ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags12m03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466003.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2626 Score = 40.1 bits (20), Expect = 1.0 Identities = 62/76 (81%) Strand = Plus / Plus Query: 7 agcaatgacggagcgcttgaagaaatcgggcgcactgaagtaattgtaaactcatcgagc 66 ||||| || ||||| ||||||||| | ||||| ||||||||||| | || || | || | Sbjct: 493 agcaaagaaggagcacttgaagaacttgggcgtactgaagtaatattgaattctttgaac 552 Query: 67 ccgtcttggaatgcaa 82 || ||||||||||||| Sbjct: 553 ccatcttggaatgcaa 568
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 cgcttgaagaaatcgggcgc 39 |||||||||||||||||||| Sbjct: 224374 cgcttgaagaaatcgggcgc 224355
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.0 Identities = 62/76 (81%) Strand = Plus / Minus Query: 7 agcaatgacggagcgcttgaagaaatcgggcgcactgaagtaattgtaaactcatcgagc 66 ||||| || ||||| ||||||||| | ||||| ||||||||||| | || || | || | Sbjct: 19018101 agcaaagaaggagcacttgaagaacttgggcgtactgaagtaatattgaattctttgaac 19018042 Query: 67 ccgtcttggaatgcaa 82 || ||||||||||||| Sbjct: 19018041 ccatcttggaatgcaa 19018026
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 40.1 bits (20), Expect = 1.0 Identities = 62/76 (81%) Strand = Plus / Minus Query: 7 agcaatgacggagcgcttgaagaaatcgggcgcactgaagtaattgtaaactcatcgagc 66 ||||| || ||||| ||||||||| | ||||| ||||||||||| | || || | || | Sbjct: 23622 agcaaagaaggagcacttgaagaacttgggcgtactgaagtaatattgaattctttgaac 23563 Query: 67 ccgtcttggaatgcaa 82 || ||||||||||||| Sbjct: 23562 ccatcttggaatgcaa 23547
>dbj|AK120851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023M23, full insert sequence Length = 2625 Score = 40.1 bits (20), Expect = 1.0 Identities = 62/76 (81%) Strand = Plus / Plus Query: 7 agcaatgacggagcgcttgaagaaatcgggcgcactgaagtaattgtaaactcatcgagc 66 ||||| || ||||| ||||||||| | ||||| ||||||||||| | || || | || | Sbjct: 493 agcaaagaaggagcacttgaagaacttgggcgtactgaagtaatattgaattctttgaac 552 Query: 67 ccgtcttggaatgcaa 82 || ||||||||||||| Sbjct: 553 ccatcttggaatgcaa 568
>emb|BX897725.7| Zebrafish DNA sequence from clone CH211-244P18 in linkage group 20 Contains the gene for a novel protein similar to vertebrate delta-like 4 (Drosophila) (DLL4), the vps18 gene for vacuolar protein sorting protein 18, the gene for a novel protein containing an SNF2 family N-terminal domain and a Helicase conserved C-terminal domain, the gene for a novel protein similar to vertebrate ras homolog gene family, member V (RHOV), the gene for a novel protein containing a ChaC-like protein domain and three CpG islands, complete sequence Length = 170125 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 actgaagtaattgtaaact 58 ||||||||||||||||||| Sbjct: 17288 actgaagtaattgtaaact 17270
>emb|CR759734.3| Zebrafish DNA sequence from clone CH211-140L7 in linkage group 20, complete sequence Length = 185855 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 actgaagtaattgtaaact 58 ||||||||||||||||||| Sbjct: 122791 actgaagtaattgtaaact 122809
>emb|AL929049.4| Zebrafish DNA sequence from clone DKEY-14A13 in linkage group 20, complete sequence Length = 223182 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 actgaagtaattgtaaact 58 ||||||||||||||||||| Sbjct: 24577 actgaagtaattgtaaact 24559
>dbj|AP001023.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-817I5, complete sequence Length = 199197 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 gaagtaattgtaaactcat 61 ||||||||||||||||||| Sbjct: 26761 gaagtaattgtaaactcat 26743
>dbj|AP000673.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-88B16, complete sequence Length = 143353 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 gaagtaattgtaaactcat 61 ||||||||||||||||||| Sbjct: 59190 gaagtaattgtaaactcat 59172 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 498,402 Number of Sequences: 3902068 Number of extensions: 498402 Number of successful extensions: 28927 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28897 Number of HSP's gapped (non-prelim): 30 length of query: 92 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 71 effective length of database: 17,151,101,840 effective search space: 1217728230640 effective search space used: 1217728230640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
