ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12m03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CPNE4_MOUSE (Q8BLR2) Copine-4 (Copine IV) 28 9.6
2CPNE4_HUMAN (Q96A23) Copine-4 (Copine IV) (Copine-8) 28 9.6

>CPNE4_MOUSE (Q8BLR2) Copine-4 (Copine IV)|
          Length = 557

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 1   YSSNDGALEE-IGRTEVIVNSSSPSWNA 81
           +  ND A ++ + RTEV++N+ SP+W +
Sbjct: 182 FRMNDDATQQLVHRTEVVMNNLSPAWKS 209



to top

>CPNE4_HUMAN (Q96A23) Copine-4 (Copine IV) (Copine-8)|
          Length = 557

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 1   YSSNDGALEE-IGRTEVIVNSSSPSWNA 81
           +  ND A ++ + RTEV++N+ SP+W +
Sbjct: 182 FRMNDDATQQLVHRTEVVMNNLSPAWKS 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.304    0.123    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,189,649
Number of Sequences: 219361
Number of extensions: 77068
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 80,573,946
effective HSP length: 6
effective length of database: 79,257,780
effective search space used: 1902186720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
to top