagc 427
>emb|AL844139.4| Mouse DNA sequence from clone RP23-21G2 on chromosome 4, complete sequence Length = 14860 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 29 ggacacaagataacctac 46 |||||||||||||||||| Sbjct: 4103 ggacacaagataacctac 4086
>dbj|AK128933.1| Mus musculus cDNA fis, clone TRACH3004303, highly similar to C-ETS-2 protein Length = 3432 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 501 ggctgtggagcgagcagc 518
>dbj|AP005827.1| Mus musculus genomic DNA, chromosome 16 clone:RP21-668B6, complete sequence Length = 214865 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 195624 ggctgtggagcgagcagc 195641
>dbj|AK144974.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830016K02 product:E26 avian leukemia oncogene 2, 3' domain, full insert sequence Length = 3505 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 500 ggctgtggagcgagcagc 517
>dbj|AK143687.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430010A06 product:E26 avian leukemia oncogene 2, 3' domain, full insert sequence Length = 3507 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 501 ggctgtggagcgagcagc 518
>dbj|AK145852.1| Mus musculus 15 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530008F04 product:E26 avian leukemia oncogene 2, 3' domain, full insert sequence Length = 3388 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 385 ggctgtggagcgagcagc 402
>dbj|AK152750.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830083L19 product:E26 avian leukemia oncogene 2, 3' domain, full insert sequence Length = 3506 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 503 ggctgtggagcgagcagc 520
>dbj|AK151315.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830027P13 product:E26 avian leukemia oncogene 2, 3' domain, full insert sequence Length = 3503 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 500 ggctgtggagcgagcagc 517
>dbj|AK153478.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830165M05 product:E26 avian leukemia oncogene 2, 3' domain, full insert sequence Length = 3504 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 501 ggctgtggagcgagcagc 518
>dbj|AK150175.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530141N11 product:E26 avian leukemia oncogene 2, 3' domain, full insert sequence Length = 1699 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 479 ggctgtggagcgagcagc 496
>emb|CR390524.1| Gallus gallus finished cDNA, clone ChEST12g14 Length = 842 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 425 ggctgtggagcgagcagc 408
>emb|CR385178.1| Gallus gallus finished cDNA, clone ChEST545n4 Length = 1392 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 976 ggctgtggagcgagcagc 959
>ref|NM_001022225.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC405.01), partial mRNA Length = 2367 Score = 36.2 bits (18), Expect = 6.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 11 cgagcagctaatgctgatggac 32 |||||||||||||| ||||||| Sbjct: 317 cgagcagctaatgcagatggac 296
>gb|AC006228.5|AC006228 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence Length = 104806 Score = 36.2 bits (18), Expect = 6.4 Identities = 21/22 (95%) Strand = Plus / Minus Query: 2 gctgtggagcgagcagctaatg 23 |||||||| ||||||||||||| Sbjct: 71931 gctgtggatcgagcagctaatg 71910
>dbj|AK038348.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130096M19 product:E26 avian leukemia oncogene 2, 3' domain, full insert sequence Length = 3539 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 536 ggctgtggagcgagcagc 553
>gb|J04103.1|MUSETS2 Mouse erythroblastosis virus oncogene homolog 2 (ets-2) mRNA, complete cds Length = 1552 Score = 36.2 bits (18), Expect = 6.4 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ggctgtggagcgagcagc 18 |||||||||||||||||| Sbjct: 448 ggctgtggagcgagcagc 465 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 252,339 Number of Sequences: 3902068 Number of extensions: 252339 Number of successful extensions: 63505 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63412 Number of HSP's gapped (non-prelim): 93 length of query: 49 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 29 effective length of database: 17,155,003,908 effective search space: 497495113332 effective search space used: 497495113332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)