ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags12m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PML_HUMAN (P29590) Probable transcription factor PML (Tripartite... 31 2.3
26PGD_BUCAI (P57208) 6-phosphogluconate dehydrogenase, decarboxyl... 30 5.1

>PML_HUMAN (P29590) Probable transcription factor PML (Tripartite motif|
           protein 19) (RING finger protein 71)
          Length = 882

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
 Frame = +2

Query: 35  CSLVPCRR------XQXGRRVKLARSSPI*PLPRXAAVEAKPRDSGAESSHGEVLCVELE 196
           CS   C R       + G+  +LARSSP  P P  +   + P   G  S    V+  E+ 
Sbjct: 479 CSQTQCPRKVIKMESEEGKEARLARSSPEQPRPSTSKAVSPPHLDGPPSPRSPVIGSEVF 538

Query: 197 EETSHQHDLGAEVAPSEVPV 256
              S+    GA  A   V V
Sbjct: 539 LPNSNHVASGAGEAEERVVV 558



to top

>6PGD_BUCAI (P57208) 6-phosphogluconate dehydrogenase, decarboxylating (EC|
           1.1.1.44)
          Length = 468

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +3

Query: 105 DRCHGRRLSKRSRGIRAP-NLLTARFFA--WSWRKRQAISMIWVLKLPRVKSLLRDCRSR 275
           D+  G+ +SK +  +R P +L+T   FA   S  KRQ I    +L+ P++K+ ++D  S 
Sbjct: 258 DKGTGKWISKSALDLREPLSLITESVFARYLSSLKRQRIIASKILQGPKIKTFIKDKNSF 317

Query: 276 KFRLRKLL 299
              +R+ L
Sbjct: 318 IEEVRRAL 325


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,494,222
Number of Sequences: 219361
Number of extensions: 936902
Number of successful extensions: 2965
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2965
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top