ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags13b05 |
|---|---|
| Clone Library Name | barley_pub |
>PFPB_RICCO (Q41141) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 379 bits (972), Expect = e-105 Identities = 182/218 (83%), Positives = 197/218 (90%) Frame = +2 Query: 5 LIAELNEILAHDVVDEAGAWKSKLEPASRQLFDFLPKTIQEQLLLERDPHGNVQVAKIET 184 LIAELNEILAHDVVDE G WK KL S QLF+FLP IQEQL+LERDPHGNVQVAKIET Sbjct: 332 LIAELNEILAHDVVDEGGLWKKKLTSQSLQLFEFLPVAIQEQLMLERDPHGNVQVAKIET 391 Query: 185 EKMLIAMVETELEKRRAAGKYSAHFRGQSHFFGYEGRCGLPTNFDSSYCYALGYGAGALL 364 EKMLI MVETELEKR+ G Y AHF+GQSHFFGYEGRCGLPTNFDS+YCYALGY AGALL Sbjct: 392 EKMLIQMVETELEKRKQQGTYKAHFKGQSHFFGYEGRCGLPTNFDSTYCYALGYAAGALL 451 Query: 365 QFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVERRHGKFKPVIKKAMVELDAAPFKKF 544 GKTGLISSVGNL APV +WTVGGTALT+LMDVERRHGKFKPVIKKAMVEL+ APFKKF Sbjct: 452 HSGKTGLISSVGNLGAPVAEWTVGGTALTSLMDVERRHGKFKPVIKKAMVELEGAPFKKF 511 Query: 545 ASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLELG 658 AS+R+EWA+KNRY+SPGPIQF GPGSDA++HTL+LELG Sbjct: 512 ASLREEWALKNRYVSPGPIQFMGPGSDAASHTLLLELG 549
>PFPB_SOLTU (P21343) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 361 bits (927), Expect = e-100 Identities = 176/219 (80%), Positives = 195/219 (89%) Frame = +2 Query: 2 KLIAELNEILAHDVVDEAGAWKSKLEPASRQLFDFLPKTIQEQLLLERDPHGNVQVAKIE 181 +LIAELNEILAHDVVDEAG WK KL P +LF+ LP IQEQLLLERDPHGNVQVAKIE Sbjct: 331 QLIAELNEILAHDVVDEAGVWKKKLTPQCLELFELLPLAIQEQLLLERDPHGNVQVAKIE 390 Query: 182 TEKMLIAMVETELEKRRAAGKYSAHFRGQSHFFGYEGRCGLPTNFDSSYCYALGYGAGAL 361 TEKMLI MVETEL++R+ G Y+A F+GQ HFFGYEGRCGLP+NFDS+YCYALGYGAG+L Sbjct: 391 TEKMLIQMVETELDQRKQKGAYNAQFKGQFHFFGYEGRCGLPSNFDSTYCYALGYGAGSL 450 Query: 362 LQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVERRHGKFKPVIKKAMVELDAAPFKK 541 LQ GKTGLISSVGNLAAPVE+ TVGGTALTALMDVERRHGKFKPVIKKAMVEL+ APFKK Sbjct: 451 LQSGKTGLISSVGNLAAPVEELTVGGTALTALMDVERRHGKFKPVIKKAMVELEGAPFKK 510 Query: 542 FASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLELG 658 FAS R+EWA+ NRYI+PGPIQF GP ++ NHTL+LELG Sbjct: 511 FASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLELG 549
>PFPA_SOLTU (P21342) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 616 Score = 135 bits (341), Expect = 8e-32 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 8/224 (3%) Frame = +2 Query: 5 LIAELNEILAHDVVDEAGAWKSKLEPASRQLFDFLPKTIQEQLLLERDPHGNVQVAKIET 184 L+ E++ +L V A S+L P + LF+FLP I++QLLL + + Q+++IET Sbjct: 338 LLQEIHGLLRQGV--SADKISSQLSPWASALFEFLPHFIRKQLLLHPESDDSAQLSQIET 395 Query: 185 EKMLIAMVETELEKRRAAGKYSAH-FRGQSHFFGYEGRCGLPTNFDSSYCYALGYGAGAL 361 EK++ +VETE+ KR G Y F HFFGY+ R LP+ FD Y Y LG+ + Sbjct: 396 EKLIAHLVETEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHI 455 Query: 362 LQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVERRHGKFK-------PVIKKAMVEL 520 L G G ++++ NL P +W G + ++A+M V +R+G+ P + A V+L Sbjct: 456 LAAGLNGYMATITNLKNPANKWHCGASPISAMMTV-KRYGRGPGKASIGVPALHPATVDL 514 Query: 521 DAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLE 652 ++ + ++ + + Y +PGP+QF GPG+DA +L++E Sbjct: 515 RGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGSLVVE 558
>PFPA_RICCO (Q41140) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 617 Score = 131 bits (329), Expect = 2e-30 Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 7/202 (3%) Frame = +2 Query: 68 SKLEPASRQLFDFLPKTIQEQLLLERDPHGNVQVAKIETEKMLIAMVETELEKRRAAGKY 247 S+L P + LF+FLP I++QLLL + + Q+++IETEK+L +VE E+ KR G Y Sbjct: 357 SQLSPWASALFEFLPPFIKKQLLLYPESDDSAQLSQIETEKLLAHLVEAEMNKRLKEGTY 416 Query: 248 SAH-FRGQSHFFGYEGRCGLPTNFDSSYCYALGYGAGALLQFGKTGLISSVGNLAAPVEQ 424 F HFFGY+ R LP+ FD Y Y LG+ +L G G +++ NL PV + Sbjct: 417 KGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHVLAAGLNGYMATATNLKNPVNK 476 Query: 425 WTVGGTALTALMDVER------RHGKFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRYI 586 W G + A+M V+R KP I A V+L ++ ++ + + Y Sbjct: 477 WRCGAAPIAAMMTVKRWAQNPGATSIGKPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYR 536 Query: 587 SPGPIQFSGPGSDASNHTLMLE 652 +PGP+QF GPG+DA TL +E Sbjct: 537 NPGPLQFEGPGADAKPITLCVE 558
>LASP1_DROME (Q8I7C3) LIM and SH3 domain protein Lasp| Length = 657 Score = 32.7 bits (73), Expect = 0.98 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = -3 Query: 473 SSQHPSTQSVQFLQQSIVPQEQPGYQPTR*VLSCQTGEEHQHHSLMHSNSWN 318 +S HPS SV Q Q QP Q T L ++ HHSL+++N+ N Sbjct: 332 NSHHPSGNSVDQYDQPQQQQHQPQQQSTNPTL-VAAQQQQSHHSLLNNNASN 382
>HYAL_STRPU (O76536) Hyalin (Fragment)| Length = 1200 Score = 32.3 bits (72), Expect = 1.3 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -2 Query: 573 LMAHSSRIEANFLNGAASSSTIAFLITGLNL-PCLLSTSINAVSAVPPTVHCSTGAAR 403 L+ +S +F G S + I +G N PC + INAV PPTV+C+ A+ Sbjct: 756 LVTRTSAPGDSFPVGTTSVTYIFTDASGNNAQPCTFNVVINAVDTTPPTVNCANNIAQ 813 Score = 30.0 bits (66), Expect = 6.3 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -2 Query: 480 PCLLSTSINAVSAVPPTVHCSTGAAR 403 PC + +I+AV PPTV+C A+ Sbjct: 704 PCTFTVTISAVDTTPPTVNCINNVAQ 729
>TFB3_YARLI (Q6C7D0) RNA polymerase II transcription factor B subunit 3 (RNA| polymerase II transcription factor B p38 subunit) (RNA polymerase II transcription factor B 38 kDa subunit) Length = 346 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = +2 Query: 23 EILAHDVVDEAGAWKSKLEPAS--RQLFDFLPKTIQEQLLLERDPHGNVQVAKIETEKML 196 E LAHD+ +AG + K A +Q F L +Q +LL E + + N ++TE+ Sbjct: 271 EPLAHDIQHQAGGFTLKAAYARILQQAFFGLGVDVQTELLAEENGNSNGTAVPVKTEEDP 330 Query: 197 IAMVETELE 223 + + E ++ Sbjct: 331 VKLEEPSIQ 339
>HYAL_LYTVA (O96530) Hyalin (Fragment)| Length = 530 Score = 30.8 bits (68), Expect = 3.7 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -2 Query: 480 PCLLSTSINAVSAVPPTVHCSTGAARL 400 PC+ + ++N V PPTV+C + R+ Sbjct: 477 PCVFTITVNTVDTTPPTVNCVSDVVRV 503
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.0 bits (66), Expect = 6.3 Identities = 22/72 (30%), Positives = 31/72 (43%) Frame = -1 Query: 619 SRAAELDGTGADVSVLDGPFIPHRGKLLKWRSIKLNHSLLDHWLELAMPPLNIHQRSQCS 440 SR + GTG ++ KL K S+ NH + PP NI+Q S + Sbjct: 142 SRGVTIGGTGGNIR-----------KLTKVSSLTSNHHFA-----VCYPPSNIYQNSNNA 185 Query: 439 SSNSPLFHRSSQ 404 SNS L +S+ Sbjct: 186 GSNSALQRTTSE 197
>YWCA_BACSU (P39599) Putative symporter ywcA| Length = 516 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +2 Query: 338 LGYGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALM 460 LG+GA A + F GN+AAP+ +GG L A + Sbjct: 288 LGFGAAAFVGFDAITAADQAGNMAAPLLAKALGGDFLFAFV 328
>UVRC_PELUB (Q4FPI1) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 611 Score = 29.6 bits (65), Expect = 8.3 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%) Frame = +2 Query: 113 KTIQEQLLLERDPHGNVQVAKIETEKMLIAMVETELEKRRAAGKYSAH-----FRGQSHF 277 K I+E L + + ++ VAK T+ +IAM E ++ Y + F G + Sbjct: 328 KLIEETLSKKENSAISINVAKKGTKAKVIAMAEKNAKESLNRKIYETNNNKNLFEGVAKK 387 Query: 278 FGYEGRCGLPTNFDSSYCYALGYGAGALLQFGKTGLI 388 F + L +D+S+ GA++ FG G + Sbjct: 388 FDLKNGLNLVEVYDNSHISGTN-SVGAMITFGNEGFV 423
>GYRA_BACSU (P05653) DNA gyrase subunit A (EC 5.99.1.3)| Length = 821 Score = 29.6 bits (65), Expect = 8.3 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 8/165 (4%) Frame = +2 Query: 2 KLIAELNEILAHD------VVDEAGAWKSKLEPASR-QLFDFLPKTIQEQLLLERDPHGN 160 KLIAEL +ILA++ + +E K + R ++ +TI+++ L+ER Sbjct: 449 KLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIER----- 503 Query: 161 VQVAKIETEKMLIAMVETELEKRRAAGKYSAHFRGQSHFFGYEGRCGLPTNFDSSYCYAL 340 E +++ + KR A Y + RG +G G+ TN D + + Sbjct: 504 --------ENIVVTLTHNGYVKRLPASTYRSQKRGG------KGVQGMGTNEDDFVEHLI 549 Query: 341 GYGA-GALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVER 472 +L F G + P T G + L++VE+ Sbjct: 550 STSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEK 594 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,212,404 Number of Sequences: 219361 Number of extensions: 1968822 Number of successful extensions: 7039 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7029 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
