ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT1_TETPI (P80394) Metallothionein-1 precursor (MT-1) [Contains:... 34 0.29
2MT1_TETPY (O97388) Metallothionein-1 precursor (MT-1) [Contains:... 33 0.38
3MT1_TETTH (Q8T6B3) Metallothionein-1 (MT-1) 31 1.9
4ZBT38_RAT (Q5EXX3) Zinc finger and BTB domain-containing protein... 30 4.3
5MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (C... 30 5.6
6GRN3_CYPCA (P81015) Granulin-3 30 5.6
7STNB_CAEEL (P90761) Putative stoned B-like protein (Unc-41) 29 7.3
8Y044_UREPA (Q9PRA1) Hypothetical protein UU044 29 7.3
9KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-as... 29 9.5

>MT1_TETPI (P80394) Metallothionein-1 precursor (MT-1) [Contains:|
           Metallothionein-2 (MT-2)]
          Length = 107

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 74  CSGCPCCRPGKWYCCPCGD 130
           C+GC CC+P K  CC CGD
Sbjct: 52  CTGCKCCQPAKSGCC-CGD 69



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>MT1_TETPY (O97388) Metallothionein-1 precursor (MT-1) [Contains:|
           Metallothionein-2 (MT-2)]
          Length = 107

 Score = 33.5 bits (75), Expect = 0.38
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 74  CSGCPCCRPGKWYCCPCGD 130
           C+GC CC P K  CC CGD
Sbjct: 52  CTGCKCCEPAKSGCC-CGD 69



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>MT1_TETTH (Q8T6B3) Metallothionein-1 (MT-1)|
          Length = 107

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +2

Query: 71  GC--SGCPCCRPGKWYCCPCGD 130
           GC  +GC CC+P K  CC CGD
Sbjct: 49  GCKWTGCKCCQPAKSGCC-CGD 69



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>ZBT38_RAT (Q5EXX3) Zinc finger and BTB domain-containing protein 38 (Zinc|
           finger protein expressed in neurons) (Zenon)
          Length = 1203

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 144 QEASPQPEPILSESVPRPNEED 209
           QE SPQP PILS S P  +E D
Sbjct: 293 QERSPQPAPILSHSEPPSSEGD 314



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>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)|
          Length = 162

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 74  CSGCPCCRPGKWYCCPCGD 130
           C+ C CC+P +  CC CGD
Sbjct: 107 CTSCQCCKPVQQGCC-CGD 124



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>GRN3_CYPCA (P81015) Granulin-3|
          Length = 57

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
 Frame = +2

Query: 77  SGCPCCRP--GKWYCCP--CGDC 133
           SG  CCR   G WYCCP   G C
Sbjct: 12  SGTTCCRSPFGVWYCCPFLMGQC 34



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>STNB_CAEEL (P90761) Putative stoned B-like protein (Unc-41)|
          Length = 1657

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 4/102 (3%)
 Frame = +3

Query: 135 PREQEASPQP----EPILSESVPRPNEEDDPKXXXXXXXXXXXXXXXXXXXXXXXXXXXX 302
           P E  A P+P    EP+  ++ P+P    DP                             
Sbjct: 623 PAESAAPPRPVAPMEPLFKQAPPQP----DPFGWDSSGHTGDAPTASEPVQELSPTPEAS 678

Query: 303 NNVATSIPVSSPPVPHEEAPKKSYASIVKVMKAVLPPNSAVP 428
           ++  TS P   PP    EAPKK   ++        PP +  P
Sbjct: 679 SSTGTSAPARPPPA-RPEAPKKDETAVDAAAPPRPPPAARPP 719



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>Y044_UREPA (Q9PRA1) Hypothetical protein UU044|
          Length = 782

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 126 ETVPREQEASPQPEPILSESVPRPNEEDDPK 218
           ET P+E+   P P P   E  P PN +  P+
Sbjct: 135 ETKPKEELLPPNPPPPKEEPKPEPNPQPQPQ 165



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>KR510_HUMAN (Q6L8G5) Keratin-associated protein 5-10 (Keratin-associated|
           protein 5.10) (Ultrahigh sulfur keratin-associated
           protein 5.10)
          Length = 202

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +2

Query: 71  GCSGCPCCRPGKWYCCP--CGDC 133
           GCS C CC+P    CC   CG C
Sbjct: 138 GCSQCNCCKP---CCCSSGCGSC 157


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,330,938
Number of Sequences: 219361
Number of extensions: 723369
Number of successful extensions: 2645
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2637
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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